BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010493
         (592 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI25589.3| unnamed protein product [Vitis vinifera]              133   2e-29
ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucl...   133   2e-29
ref|NP_172112.1| U5 small nuclear ribonucleoprotein component [A...   125   5e-27
ref|NP_197905.1| elongation factor EF-2 [Arabidopsis thaliana] g...   125   5e-27
ref|XP_002889592.1| hypothetical protein ARALYDRAFT_470642 [Arab...   125   5e-27

>emb|CBI25589.3| unnamed protein product [Vitis vinifera]
          Length = 931

 Score =  133 bits (335), Expect = 2e-29
 Identities = 61/74 (82%), Positives = 69/74 (93%)
 Frame = -2

Query: 222 MTVNKVTKQWVYQARYRVPVAKAPAGSWVLTEGVDASIMKTATLCNVNYDEDVYLFKPLL 43
           MTV +VTK WVYQARYR+P++KAP GSWVL EGVDASIMKTATLCN++YDEDVY+F+PLL
Sbjct: 480 MTVKEVTKLWVYQARYRIPISKAPPGSWVLIEGVDASIMKTATLCNLDYDEDVYIFRPLL 539

Query: 42  FNILPVVKTATEPL 1
           FN LPVVKTATEPL
Sbjct: 540 FNTLPVVKTATEPL 553


>ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component
           [Vitis vinifera] gi|147858113|emb|CAN81413.1|
           hypothetical protein VITISV_031170 [Vitis vinifera]
          Length = 988

 Score =  133 bits (335), Expect = 2e-29
 Identities = 61/74 (82%), Positives = 69/74 (93%)
 Frame = -2

Query: 222 MTVNKVTKQWVYQARYRVPVAKAPAGSWVLTEGVDASIMKTATLCNVNYDEDVYLFKPLL 43
           MTV +VTK WVYQARYR+P++KAP GSWVL EGVDASIMKTATLCN++YDEDVY+F+PLL
Sbjct: 537 MTVKEVTKLWVYQARYRIPISKAPPGSWVLIEGVDASIMKTATLCNLDYDEDVYIFRPLL 596

Query: 42  FNILPVVKTATEPL 1
           FN LPVVKTATEPL
Sbjct: 597 FNTLPVVKTATEPL 610


>ref|NP_172112.1| U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana]
           gi|30679607|ref|NP_849600.1| U5 small nuclear
           ribonucleoprotein component [Arabidopsis thaliana]
           gi|8844127|gb|AAF80219.1|AC025290_8 Contains similarity
           to an U5 snRNP-specific protein 116 kD from Homo sapiens
           gi|4759280 and contains elongation factor G C-terminus
           PF|00679 and is a member of the elongation factor Tu
           family PF|00009 [Arabidopsis thaliana]
           gi|110741512|dbj|BAE98706.1| elongation factor like
           protein [Arabidopsis thaliana]
           gi|332189840|gb|AEE27961.1| U5 small nuclear
           ribonucleoprotein component [Arabidopsis thaliana]
           gi|332189841|gb|AEE27962.1| U5 small nuclear
           ribonucleoprotein component [Arabidopsis thaliana]
          Length = 987

 Score =  125 bits (314), Expect = 5e-27
 Identities = 57/74 (77%), Positives = 65/74 (87%)
 Frame = -2

Query: 222 MTVNKVTKQWVYQARYRVPVAKAPAGSWVLTEGVDASIMKTATLCNVNYDEDVYLFKPLL 43
           MT+ +VTK W+YQARYR+PV+ AP GSWVL EGVDASIMKTATLCN +YDEDVY+F+ L 
Sbjct: 536 MTIKEVTKLWIYQARYRIPVSSAPPGSWVLIEGVDASIMKTATLCNASYDEDVYIFRALQ 595

Query: 42  FNILPVVKTATEPL 1
           FN LPVVKTATEPL
Sbjct: 596 FNTLPVVKTATEPL 609


>ref|NP_197905.1| elongation factor EF-2 [Arabidopsis thaliana]
           gi|332006032|gb|AED93415.1| elongation factor EF-2
           [Arabidopsis thaliana]
          Length = 973

 Score =  125 bits (314), Expect = 5e-27
 Identities = 57/74 (77%), Positives = 65/74 (87%)
 Frame = -2

Query: 222 MTVNKVTKQWVYQARYRVPVAKAPAGSWVLTEGVDASIMKTATLCNVNYDEDVYLFKPLL 43
           MT+ +VTK W+YQARYR+PV+ AP GSWVL EGVDASIMKTATLCN +YDEDVY+F+ L 
Sbjct: 522 MTIKEVTKLWIYQARYRIPVSSAPPGSWVLIEGVDASIMKTATLCNASYDEDVYIFRALK 581

Query: 42  FNILPVVKTATEPL 1
           FN LPVVKTATEPL
Sbjct: 582 FNTLPVVKTATEPL 595


>ref|XP_002889592.1| hypothetical protein ARALYDRAFT_470642 [Arabidopsis lyrata subsp.
           lyrata] gi|297335434|gb|EFH65851.1| hypothetical protein
           ARALYDRAFT_470642 [Arabidopsis lyrata subsp. lyrata]
          Length = 987

 Score =  125 bits (314), Expect = 5e-27
 Identities = 57/74 (77%), Positives = 65/74 (87%)
 Frame = -2

Query: 222 MTVNKVTKQWVYQARYRVPVAKAPAGSWVLTEGVDASIMKTATLCNVNYDEDVYLFKPLL 43
           MT+ +VTK W+YQARYR+PV+ AP GSWVL EGVDASIMKTATLCN +YDEDVY+F+ L 
Sbjct: 536 MTIKEVTKLWIYQARYRIPVSSAPPGSWVLIEGVDASIMKTATLCNASYDEDVYIFRALQ 595

Query: 42  FNILPVVKTATEPL 1
           FN LPVVKTATEPL
Sbjct: 596 FNTLPVVKTATEPL 609