BLASTX nr result

ID: Coptis25_contig00010484 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010484
         (292 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271639.2| PREDICTED: uncharacterized protein LOC100242...    96   4e-18
ref|XP_002312673.1| predicted protein [Populus trichocarpa] gi|2...    96   4e-18
emb|CBI18643.3| unnamed protein product [Vitis vinifera]               95   7e-18
ref|XP_002315668.1| predicted protein [Populus trichocarpa] gi|2...    95   7e-18
emb|CAN80873.1| hypothetical protein VITISV_004539 [Vitis vinifera]    95   7e-18

>ref|XP_002271639.2| PREDICTED: uncharacterized protein LOC100242640 isoform 2 [Vitis
           vinifera]
          Length = 188

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 47/66 (71%), Positives = 52/66 (78%)
 Frame = +2

Query: 95  SSSPKNPGNTIKFLISYGGKILPRFTDGKLRYHGGETRVVTIDRSITFTELLIKLGELNG 274
           S S      TIKFL SYGGKILPR+ DGKLRYHGGETRV+ +DRSI+F ELL+KLGEL G
Sbjct: 8   SRSMVTSNQTIKFLCSYGGKILPRYPDGKLRYHGGETRVLAVDRSISFAELLVKLGELCG 67

Query: 275 SSVSLR 292
            SV LR
Sbjct: 68  KSVCLR 73


>ref|XP_002312673.1| predicted protein [Populus trichocarpa] gi|222852493|gb|EEE90040.1|
           predicted protein [Populus trichocarpa]
          Length = 191

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 46/64 (71%), Positives = 54/64 (84%)
 Frame = +2

Query: 101 SPKNPGNTIKFLISYGGKILPRFTDGKLRYHGGETRVVTIDRSITFTELLIKLGELNGSS 280
           +P +   TIKFL SYGGKI+PRF DGKLRY GGETRV+ +DRSI+F ELL+KLGEL G+S
Sbjct: 15  APSSAPATIKFLCSYGGKIIPRFPDGKLRYQGGETRVIGVDRSISFAELLLKLGELCGTS 74

Query: 281 VSLR 292
           VSLR
Sbjct: 75  VSLR 78


>emb|CBI18643.3| unnamed protein product [Vitis vinifera]
          Length = 185

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 45/57 (78%), Positives = 50/57 (87%)
 Frame = +2

Query: 122 TIKFLISYGGKILPRFTDGKLRYHGGETRVVTIDRSITFTELLIKLGELNGSSVSLR 292
           TIKFL SYGGKILPR+ DGKLRYHGGETRV+ +DRSI+F ELL+KLGEL G SV LR
Sbjct: 7   TIKFLCSYGGKILPRYPDGKLRYHGGETRVLAVDRSISFAELLVKLGELCGKSVCLR 63


>ref|XP_002315668.1| predicted protein [Populus trichocarpa] gi|222864708|gb|EEF01839.1|
           predicted protein [Populus trichocarpa]
          Length = 188

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 44/57 (77%), Positives = 52/57 (91%)
 Frame = +2

Query: 122 TIKFLISYGGKILPRFTDGKLRYHGGETRVVTIDRSITFTELLIKLGELNGSSVSLR 292
           TIKFL SYGGKI+PRF DGKLRYHGGETRV+ ++RSI+F ELL+KLGEL G+SV+LR
Sbjct: 1   TIKFLCSYGGKIIPRFPDGKLRYHGGETRVLGVERSISFAELLLKLGELRGTSVNLR 57


>emb|CAN80873.1| hypothetical protein VITISV_004539 [Vitis vinifera]
          Length = 185

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 45/57 (78%), Positives = 50/57 (87%)
 Frame = +2

Query: 122 TIKFLISYGGKILPRFTDGKLRYHGGETRVVTIDRSITFTELLIKLGELNGSSVSLR 292
           TIKFL SYGGKILPR+ DGKLRYHGGETRV+ +DRSI+F ELL+KLGEL G SV LR
Sbjct: 7   TIKFLCSYGGKILPRYPDGKLRYHGGETRVLAVDRSISFAELLVKLGELCGKSVCLR 63


Top