BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010385
         (1309 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284178.1| PREDICTED: cyclin-H1-1 [Vitis vinifera] gi|2...   381   e-107
ref|XP_003526926.1| PREDICTED: cyclin-H1-1 isoform 1 [Glycine max]    351   7e-99
gb|ACU23520.1| unknown [Glycine max]                                  351   2e-98
ref|XP_003550146.1| PREDICTED: cyclin-H1-1-like isoform 1 [Glyci...   350   3e-97
gb|AAP03415.1| cyclin H-1 [Oryza sativa Japonica Group]               353   5e-95

>ref|XP_002284178.1| PREDICTED: cyclin-H1-1 [Vitis vinifera] gi|296089659|emb|CBI39478.3|
            unnamed protein product [Vitis vinifera]
          Length = 335

 Score =  381 bits (979), Expect(2) = e-107
 Identities = 187/243 (76%), Positives = 214/243 (88%), Gaps = 3/243 (1%)
 Frame = -2

Query: 1203 MADFQTSTHRAKWIFTPEELMEKYHVSNQRAMQALLQYGSTRIEVNADGTLTYPETKIDP 1024
            MADFQTSTHR+KWIFTP++L+EKY  +NQRA Q L +YG TRIEV+ADG+L YPE +I  
Sbjct: 1    MADFQTSTHRSKWIFTPQDLIEKYKAANQRAKQTLEKYGVTRIEVDADGSLQYPEPQISA 60

Query: 1023 -NKSEKGS--KPLSIEDEQLMRVFYEQKIQEVCRAFGFPNKIQGTAIIYFKRFYLQWSVM 853
             + +EK S  KPL+ E+E+ MR FYE KIQEVC AF FP+KIQ TA+IY+KRFYLQWSVM
Sbjct: 61   KDNAEKRSRPKPLNFEEERFMRSFYEYKIQEVCAAFSFPHKIQATALIYYKRFYLQWSVM 120

Query: 852  EHHPKNIMLTCIYTSCKIEENHVSAEELGKGINQDHQMILNNEMIVLQGLGFDLIVYAPY 673
            EHHPK+IMLTCIY +CKIEENHVSAEELGKGI QDHQMILNNEMIVLQ L FDLIV+APY
Sbjct: 121  EHHPKHIMLTCIYAACKIEENHVSAEELGKGIAQDHQMILNNEMIVLQSLDFDLIVFAPY 180

Query: 672  RSIEGFIDDIEDFCQAKNDQLQMLKDLQETAKKEVDRIMLTDAPLLFPPGQLALAALRRS 493
            RS+EGF+DD+E+FCQAKND+LQMLKDL +TAK EVD+ MLTDAPLLFPPGQLALAALRRS
Sbjct: 181  RSVEGFVDDMEEFCQAKNDRLQMLKDLHKTAKMEVDKTMLTDAPLLFPPGQLALAALRRS 240

Query: 492  NEV 484
            NEV
Sbjct: 241  NEV 243



 Score = 35.8 bits (81), Expect(2) = e-107
 Identities = 18/31 (58%), Positives = 22/31 (70%)
 Frame = -3

Query: 488 RYLGSIISRQQSMHTSSELIESLDLINSLVL 396
           RYL SI+SRQ   H  SEL ESL+ I+S V+
Sbjct: 251 RYLSSILSRQDFSHAFSELTESLNAIDSWVM 281


>ref|XP_003526926.1| PREDICTED: cyclin-H1-1 isoform 1 [Glycine max]
          Length = 335

 Score =  351 bits (901), Expect(2) = 7e-99
 Identities = 171/241 (70%), Positives = 206/241 (85%), Gaps = 3/241 (1%)
 Frame = -2

Query: 1203 MADFQTSTHRAKWIFTPEELMEKYHVSNQRAMQALLQYGSTRIEVNADGTLTYPETKI-- 1030
            MADFQTSTHRAKWIF+P++L+EKY  +NQRA Q L + G+T +EV+ DG+L+YPE ++  
Sbjct: 1    MADFQTSTHRAKWIFSPQQLVEKYRAANQRAKQILEKCGATLMEVDVDGSLSYPEPQMTA 60

Query: 1029 -DPNKSEKGSKPLSIEDEQLMRVFYEQKIQEVCRAFGFPNKIQGTAIIYFKRFYLQWSVM 853
             D  +    +KPL+IE+EQ ++VFYE K+QEVC  F FP+KIQ TA+IYFKRFYLQWSVM
Sbjct: 61   KDSAEKHSRTKPLTIEEEQCIKVFYENKLQEVCNNFRFPHKIQATALIYFKRFYLQWSVM 120

Query: 852  EHHPKNIMLTCIYTSCKIEENHVSAEELGKGINQDHQMILNNEMIVLQGLGFDLIVYAPY 673
            EH PK+IMLTCIY +CKIEENHVSAEELGKGI+QDHQMILNNEMIV Q L FDLIVYAPY
Sbjct: 121  EHQPKHIMLTCIYAACKIEENHVSAEELGKGISQDHQMILNNEMIVYQSLEFDLIVYAPY 180

Query: 672  RSIEGFIDDIEDFCQAKNDQLQMLKDLQETAKKEVDRIMLTDAPLLFPPGQLALAALRRS 493
            RS+EGFI+D+E+F  A ++QL+MLK LQETA+ EVD++MLTDAPLLFPPGQLALAALR S
Sbjct: 181  RSVEGFINDMEEFFNAGDNQLEMLKTLQETARFEVDKMMLTDAPLLFPPGQLALAALRNS 240

Query: 492  N 490
            N
Sbjct: 241  N 241



 Score = 37.4 bits (85), Expect(2) = 7e-99
 Identities = 19/29 (65%), Positives = 21/29 (72%)
 Frame = -3

Query: 485 YLGSIISRQQSMHTSSELIESLDLINSLV 399
           YL  I SR+ SMHT SEL ESLD I+S V
Sbjct: 252 YLRGIFSRENSMHTMSELSESLDAIDSWV 280


>gb|ACU23520.1| unknown [Glycine max]
          Length = 335

 Score =  351 bits (901), Expect(2) = 2e-98
 Identities = 171/241 (70%), Positives = 206/241 (85%), Gaps = 3/241 (1%)
 Frame = -2

Query: 1203 MADFQTSTHRAKWIFTPEELMEKYHVSNQRAMQALLQYGSTRIEVNADGTLTYPETKI-- 1030
            MADFQTSTHRAKWIF+P++L+EKY  +NQRA Q L + G+T +EV+ DG+L+YPE ++  
Sbjct: 1    MADFQTSTHRAKWIFSPQQLVEKYRAANQRAKQILEKCGATLMEVDVDGSLSYPEPQMTA 60

Query: 1029 -DPNKSEKGSKPLSIEDEQLMRVFYEQKIQEVCRAFGFPNKIQGTAIIYFKRFYLQWSVM 853
             D  +    +KPL+IE+EQ ++VFYE K+QEVC  F FP+KIQ TA+IYFKRFYLQWSVM
Sbjct: 61   KDSAEKHSRTKPLTIEEEQCIKVFYENKLQEVCNNFRFPHKIQATALIYFKRFYLQWSVM 120

Query: 852  EHHPKNIMLTCIYTSCKIEENHVSAEELGKGINQDHQMILNNEMIVLQGLGFDLIVYAPY 673
            EH PK+IMLTCIY +CKIEENHVSAEELGKGI+QDHQMILNNEMIV Q L FDLIVYAPY
Sbjct: 121  EHQPKHIMLTCIYAACKIEENHVSAEELGKGISQDHQMILNNEMIVYQSLEFDLIVYAPY 180

Query: 672  RSIEGFIDDIEDFCQAKNDQLQMLKDLQETAKKEVDRIMLTDAPLLFPPGQLALAALRRS 493
            RS+EGFI+D+E+F  A ++QL+MLK LQETA+ EVD++MLTDAPLLFPPGQLALAALR S
Sbjct: 181  RSVEGFINDMEEFFNAGDNQLEMLKTLQETARFEVDKMMLTDAPLLFPPGQLALAALRNS 240

Query: 492  N 490
            N
Sbjct: 241  N 241



 Score = 35.8 bits (81), Expect(2) = 2e-98
 Identities = 18/29 (62%), Positives = 20/29 (68%)
 Frame = -3

Query: 485 YLGSIISRQQSMHTSSELIESLDLINSLV 399
           Y   I SR+ SMHT SEL ESLD I+S V
Sbjct: 252 YFRGIFSRENSMHTMSELSESLDAIDSWV 280


>ref|XP_003550146.1| PREDICTED: cyclin-H1-1-like isoform 1 [Glycine max]
          Length = 335

 Score =  350 bits (897), Expect(2) = 3e-97
 Identities = 171/241 (70%), Positives = 204/241 (84%), Gaps = 3/241 (1%)
 Frame = -2

Query: 1203 MADFQTSTHRAKWIFTPEELMEKYHVSNQRAMQALLQYGSTRIEVNADGTLTYPE---TK 1033
            MADFQTSTHRAKWIF+P++L+EKY  +NQRA Q L + G+T +EV+ +G+L+YPE   T 
Sbjct: 1    MADFQTSTHRAKWIFSPQQLVEKYRAANQRAKQILEKCGATLMEVDVNGSLSYPEPHMTA 60

Query: 1032 IDPNKSEKGSKPLSIEDEQLMRVFYEQKIQEVCRAFGFPNKIQGTAIIYFKRFYLQWSVM 853
             D  +    +KPLSIE+EQ ++VFYE K+QEV   F FP+KIQ TA+IYFKRFYLQWSVM
Sbjct: 61   KDSAEKHYRTKPLSIEEEQCIKVFYENKLQEVYNNFRFPHKIQATALIYFKRFYLQWSVM 120

Query: 852  EHHPKNIMLTCIYTSCKIEENHVSAEELGKGINQDHQMILNNEMIVLQGLGFDLIVYAPY 673
            EH PK+IMLTC+Y +CKIEENHVSAEELGKGI+QDHQMILNNEMIV Q L FDLIVYAPY
Sbjct: 121  EHQPKHIMLTCVYAACKIEENHVSAEELGKGISQDHQMILNNEMIVYQSLEFDLIVYAPY 180

Query: 672  RSIEGFIDDIEDFCQAKNDQLQMLKDLQETAKKEVDRIMLTDAPLLFPPGQLALAALRRS 493
            RS+EGFI+D+E+FC A +DQL+MLK LQETA+ EVD++MLTDAPLLFPPGQLALAAL  S
Sbjct: 181  RSVEGFINDVEEFCNAGDDQLEMLKTLQETARFEVDKMMLTDAPLLFPPGQLALAALSNS 240

Query: 492  N 490
            N
Sbjct: 241  N 241



 Score = 33.5 bits (75), Expect(2) = 3e-97
 Identities = 17/29 (58%), Positives = 20/29 (68%)
 Frame = -3

Query: 485 YLGSIISRQQSMHTSSELIESLDLINSLV 399
           YL  I S + SMHT SEL ESL+ I+S V
Sbjct: 252 YLRGIFSHENSMHTMSELSESLNAIDSWV 280


>gb|AAP03415.1| cyclin H-1 [Oryza sativa Japonica Group]
          Length = 328

 Score =  353 bits (906), Expect = 5e-95
 Identities = 176/281 (62%), Positives = 224/281 (79%), Gaps = 4/281 (1%)
 Frame = -2

Query: 1203 MADFQTSTHRAKWIFTPEELMEKYHVSNQRAMQALLQYGSTRIEVN-ADGTLTYPETKID 1027
            MADF+TSTHR +WIF   +LM+++  +NQRA + L+QYG+TR++V+  DG+L+YPE   D
Sbjct: 1    MADFRTSTHRERWIFQTNDLMDRWGAANQRATETLVQYGTTRLKVDPVDGSLSYPEPAPD 60

Query: 1026 PNKSEKGSKPLSIEDEQLMRVFYEQKIQEVCRAFGFPNKIQGTAIIYFKRFYLQWSVMEH 847
                  G KPLS E+E+LMRVFYEQKIQEVC AF FP+KIQ TAIIYFKRFYLQWSVMEH
Sbjct: 61   HVVGSSGVKPLSCEEERLMRVFYEQKIQEVCSAFKFPHKIQATAIIYFKRFYLQWSVMEH 120

Query: 846  HPKNIMLTCIYTSCKIEENHVSAEELGKGINQDHQMILNNEMIVLQGLGFDLIVYAPYRS 667
            HPK+IMLTCIY+SCK+EENHVSAEELGKGI QDHQ+ILNNEMIVL+ L FDLIVYAPYRS
Sbjct: 121  HPKHIMLTCIYSSCKVEENHVSAEELGKGIQQDHQIILNNEMIVLKSLDFDLIVYAPYRS 180

Query: 666  IEGFIDDIEDFCQAKNDQLQMLKDLQETAKKEVDRIMLTDAPLLFPPGQLALAALRRSNE 487
            IEGF+DD+EDFC+A N + Q L+DL++TA  +VD++MLTDAPLL+ PGQLALAAL +SN+
Sbjct: 181  IEGFVDDMEDFCRAGNGEHQRLQDLRQTAISQVDKMMLTDAPLLYTPGQLALAALHKSND 240

Query: 486  ---VLG*HHLSSTVYAHQFRAN*IFGLDKLSGTISRISFLK 373
               +L       +V++ Q        +++  G+I+ I++L+
Sbjct: 241  MHKILNFERYLESVFSRQHSD---CPIEQFVGSINMINYLQ 278