BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010494
         (512 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI25589.3| unnamed protein product [Vitis vinifera]              139   2e-31
ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucl...   139   2e-31
ref|XP_003609507.1| 116 kDa U5 small nuclear ribonucleoprotein c...   136   2e-30
ref|XP_002532501.1| 116 kD U5 small nuclear ribonucleoprotein co...   135   3e-30
ref|XP_003542669.1| PREDICTED: 116 kDa U5 small nuclear ribonucl...   135   3e-30

>emb|CBI25589.3| unnamed protein product [Vitis vinifera]
          Length = 931

 Score =  139 bits (350), Expect = 2e-31
 Identities = 69/79 (87%), Positives = 73/79 (92%)
 Frame = -2

Query: 256 QGVDASIMKTATLCNVNYGEDIYILMPLLFNTLPVVKMATEPLNPSELPKMVEGLRKISK 77
           +GVDASIMKTATLCN++Y ED+YI  PLLFNTLPVVK ATEPLNPSELPKMVEGLRKISK
Sbjct: 511 EGVDASIMKTATLCNLDYDEDVYIFRPLLFNTLPVVKTATEPLNPSELPKMVEGLRKISK 570

Query: 76  S*PLATTKVEESGEHTILG 20
           S PLA TKVEESGEHTILG
Sbjct: 571 SYPLAITKVEESGEHTILG 589



 Score =  111 bits (278), Expect = 5e-23
 Identities = 52/71 (73%), Positives = 59/71 (83%)
 Frame = -3

Query: 465 DHISAASATVGGIEAIHPVAGNVNFASANVGWSFTLHSFSKLYVKLHGFPFDAAKFASRL 286
           +HISAAS+T G ++ I P AGNV FASA+ GWSFTL SF+KLYVKLHG PFDA KFASRL
Sbjct: 242 NHISAASSTAGNVQIIDPAAGNVCFASASAGWSFTLQSFAKLYVKLHGVPFDANKFASRL 301

Query: 285 *GDIYYHPDTR 253
            GD+YYHPD R
Sbjct: 302 WGDMYYHPDAR 312


>ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component
           [Vitis vinifera] gi|147858113|emb|CAN81413.1|
           hypothetical protein VITISV_031170 [Vitis vinifera]
          Length = 988

 Score =  139 bits (350), Expect = 2e-31
 Identities = 69/79 (87%), Positives = 73/79 (92%)
 Frame = -2

Query: 256 QGVDASIMKTATLCNVNYGEDIYILMPLLFNTLPVVKMATEPLNPSELPKMVEGLRKISK 77
           +GVDASIMKTATLCN++Y ED+YI  PLLFNTLPVVK ATEPLNPSELPKMVEGLRKISK
Sbjct: 568 EGVDASIMKTATLCNLDYDEDVYIFRPLLFNTLPVVKTATEPLNPSELPKMVEGLRKISK 627

Query: 76  S*PLATTKVEESGEHTILG 20
           S PLA TKVEESGEHTILG
Sbjct: 628 SYPLAITKVEESGEHTILG 646



 Score =  111 bits (278), Expect = 5e-23
 Identities = 52/71 (73%), Positives = 59/71 (83%)
 Frame = -3

Query: 465 DHISAASATVGGIEAIHPVAGNVNFASANVGWSFTLHSFSKLYVKLHGFPFDAAKFASRL 286
           +HISAAS+T G ++ I P AGNV FASA+ GWSFTL SF+KLYVKLHG PFDA KFASRL
Sbjct: 299 NHISAASSTAGNVQIIDPAAGNVCFASASAGWSFTLQSFAKLYVKLHGVPFDANKFASRL 358

Query: 285 *GDIYYHPDTR 253
            GD+YYHPD R
Sbjct: 359 WGDMYYHPDAR 369


>ref|XP_003609507.1| 116 kDa U5 small nuclear ribonucleoprotein component [Medicago
           truncatula] gi|355510562|gb|AES91704.1| 116 kDa U5 small
           nuclear ribonucleoprotein component [Medicago
           truncatula]
          Length = 983

 Score =  136 bits (342), Expect = 2e-30
 Identities = 68/79 (86%), Positives = 72/79 (91%)
 Frame = -2

Query: 256 QGVDASIMKTATLCNVNYGEDIYILMPLLFNTLPVVKMATEPLNPSELPKMVEGLRKISK 77
           +GVDASIMKTATLCNV++ ED+YI  PLLFNTL VVK ATEPLNPSELPKMVEGLRKISK
Sbjct: 568 EGVDASIMKTATLCNVDFDEDVYIFRPLLFNTLSVVKTATEPLNPSELPKMVEGLRKISK 627

Query: 76  S*PLATTKVEESGEHTILG 20
           S PLA TKVEESGEHTILG
Sbjct: 628 SYPLAVTKVEESGEHTILG 646



 Score =  100 bits (250), Expect = 9e-20
 Identities = 46/71 (64%), Positives = 55/71 (77%)
 Frame = -3

Query: 465 DHISAASATVGGIEAIHPVAGNVNFASANVGWSFTLHSFSKLYVKLHGFPFDAAKFASRL 286
           +HI+AAS+  G ++ I PVAGNV FAS   GWSFTL SF+K+Y KLHG P +A KFASRL
Sbjct: 299 NHIAAASSVAGDVQVIDPVAGNVCFASGTAGWSFTLQSFAKMYGKLHGVPLEANKFASRL 358

Query: 285 *GDIYYHPDTR 253
            GD YYHPD+R
Sbjct: 359 WGDFYYHPDSR 369


>ref|XP_002532501.1| 116 kD U5 small nuclear ribonucleoprotein component, putative
           [Ricinus communis] gi|223527776|gb|EEF29877.1| 116 kD U5
           small nuclear ribonucleoprotein component, putative
           [Ricinus communis]
          Length = 992

 Score =  135 bits (341), Expect = 3e-30
 Identities = 70/80 (87%), Positives = 72/80 (90%), Gaps = 1/80 (1%)
 Frame = -2

Query: 256 QGVDASIMKTATLCNVNYG-EDIYILMPLLFNTLPVVKMATEPLNPSELPKMVEGLRKIS 80
           +GVDASIMKTATLCNVNY  ED+YI  PL FNTLPVVK ATEPLNPSELPKMVEGLRKIS
Sbjct: 571 EGVDASIMKTATLCNVNYSYEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKIS 630

Query: 79  KS*PLATTKVEESGEHTILG 20
           KS PLA TKVEESGEHTILG
Sbjct: 631 KSYPLAITKVEESGEHTILG 650



 Score =  110 bits (276), Expect = 9e-23
 Identities = 51/71 (71%), Positives = 58/71 (81%)
 Frame = -3

Query: 465 DHISAASATVGGIEAIHPVAGNVNFASANVGWSFTLHSFSKLYVKLHGFPFDAAKFASRL 286
           +HI+A S+T G ++ I P AGNV FASAN GWSFTL SF+KLY+KLHG PFDA KFASRL
Sbjct: 302 NHITAGSSTAGSVQVIDPAAGNVCFASANAGWSFTLQSFAKLYLKLHGIPFDADKFASRL 361

Query: 285 *GDIYYHPDTR 253
            GD YYHPDTR
Sbjct: 362 WGDWYYHPDTR 372


>ref|XP_003542669.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein
           component-like [Glycine max]
          Length = 986

 Score =  135 bits (340), Expect = 3e-30
 Identities = 68/79 (86%), Positives = 71/79 (89%)
 Frame = -2

Query: 256 QGVDASIMKTATLCNVNYGEDIYILMPLLFNTLPVVKMATEPLNPSELPKMVEGLRKISK 77
           +GVDASIMKTATLCNV+Y ED+YI  PL FNTL VVK ATEPLNPSELPKMVEGLRKISK
Sbjct: 566 EGVDASIMKTATLCNVDYDEDVYIFRPLQFNTLSVVKTATEPLNPSELPKMVEGLRKISK 625

Query: 76  S*PLATTKVEESGEHTILG 20
           S PLA TKVEESGEHTILG
Sbjct: 626 SYPLAVTKVEESGEHTILG 644



 Score =  108 bits (271), Expect = 3e-22
 Identities = 50/70 (71%), Positives = 57/70 (81%)
 Frame = -3

Query: 462 HISAASATVGGIEAIHPVAGNVNFASANVGWSFTLHSFSKLYVKLHGFPFDAAKFASRL* 283
           HISAAS+  GG++ + PVAGNV FASA  GWSFTLHSF+KLY KLHG P +A KFASRL 
Sbjct: 298 HISAASSIAGGVQVVDPVAGNVCFASATAGWSFTLHSFAKLYGKLHGIPLEANKFASRLW 357

Query: 282 GDIYYHPDTR 253
           GD Y+HPDTR
Sbjct: 358 GDYYFHPDTR 367