BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010431
         (362 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002298340.1| predicted protein [Populus trichocarpa] gi|2...    75   5e-12
ref|XP_003543528.1| PREDICTED: transcription initiation factor I...    65   7e-09
ref|XP_003543527.1| PREDICTED: transcription initiation factor I...    65   7e-09
ref|XP_003537974.1| PREDICTED: uncharacterized protein LOC100800...    63   3e-08
ref|XP_002520518.1| protein with unknown function [Ricinus commu...    62   4e-08

>ref|XP_002298340.1| predicted protein [Populus trichocarpa] gi|222845598|gb|EEE83145.1|
           predicted protein [Populus trichocarpa]
          Length = 409

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 54/118 (45%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
 Frame = +1

Query: 19  PGVGPTPVHDLNVXXXXXXXXXXXXAEXXXXXXXXXXXXXXXXXGTAQTPLPGTVQPPLP 198
           PG G TPVHDLNV            AE                 G+AQTPLPG VQ PLP
Sbjct: 68  PG-GLTPVHDLNVPYEGTEEYETPTAEILFPPTPLP--------GSAQTPLPGNVQTPLP 118

Query: 199 GNVQTPPLPGSGEN-LMYQLST--PSDYSSG-HESVTPNEVKPGMPSPYMQTPSPWMN 360
           GNV T PLPGS +N  MY +ST   SDY +   ++    +VK G PS +MQ+PSP M+
Sbjct: 119 GNVPT-PLPGSVDNSSMYNISTGSSSDYPTPVSDAGGSTDVKAGRPSHFMQSPSPLMH 175


>ref|XP_003543528.1| PREDICTED: transcription initiation factor IIA large subunit-like
           isoform 2 [Glycine max]
          Length = 384

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 47/124 (37%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
 Frame = +1

Query: 4   PTNGAPGVGPTPVHDLNVXXXXXXXXXXXXAEXXXXXXXXXXXXXXXXXGTAQTPLPGTV 183
           PT G P    TPVHDLNV                                  +TP    +
Sbjct: 65  PTPGGP---ITPVHDLNVPYEGTDEY--------------------------ETPTADML 95

Query: 184 QPPLPGNVQTP---PLPGSGENLMYQLST-PSDY-SSGHESVTPNEVKPGMPSPYMQTPS 348
            PP P  +QTP   PLPG+G+N  Y + T PSDY SSG+++    + K   P+PYMQ+PS
Sbjct: 96  FPPTP--LQTPIQTPLPGTGDNSTYNIPTGPSDYPSSGNDTGGNADGKGARPAPYMQSPS 153

Query: 349 PWMN 360
           PWMN
Sbjct: 154 PWMN 157


>ref|XP_003543527.1| PREDICTED: transcription initiation factor IIA large subunit-like
           isoform 1 [Glycine max]
          Length = 391

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 47/124 (37%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
 Frame = +1

Query: 4   PTNGAPGVGPTPVHDLNVXXXXXXXXXXXXAEXXXXXXXXXXXXXXXXXGTAQTPLPGTV 183
           PT G P    TPVHDLNV                                  +TP    +
Sbjct: 65  PTPGGP---ITPVHDLNVPYEGTDEY--------------------------ETPTADML 95

Query: 184 QPPLPGNVQTP---PLPGSGENLMYQLST-PSDY-SSGHESVTPNEVKPGMPSPYMQTPS 348
            PP P  +QTP   PLPG+G+N  Y + T PSDY SSG+++    + K   P+PYMQ+PS
Sbjct: 96  FPPTP--LQTPIQTPLPGTGDNSTYNIPTGPSDYPSSGNDTGGNADGKGARPAPYMQSPS 153

Query: 349 PWMN 360
           PWMN
Sbjct: 154 PWMN 157


>ref|XP_003537974.1| PREDICTED: uncharacterized protein LOC100800601 [Glycine max]
          Length = 392

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 48/125 (38%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
 Frame = +1

Query: 4   PTNGAPGVGPTPVHDLNVXXXXXXXXXXXXAEXXXXXXXXXXXXXXXXXGTAQTPLPGTV 183
           PT G P    TPVHDLN+                                  +TP    +
Sbjct: 65  PTPGGP---ITPVHDLNMPYEGTEEY--------------------------ETPTAEML 95

Query: 184 QPPLPGNVQTP---PLPGSGENLMYQLST-PSDY-SSGHESVTPNEVKPGMPSPYMQ-TP 345
            PP P  +QTP   PLPG+ +N MY + T PSDY S+G+E    NE+K G P PYMQ  P
Sbjct: 96  FPPTP--LQTPLQTPLPGTVDNSMYNIPTGPSDYPSAGNEPGANNEIKGGRPGPYMQPPP 153

Query: 346 SPWMN 360
           SPW N
Sbjct: 154 SPWTN 158


>ref|XP_002520518.1| protein with unknown function [Ricinus communis]
           gi|223540360|gb|EEF41931.1| protein with unknown
           function [Ricinus communis]
          Length = 383

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 42/114 (36%), Positives = 46/114 (40%)
 Frame = +1

Query: 19  PGVGPTPVHDLNVXXXXXXXXXXXXAEXXXXXXXXXXXXXXXXXGTAQTPLPGTVQPPLP 198
           PG   TPVHDLNV            AE                     TPLPGT Q PLP
Sbjct: 68  PGGVITPVHDLNVPYEGTEEYETPTAEILFPP----------------TPLPGTAQTPLP 111

Query: 199 GNVQTPPLPGSGENLMYQLSTPSDYSSGHESVTPNEVKPGMPSPYMQTPSPWMN 360
           G+V    +         +  TP   S G       E K G PSPYMQ PSPW+N
Sbjct: 112 GSVDNSSMYNIPTGPTSEYPTPVSDSGGS-----TEAKAGRPSPYMQPPSPWIN 160