BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010461
         (1181 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thalia...    88   4e-15
ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis ...    88   5e-15
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...    87   8e-15
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...    87   1e-14
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...    87   1e-14

>ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thaliana]
            gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
            thaliana] gi|7269807|emb|CAB79667.1| putative protein
            [Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
            putative reverse transcriptase/RNA-dependent DNA
            polymerase [Arabidopsis thaliana]
            gi|332660185|gb|AEE85585.1| Ribonuclease H-like protein
            [Arabidopsis thaliana]
          Length = 575

 Score = 88.2 bits (217), Expect = 4e-15
 Identities = 86/346 (24%), Positives = 143/346 (41%), Gaps = 11/346 (3%)
 Frame = -1

Query: 1100 DHIIWPATKNRELTVKSAYVFLTKQDNISFSS------SFNPLSMKNLWKLHLDAAT*LF 939
            D   W  T + + TVKS Y  LT+  N   S       S NP+  K +WK         F
Sbjct: 211  DSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQK-IWKSQTSPKIQHF 269

Query: 938  IWKLYIGGLPTGDVLHKFKFKGDISCSFCQKCIETASHVFFSCTWIKMMWYVSNAMLDIN 759
            +WK     LP    L       + +C  C  C ET +H+ F CT+ ++ W +S+  + I 
Sbjct: 270  LWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISS--IPIP 327

Query: 758  VHPDWNVKEWINQF-IFWCSSKDEDIYRRGYLCLFILYELWLARNKARMECRPIELKSIL 582
            +  +W    ++N + +F   + +    +   L  ++L+ LW  RN+     R    + +L
Sbjct: 328  LGGEWADSIYVNLYWVFNLGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVL 387

Query: 581  NFSDMKREITRL---AFLSITYPGLPLSFNIIXXXXXXXXWVKVNFNVAFDRSHFSAAVG 411
              ++   E  R+   A    T P +  S +          WVK N +  ++R +    +G
Sbjct: 388  RRAEDDLEEWRIRTEAESCGTKPQVNRS-SCGRWRPPPHQWVKCNTDATWNRDNERCGIG 446

Query: 410  VVVRNAEGVILGAAFRRF-SANDPEQAELIGAEVAILLALRLNLCFVILEGDCQTLMSAL 234
             V+RN +G +     R         +AEL     A+L   R    +VI E D Q L+  L
Sbjct: 447  WVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWAVLSLSRFQYNYVIFESDSQVLIEIL 506

Query: 233  KTCNSSLLG*NSFFVFQHIFALAAGLDKFVFSWVSRTGNGFAHGLA 96
               N+  +  +     Q +  L +   +  F ++ R GN  A  +A
Sbjct: 507  ---NNDEIWPSLKPTIQDLQRLLSQFTEVKFVFIPREGNTLAERVA 549


>ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis thaliana]
            gi|6682231|gb|AAF23283.1|AC016661_8 putative non-LTR
            reverse transcriptase [Arabidopsis thaliana]
            gi|332641254|gb|AEE74775.1| RNase H domain-containing
            protein [Arabidopsis thaliana]
          Length = 484

 Score = 87.8 bits (216), Expect = 5e-15
 Identities = 86/354 (24%), Positives = 150/354 (42%), Gaps = 13/354 (3%)
 Frame = -1

Query: 1112 SGSPDHIIWPATKNRELTVKSAYVFLTKQDNISFSSSFNP---LSMKN-LWKLHLDAAT* 945
            S  PD IIW      E TV+S Y  LT   + +  +   P   + +K  +W L +     
Sbjct: 113  SKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLK 172

Query: 944  LFIWKLYIGGLPTGDVLHKFKFKGDISCSFCQKCIETASHVFFSCTWIKMMWYVSNAMLD 765
             F+W+     L T + L     + D SC  C +  E+ +H  F+C +  M W +S++ L 
Sbjct: 173  HFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLI 232

Query: 764  INVHPDWNVKEWINQFIFWCSSKDEDIYRRGYLCLFILYELWLARNKARM-ECRPIELKS 588
             N     + +E I+  + +        + +  L +++++ +W ARN     + R    K+
Sbjct: 233  RNQLMSNDFEENISNILNFVQDTTMSDFHK-LLPVWLIWRIWKARNNVVFNKFRESPSKT 291

Query: 587  ILNFSDMKREITRL--AFLSITYPGLPLSFNIIXXXXXXXXWVKVNFNVAFDRSHFSAAV 414
            +L+      +      +      P   ++ N I        +VK NF+  FD     A  
Sbjct: 292  VLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATG 351

Query: 413  GVVVRNAEGV-ILGAAFRRFSANDPEQAELIGAEVAILLALRLNLCFVILEGDCQTLMSA 237
            G ++RN  G  I   + +    ++P +AE      A+          V +EGDCQTL++ 
Sbjct: 352  GWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINL 411

Query: 236  LK--TCNSSLLG*NSFFVFQHIFALAAGLDKFV---FSWVSRTGNGFAHGLASW 90
            +   + +SSL          H+  ++   +KF    F ++ R GN  AH LA +
Sbjct: 412  INGISFHSSLA--------NHLEDISFWANKFASIQFGFIRRKGNKLAHVLAKY 457


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1524

 Score = 87.0 bits (214), Expect = 8e-15
 Identities = 85/354 (24%), Positives = 150/354 (42%), Gaps = 13/354 (3%)
 Frame = -1

Query: 1112 SGSPDHIIWPATKNRELTVKSAYVFLTKQDNISFSSSFNP---LSMKN-LWKLHLDAAT* 945
            S  PD IIW      E TV+S Y  LT   + +  +   P   + +K  +W L +     
Sbjct: 1153 SKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLK 1212

Query: 944  LFIWKLYIGGLPTGDVLHKFKFKGDISCSFCQKCIETASHVFFSCTWIKMMWYVSNAMLD 765
             F+W+     L T + L     + D  C  C +  E+ +H  F+C +  M W++S++ L 
Sbjct: 1213 HFLWRALSQALATTERLTTRGMRIDPICPRCHRENESINHALFTCPFATMAWWLSDSSLI 1272

Query: 764  INVHPDWNVKEWINQFIFWCSSKDEDIYRRGYLCLFILYELWLARNKARM-ECRPIELKS 588
             N     + +E I+  + +        + +  L +++++ +W ARN     + R    K+
Sbjct: 1273 RNQLMSNDFEENISNILNFVQDTTMSDFHK-LLPVWLIWRIWKARNNVVFNKFRESPSKT 1331

Query: 587  ILNFSDMKREITRL--AFLSITYPGLPLSFNIIXXXXXXXXWVKVNFNVAFDRSHFSAAV 414
            +L+      +      +      P   ++ N I        +VK NF+  FD     A  
Sbjct: 1332 VLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATG 1391

Query: 413  GVVVRNAEGV-ILGAAFRRFSANDPEQAELIGAEVAILLALRLNLCFVILEGDCQTLMSA 237
            G ++RN  G  I   + +    ++P +AE      A+          V +EGDCQTL++ 
Sbjct: 1392 GWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINL 1451

Query: 236  LK--TCNSSLLG*NSFFVFQHIFALAAGLDKFV---FSWVSRTGNGFAHGLASW 90
            +   + +SSL          H+  ++   +KF    F ++ R GN  AH LA +
Sbjct: 1452 INGISFHSSLA--------NHLEDISFWANKFASIQFGFIRRKGNKLAHVLAKY 1497


>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score = 86.7 bits (213), Expect = 1e-14
 Identities = 85/350 (24%), Positives = 142/350 (40%), Gaps = 4/350 (1%)
 Frame = -1

Query: 1103 PDHIIWPATKNRELTVKSAYVFLTKQDNISFSSSFNPLSMK---NLWKLHLDAAT*LFIW 933
            PD  +W  +KN + TV+SAY     +D  +  S+    ++K    +WK  +     LF W
Sbjct: 1009 PDQWMWMMSKNGQFTVRSAYYHELLEDRKTGPSTSRGPNLKLWQKIWKAKIPPKVKLFSW 1068

Query: 932  KLYIGGLPTGDVLHKFKFKGDISCSFCQKCIETASHVFFSCTWIKMMWYVSNAMLDINVH 753
            K    GL     + K     D +C  C +  ET  H+ + C      WY+S   +     
Sbjct: 1069 KAIHNGLAVYTNMRKRGMNIDGACPRCGEKEETTEHLIWGCDESSRAWYISPLRIHTGNI 1128

Query: 752  PDWNVKEWINQFIFWCSSKDEDIYRRGYLCLFILYELWLARNKARMECRPIELKSILNFS 573
               + + W+   +   + KD + +    L   I + +WL RNK   E + +  + ++  +
Sbjct: 1129 EAGSFRIWVESLL--DTHKDTEWWA---LFWMICWNIWLGRNKWVFEKKKLAFQEVVERA 1183

Query: 572  DMKREITRLAFLSITYPGLPLSFNIIXXXXXXXXWVKVNFNVAFDRSHFSAAVGVVVRNA 393
             ++  +      + T P   L+ +           VK+N + A  + H    +G VVR+A
Sbjct: 1184 -VRGVMEFEEECAHTSPVETLNTHENGWSVPPVGMVKLNVDAAVFK-HVGIGMGGVVRDA 1241

Query: 392  EG-VILGAAFRRFSANDPEQAELIGAEVAILLALRLNLCFVILEGDCQTLMSALKTCNSS 216
            EG V+L      ++  DP  AE       + +A       +++E DC+ L   L+   S 
Sbjct: 1242 EGDVLLATCCGGWAMEDPAMAEACSLRYGLKVAYEAGFRNLVVEMDCKKLFLQLRGKASD 1301

Query: 215  LLG*NSFFVFQHIFALAAGLDKFVFSWVSRTGNGFAHGLASWASKQIPGR 66
            +       V   I  LA+     VF  V R  N  AH LA      +  R
Sbjct: 1302 VTPFGR--VVDDILYLASKCSNVVFEHVKRHCNKVAHLLAQMCKNAMEKR 1349


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1750

 Score = 86.7 bits (213), Expect = 1e-14
 Identities = 85/354 (24%), Positives = 150/354 (42%), Gaps = 13/354 (3%)
 Frame = -1

Query: 1112 SGSPDHIIWPATKNRELTVKSAYVFLTKQDNISFSSSFNP---LSMKN-LWKLHLDAAT* 945
            S  PD IIW      E TV+S Y  LT   + +  +   P   + +K  +W L +     
Sbjct: 1379 SKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLK 1438

Query: 944  LFIWKLYIGGLPTGDVLHKFKFKGDISCSFCQKCIETASHVFFSCTWIKMMWYVSNAMLD 765
             F+W+     L T + L     + D SC  C +  E+ +H  F+C +  M W +S++ L 
Sbjct: 1439 HFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLI 1498

Query: 764  INVHPDWNVKEWINQFIFWCSSKDEDIYRRGYLCLFILYELWLARNKARM-ECRPIELKS 588
             N     + +E I+  + +        + +  L +++++ +W ARN     + R    K+
Sbjct: 1499 RNQLMSNDFEENISNILNFVQDTTMSDFHK-LLPVWLIWRIWKARNNVVFNKFRESPSKT 1557

Query: 587  ILNFSDMKREITRL--AFLSITYPGLPLSFNIIXXXXXXXXWVKVNFNVAFDRSHFSAAV 414
            +L+      +      +      P   ++ N I        +VK NF+  FD     A  
Sbjct: 1558 VLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATG 1617

Query: 413  GVVVRNAEGV-ILGAAFRRFSANDPEQAELIGAEVAILLALRLNLCFVILEGDCQTLMSA 237
            G ++RN  G  I   + +    ++P +AE      A+          V +EGDCQTL++ 
Sbjct: 1618 GWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINL 1677

Query: 236  LK--TCNSSLLG*NSFFVFQHIFALAAGLDKFV---FSWVSRTGNGFAHGLASW 90
            +   + +SSL          H+  ++   +KF    F ++ + GN  AH LA +
Sbjct: 1678 INGISFHSSLA--------NHLEDISFWANKFASIQFGFIRKKGNKLAHVLAKY 1723