BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010382
         (307 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519397.1| plant RNA cleavage stimulation factor, putat...   109   2e-22
ref|XP_004165244.1| PREDICTED: cleavage stimulation factor subun...   107   1e-21
ref|XP_004144686.1| PREDICTED: cleavage stimulation factor subun...   107   1e-21
ref|XP_002265193.1| PREDICTED: cleavage stimulation factor subun...   107   1e-21
ref|XP_002892966.1| cleavage stimulation factor 77 [Arabidopsis ...   107   1e-21

>ref|XP_002519397.1| plant RNA cleavage stimulation factor, putative [Ricinus communis]
           gi|223541464|gb|EEF43014.1| plant RNA cleavage
           stimulation factor, putative [Ricinus communis]
          Length = 767

 Score =  109 bits (273), Expect = 2e-22
 Identities = 50/74 (67%), Positives = 60/74 (81%)
 Frame = +2

Query: 86  DKYNVEASDSLASQALVLPISDAVPIYEQLVTTFPTSLKYWKQYVEAYMAINNHDATKLI 265
           DKYNVEA+D LA+ A  LPI+ A PIYEQL++ FPT+ K+WKQYVEAYMA+NN DAT+ I
Sbjct: 23  DKYNVEAADVLANSAQHLPITQAAPIYEQLLSLFPTAAKFWKQYVEAYMAVNNDDATRQI 82

Query: 266 FSRSLFNCLHISLW 307
           FSR L NCL + LW
Sbjct: 83  FSRCLLNCLQVPLW 96


>ref|XP_004165244.1| PREDICTED: cleavage stimulation factor subunit 3-like [Cucumis
           sativus]
          Length = 340

 Score =  107 bits (267), Expect = 1e-21
 Identities = 47/73 (64%), Positives = 60/73 (82%)
 Frame = +2

Query: 89  KYNVEASDSLASQALVLPISDAVPIYEQLVTTFPTSLKYWKQYVEAYMAINNHDATKLIF 268
           KYNVE ++S+A++A  LPI +A P+YEQL+T +PT+ KYWKQYVEA+M +NN DAT+ IF
Sbjct: 76  KYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAAKYWKQYVEAHMVVNNDDATRQIF 135

Query: 269 SRSLFNCLHISLW 307
           SR L NCLHI LW
Sbjct: 136 SRCLLNCLHIPLW 148


>ref|XP_004144686.1| PREDICTED: cleavage stimulation factor subunit 3-like [Cucumis
           sativus]
          Length = 871

 Score =  107 bits (267), Expect = 1e-21
 Identities = 47/73 (64%), Positives = 60/73 (82%)
 Frame = +2

Query: 89  KYNVEASDSLASQALVLPISDAVPIYEQLVTTFPTSLKYWKQYVEAYMAINNHDATKLIF 268
           KYNVE ++S+A++A  LPI +A P+YEQL+T +PT+ KYWKQYVEA+M +NN DAT+ IF
Sbjct: 128 KYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAAKYWKQYVEAHMVVNNDDATRQIF 187

Query: 269 SRSLFNCLHISLW 307
           SR L NCLHI LW
Sbjct: 188 SRCLLNCLHIPLW 200


>ref|XP_002265193.1| PREDICTED: cleavage stimulation factor subunit 3 [Vitis vinifera]
           gi|297736046|emb|CBI24084.3| unnamed protein product
           [Vitis vinifera]
          Length = 769

 Score =  107 bits (267), Expect = 1e-21
 Identities = 49/74 (66%), Positives = 60/74 (81%)
 Frame = +2

Query: 86  DKYNVEASDSLASQALVLPISDAVPIYEQLVTTFPTSLKYWKQYVEAYMAINNHDATKLI 265
           DKYNVE ++ LA++A  LPIS+AVPIYEQL+T FPT+ KYW+QY+EA MA+NN +ATK I
Sbjct: 22  DKYNVETAEILANEAQHLPISEAVPIYEQLLTVFPTAAKYWRQYLEAQMAVNNDEATKQI 81

Query: 266 FSRSLFNCLHISLW 307
           FSR L NC  I LW
Sbjct: 82  FSRCLLNCFQIPLW 95


>ref|XP_002892966.1| cleavage stimulation factor 77 [Arabidopsis lyrata subsp. lyrata]
           gi|297338808|gb|EFH69225.1| cleavage stimulation factor
           77 [Arabidopsis lyrata subsp. lyrata]
          Length = 734

 Score =  107 bits (266), Expect = 1e-21
 Identities = 48/74 (64%), Positives = 60/74 (81%)
 Frame = +2

Query: 86  DKYNVEASDSLASQALVLPISDAVPIYEQLVTTFPTSLKYWKQYVEAYMAINNHDATKLI 265
           DKYNVE +++LA +AL LPI+ A PIYEQL++ +PTS +YWKQYVEA+MA+NN DATK I
Sbjct: 3   DKYNVEEAEALAKRALHLPIAQATPIYEQLLSLYPTSARYWKQYVEAHMAVNNDDATKQI 62

Query: 266 FSRSLFNCLHISLW 307
           FSR L  CL + LW
Sbjct: 63  FSRCLLTCLQVPLW 76