BLASTX nr result
ID: Coptis25_contig00014843
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00014843
(1234 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003635142.1| PREDICTED: uncharacterized protein LOC100244... 289 9e-76
emb|CBI18563.3| unnamed protein product [Vitis vinifera] 289 1e-75
ref|XP_002310753.1| f-box family protein [Populus trichocarpa] g... 274 4e-71
emb|CAN72540.1| hypothetical protein VITISV_028751 [Vitis vinifera] 256 6e-66
ref|XP_002522340.1| zinc finger protein, putative [Ricinus commu... 256 8e-66
>ref|XP_003635142.1| PREDICTED: uncharacterized protein LOC100244391 [Vitis vinifera]
Length = 332
Score = 289 bits (740), Expect = 9e-76
Identities = 163/340 (47%), Positives = 199/340 (58%), Gaps = 12/340 (3%)
Frame = +2
Query: 35 MIQELFGGGASLVGGERKFSFNGAVLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQ-- 208
MIQEL GGGA L+GGERK + NG +LE
Sbjct: 1 MIQELLGGGAGLIGGERKITINGGILEASPSPSPSPSPSSSSSGNTTTVTTAAAATTSSA 60
Query: 209 -QNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNXXXX 385
+NLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKN
Sbjct: 61 SENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKN-KNT 119
Query: 386 XXXXXXXXXXXGKIKT--PEFGKSNF--GFELEPPTNQVLWASPQNSQLMALLRAA--XX 547
GK K+ E GKS GF+ E P+N +LWASPQNS L+ALLRA
Sbjct: 120 SVSTAVGKSSAGKAKSAVSEIGKSGLGGGFDHEIPSNPILWASPQNSHLLALLRATQNPN 179
Query: 548 XXXXXXXSSVAIKEEGAMVGSYM-SDSALGTSALN-ARPTGVDHVSQVP-VGLYNSFWRX 718
+SV +K++G M+GS+M S+S +GT A+N AR G+DH++Q+P +GL +S+WR
Sbjct: 180 PNPSPISNSVTVKDDGVMIGSHMTSESGVGTGAVNIARNMGLDHLNQLPSIGLCSSYWR- 238
Query: 719 XXXXXXXXXXXXXXXXXXXXXSLLMGDVQNSGIQELFNRLRSSGNYYSNHSHPQFXXXXX 898
++G+VQN+GIQEL+ RLRSS NYY++HS
Sbjct: 239 --NNQHQTQQHQQNSHHQQQNGFILGEVQNTGIQELYQRLRSSTNYYTDHS----PVVLS 292
Query: 899 XXXXXXXXXXXXXXITGGEVGYWNPTLSWANLPTANGAFP 1018
I GGE+GYWNPT SW++LPT NGA+P
Sbjct: 293 NAVSSSSSILESAPIAGGELGYWNPTFSWSDLPTTNGAYP 332
>emb|CBI18563.3| unnamed protein product [Vitis vinifera]
Length = 425
Score = 289 bits (739), Expect = 1e-75
Identities = 167/365 (45%), Positives = 203/365 (55%), Gaps = 28/365 (7%)
Frame = +2
Query: 8 FVDLKRKVEMIQELFGGGASLVGGERKFSFNGAVLEGXXXXXXXXXXXXXXXXXXXXXXX 187
F KRK MIQEL GGGA L+GGERK + NG +LE
Sbjct: 65 FKGSKRKKRMIQELLGGGAGLIGGERKITINGGILEASPSPSPSPSPSSSSSGNTTTVTT 124
Query: 188 XXXXXDQ---QNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGG 358
+NLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGG
Sbjct: 125 AAAATTSSASENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGG 184
Query: 359 GCRKNXXXXXXXXXXXXXXXGKIKT--PEFGKSNF--GFELEPPTNQVLWASPQNSQLMA 526
GCRKN GK K+ E GKS GF+ E P+N +LWASPQNS L+A
Sbjct: 185 GCRKN-KNTSVSTAVGKSSAGKAKSAVSEIGKSGLGGGFDHEIPSNPILWASPQNSHLLA 243
Query: 527 LLRAA--XXXXXXXXXSSVAIKEEGAMVGSYM-SDSALGTSALN-ARPTGVDHVSQVP-V 691
LLRA +SV +K++G M+GS+M S+S +GT A+N AR G+DH++Q+P +
Sbjct: 244 LLRATQNPNPNPSPISNSVTVKDDGVMIGSHMTSESGVGTGAVNIARNMGLDHLNQLPSI 303
Query: 692 GLYNSFWRXXXXXXXXXXXXXXXXXXXXXXSLLMGDVQNSGIQELFNRLRSSGNYYSNHS 871
GL +S+WR ++G+VQN+GIQEL+ RLRSS NYY++HS
Sbjct: 304 GLCSSYWR---NNQHQTQQHQQNSHHQQQNGFILGEVQNTGIQELYQRLRSSTNYYTDHS 360
Query: 872 ----------------HPQFXXXXXXXXXXXXXXXXXXXITGGEVGYWNPTLSWANLPTA 1003
I GGE+GYWNPT SW++LPT
Sbjct: 361 PVVLSNAVSSSSSILESAPIAGVLSNAVSSSSSILESAPIAGGELGYWNPTFSWSDLPTT 420
Query: 1004 NGAFP 1018
NGA+P
Sbjct: 421 NGAYP 425
>ref|XP_002310753.1| f-box family protein [Populus trichocarpa]
gi|118482074|gb|ABK92968.1| unknown [Populus trichocarpa]
gi|222853656|gb|EEE91203.1| f-box family protein [Populus
trichocarpa]
Length = 323
Score = 274 bits (700), Expect = 4e-71
Identities = 155/340 (45%), Positives = 192/340 (56%), Gaps = 12/340 (3%)
Frame = +2
Query: 35 MIQELFGGGASLVGGERKFSFNGAVLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXD--- 205
MIQEL GG A L+GGERK N +LEG
Sbjct: 1 MIQELLGG-AGLIGGERKIPINATILEGTPSPSPSLSPSPSPSSSTTSAATTSATNSTPS 59
Query: 206 --QQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNXX 379
Q+NLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKN
Sbjct: 60 SAQENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKN-K 118
Query: 380 XXXXXXXXXXXXXGKIKT--PEFGKSNF--GFELEPPTNQVLWASPQNSQLMALLRAAXX 547
K+KT + G+S F GFE E ++ ++WASPQNS ++ALLRA
Sbjct: 119 NTSVSASVGKSGTNKMKTMASDIGRSGFGNGFEHELSSSPIMWASPQNSHILALLRATQN 178
Query: 548 XXXXXXXSSVAIKEEGAMVGS-YMSDSALGTSALNARPTGVDHVSQVP-VGLYNSFWRXX 721
+S+ +KEEG ++G+ ++S+ +GT+ALNAR G+D +SQVP +GL + FW+
Sbjct: 179 PNPSTLSNSIFVKEEGGLIGNQFISEPGVGTAALNARTLGLDPISQVPSLGLCSPFWK-- 236
Query: 722 XXXXXXXXXXXXXXXXXXXXSLLMGDVQNSGIQELFNRLRSSGNYYS-NHSHPQFXXXXX 898
+G+ QNSGIQEL+ RLRSS NYY+ N S
Sbjct: 237 -------------SNQHQQNGFTVGEAQNSGIQELYQRLRSSTNYYTDNPSAIVLSNVAT 283
Query: 899 XXXXXXXXXXXXXXITGGEVGYWNPTLSWANLPTANGAFP 1018
+ GGE+GYWNP SW++LPT NGA+P
Sbjct: 284 SSSTSTSTILESAPVAGGELGYWNPAFSWSDLPTTNGAYP 323
>emb|CAN72540.1| hypothetical protein VITISV_028751 [Vitis vinifera]
Length = 309
Score = 256 bits (655), Expect = 6e-66
Identities = 153/338 (45%), Positives = 181/338 (53%), Gaps = 10/338 (2%)
Frame = +2
Query: 35 MIQELFGGGASLVGGERKFSFNGAVLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQ-- 208
MIQEL GGGA L+GGERK + NG +LE
Sbjct: 1 MIQELLGGGAGLIGGERKITINGGILEASPSPSPSPSPSSSSSGNTTTVTTAAAATTSSA 60
Query: 209 -QNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNXXXX 385
+NLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKN
Sbjct: 61 SENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNTS 120
Query: 386 XXXXXXXXXXXGKIKTP--EFGKSNFG--FELEPPTNQVLWASPQNSQLMALLRAAXXXX 553
GK K+ E GKS G F+ E P+N +LWASPQNS L+ALLRA
Sbjct: 121 VSTAVGKSSA-GKAKSAVSEIGKSGLGGGFDHEIPSNPILWASPQNSHLLALLRATQNPN 179
Query: 554 XXXXX--SSVAIKEEGAMVGSYM-SDSALGTSALNARPTGVDHVSQVPVGLYNSFWRXXX 724
+SV +K++G M+GS+M S+S +GT AL + S NS
Sbjct: 180 PNPSPISNSVTVKDDGVMIGSHMTSESGVGT-ALTGETINIKLNSTNKTATINS------ 232
Query: 725 XXXXXXXXXXXXXXXXXXXSLLMGDVQNSGIQELFNRLRSSGNYYSNHSHPQFXXXXXXX 904
+L + QN+GIQEL+ RLRSS NYY++HS
Sbjct: 233 -----------------KMALYLVKFQNTGIQELYQRLRSSTNYYTDHS----PVVLSNA 271
Query: 905 XXXXXXXXXXXXITGGEVGYWNPTLSWANLPTANGAFP 1018
I GGE+GYWNPT SW++LPT NGA+P
Sbjct: 272 VSSSSSILESAPIAGGELGYWNPTFSWSDLPTTNGAYP 309
>ref|XP_002522340.1| zinc finger protein, putative [Ricinus communis]
gi|223538418|gb|EEF40024.1| zinc finger protein, putative
[Ricinus communis]
Length = 335
Score = 256 bits (654), Expect = 8e-66
Identities = 154/347 (44%), Positives = 186/347 (53%), Gaps = 19/347 (5%)
Frame = +2
Query: 35 MIQELFGGGASLVGGERKFSFNGAVLEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXD--- 205
MIQEL GG A L+GGE K S G +LEG
Sbjct: 1 MIQELLGG-AGLIGGETKISIAGTILEGTPSHSPSLSPSSSTTTTSATAATATATTTTAN 59
Query: 206 ------QQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCR 367
+NLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCR
Sbjct: 60 STTSSTSENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCR 119
Query: 368 KNXXXXXXXXXXXXXXXGKIKT--PEFGKSNFG--FELE-PPTNQVLWASPQNSQLMALL 532
KN K+KT E G+S+FG F+ E P ++ ++WASP NS L+ LL
Sbjct: 120 KN-KNTVVSASVAKSSNNKMKTMVSEIGRSSFGNVFDHELPSSSPIMWASPHNSHLLTLL 178
Query: 533 RA--AXXXXXXXXXSSVAIKEE-GAMVGSYMSDSALG-TSALNARPTGVDHVSQVP-VGL 697
RA +S+ +KEE G M+G+ M G T ALNAR G+DH+SQVP +GL
Sbjct: 179 RANHNPNPNSTTLSNSLGVKEETGCMIGTQMMAETTGATGALNARTLGMDHLSQVPSLGL 238
Query: 698 YNSFWRXXXXXXXXXXXXXXXXXXXXXXSLLMGDVQNSGIQELFNRLRSSGNYYSNHSHP 877
+ FW+ ++G+ QNSGIQEL+ RLRSS N Y +
Sbjct: 239 CSPFWK----------NSQNQAQHHQQNGFIVGEAQNSGIQELYQRLRSSTNTYYTDNSS 288
Query: 878 QFXXXXXXXXXXXXXXXXXXXITGGEVGYWNPTLSWANLPTANGAFP 1018
+ GGE+GYWNPT SW++LPT NGA+P
Sbjct: 289 VVLSNVGSSSTSSSNILESSPVAGGELGYWNPTFSWSDLPTTNGAYP 335