BLASTX nr result

ID: Coptis25_contig00010378 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010378
         (1397 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272762.1| PREDICTED: GATA transcription factor 5 [Viti...   228   2e-57
emb|CAN64003.1| hypothetical protein VITISV_037635 [Vitis vinifera]   222   2e-55
ref|XP_002313763.1| predicted protein [Populus trichocarpa] gi|2...   198   2e-48
emb|CBI38005.3| unnamed protein product [Vitis vinifera]              187   6e-45
ref|XP_002274872.1| PREDICTED: GATA transcription factor 5-like ...   187   6e-45

>ref|XP_002272762.1| PREDICTED: GATA transcription factor 5 [Vitis vinifera]
          Length = 338

 Score =  228 bits (582), Expect = 2e-57
 Identities = 129/228 (56%), Positives = 146/228 (64%), Gaps = 6/228 (2%)
 Frame = -3

Query: 1011 SELTVPADDVANLEWLSHFVEDSFSEFSLQHLVGKTELNPQTKNDKGSEMFIETPGLGPV 832
            +ELTVPADD+A+LEWLSHFVEDSFSE+S     G      Q + +   E   ETP     
Sbjct: 109  TELTVPADDLADLEWLSHFVEDSFSEYSAPFPHGTLTEKAQNQTENPPEP--ETPLQIKS 166

Query: 831  GVATSVPAKARSKRSRTGGRVWSLGSLPLTDXXXXXXXXXXXXXXXXSCLIFNNTGQNLD 652
             + T  PAKARSKR+RTGGRVWS+GS  LT+                  LI+ NT QN++
Sbjct: 167  CLKTPFPAKARSKRARTGGRVWSMGSPSLTESSSSSSSSSSSSLSSPW-LIYPNTCQNVE 225

Query: 651  MFSFMGXXXXXXXXXXXXPEAQ------QRRCSHCGVNKTPQWRTGPLGAKTLCNACGVR 490
             F                PEA         RCSHCGV KTPQWRTGPLGAKTLCNACGVR
Sbjct: 226  SFHSAVKPPAKKHKKRLDPEASGSAQPTPHRCSHCGVQKTPQWRTGPLGAKTLCNACGVR 285

Query: 489  YKSGRLLPEYRPAISPTFSSDVHSNNHRKVLEMRRKKEVTQPELAF*P 346
            YKSGRLLPEYRPA SPTFSS++HSN+HRKVLEMRRKKEVT+PE    P
Sbjct: 286  YKSGRLLPEYRPACSPTFSSEIHSNHHRKVLEMRRKKEVTRPESGLAP 333


>emb|CAN64003.1| hypothetical protein VITISV_037635 [Vitis vinifera]
          Length = 338

 Score =  222 bits (565), Expect = 2e-55
 Identities = 125/222 (56%), Positives = 143/222 (64%), Gaps = 6/222 (2%)
 Frame = -3

Query: 1011 SELTVPADDVANLEWLSHFVEDSFSEFSLQHLVGKTELNPQTKNDKGSEMFIETPGLGPV 832
            +ELTVPADD+A+LEWLSHFVEDSFSE+S     G      Q + +   E   ETP     
Sbjct: 109  TELTVPADDLADLEWLSHFVEDSFSEYSAPFPPGTLTEKAQNQTENPPEP--ETPLQIKS 166

Query: 831  GVATSVPAKARSKRSRTGGRVWSLGSLPLTDXXXXXXXXXXXXXXXXSCLIFNNTGQNLD 652
             + T  PAKARSKR+RTGGRVWS+GS  LT+                  LI+ NT QN++
Sbjct: 167  CLKTPFPAKARSKRARTGGRVWSMGSPSLTESSSSSSSSSSSSLSSPW-LIYPNTCQNVE 225

Query: 651  MFSFMGXXXXXXXXXXXXPEAQ------QRRCSHCGVNKTPQWRTGPLGAKTLCNACGVR 490
             F                PEA         RCSHCGV KT QWRTGPLGAKTLCNACGVR
Sbjct: 226  SFHSAVKPPAKKHKKRLDPEASGSAQXTPHRCSHCGVQKTXQWRTGPLGAKTLCNACGVR 285

Query: 489  YKSGRLLPEYRPAISPTFSSDVHSNNHRKVLEMRRKKEVTQP 364
            +KSGRLLPEYRPA SPTFSS++HSN+HRKVLEMRRKKEVT+P
Sbjct: 286  FKSGRLLPEYRPACSPTFSSEIHSNHHRKVLEMRRKKEVTRP 327


>ref|XP_002313763.1| predicted protein [Populus trichocarpa] gi|222850171|gb|EEE87718.1|
            predicted protein [Populus trichocarpa]
          Length = 329

 Score =  198 bits (504), Expect = 2e-48
 Identities = 116/228 (50%), Positives = 130/228 (57%), Gaps = 11/228 (4%)
 Frame = -3

Query: 1011 SELTVPADDVANLEWLSHFVEDSFSEFSLQHLVGKTELNPQTKNDKGSEM---FIETPGL 841
            SEL VP DD+A LEW+SHFV+DS S+ SL     K       KN    E    F +T  L
Sbjct: 101  SELAVPTDDIAELEWVSHFVDDSVSDVSLLVPACKGSSKRHAKNRFEPETKPTFAKTSCL 160

Query: 840  GPVGVATSVPAKARSKRSRTGGRVWSLGSLPLTDXXXXXXXXXXXXXXXXSCLIFNNTGQ 661
             P    + VP+KAR+KRSR  GR WS GS                      CL+  NT Q
Sbjct: 161  FP----SRVPSKARTKRSRPTGRTWSAGS-----NQSETPSSSTSSTSSMPCLVATNTVQ 211

Query: 660  NLDMFSFMGXXXXXXXXXXXXPEAQ--------QRRCSHCGVNKTPQWRTGPLGAKTLCN 505
              D  S++               +         QRRCSHC V KTPQWRTGPLGAKTLCN
Sbjct: 212  TADSLSWLSEQPMKISKKRPAVHSSGLMASTQFQRRCSHCQVQKTPQWRTGPLGAKTLCN 271

Query: 504  ACGVRYKSGRLLPEYRPAISPTFSSDVHSNNHRKVLEMRRKKEVTQPE 361
            ACGVRYKSGRL PEYRPA SPTFSS+VHSN+HRKVLEMRRKKEV   E
Sbjct: 272  ACGVRYKSGRLFPEYRPACSPTFSSEVHSNSHRKVLEMRRKKEVAGAE 319


>emb|CBI38005.3| unnamed protein product [Vitis vinifera]
          Length = 352

 Score =  187 bits (475), Expect = 6e-45
 Identities = 110/219 (50%), Positives = 129/219 (58%), Gaps = 5/219 (2%)
 Frame = -3

Query: 1005 LTVPADDVANLEWLSHFVEDSF-SEFSLQHLVGKTELNPQTKNDKGSEMFIETPG---LG 838
            L VPADD+ +LEWLSHFV+DS  SE SL        L P    +  S+   E P    L 
Sbjct: 144  LAVPADDLEHLEWLSHFVDDSSASELSL--------LCPAVTGNSPSKRCEEEPRPALLR 195

Query: 837  PVGVATSVPAKARSKRSRTGGRVWSLGSLPLTDXXXXXXXXXXXXXXXXSCLIFNNTGQN 658
                 T +PAK RSKR R+ GR W+ GS                     SCLIF NT  N
Sbjct: 196  TPLFPTPLPAKPRSKRHRSSGRAWAFGS-----HSPSSSPSSSSSSSSTSCLIFANTVHN 250

Query: 657  LDMFSFMGXXXXXXXXXXXXPEAQ-QRRCSHCGVNKTPQWRTGPLGAKTLCNACGVRYKS 481
            ++ F  +              ++Q QRRCSHC V KTPQWRTGPLG KTLCNACGVR+KS
Sbjct: 251  MESFYSLEKPPAKKPKKSPSADSQPQRRCSHCLVQKTPQWRTGPLGPKTLCNACGVRFKS 310

Query: 480  GRLLPEYRPAISPTFSSDVHSNNHRKVLEMRRKKEVTQP 364
            GRL PEYRPA SPTFS ++HSN+HRKVLE+RRKKE  +P
Sbjct: 311  GRLFPEYRPACSPTFSVEIHSNSHRKVLEIRRKKETAEP 349


>ref|XP_002274872.1| PREDICTED: GATA transcription factor 5-like [Vitis vinifera]
          Length = 317

 Score =  187 bits (475), Expect = 6e-45
 Identities = 110/219 (50%), Positives = 129/219 (58%), Gaps = 5/219 (2%)
 Frame = -3

Query: 1005 LTVPADDVANLEWLSHFVEDSF-SEFSLQHLVGKTELNPQTKNDKGSEMFIETPG---LG 838
            L VPADD+ +LEWLSHFV+DS  SE SL        L P    +  S+   E P    L 
Sbjct: 109  LAVPADDLEHLEWLSHFVDDSSASELSL--------LCPAVTGNSPSKRCEEEPRPALLR 160

Query: 837  PVGVATSVPAKARSKRSRTGGRVWSLGSLPLTDXXXXXXXXXXXXXXXXSCLIFNNTGQN 658
                 T +PAK RSKR R+ GR W+ GS                     SCLIF NT  N
Sbjct: 161  TPLFPTPLPAKPRSKRHRSSGRAWAFGS-----HSPSSSPSSSSSSSSTSCLIFANTVHN 215

Query: 657  LDMFSFMGXXXXXXXXXXXXPEAQ-QRRCSHCGVNKTPQWRTGPLGAKTLCNACGVRYKS 481
            ++ F  +              ++Q QRRCSHC V KTPQWRTGPLG KTLCNACGVR+KS
Sbjct: 216  MESFYSLEKPPAKKPKKSPSADSQPQRRCSHCLVQKTPQWRTGPLGPKTLCNACGVRFKS 275

Query: 480  GRLLPEYRPAISPTFSSDVHSNNHRKVLEMRRKKEVTQP 364
            GRL PEYRPA SPTFS ++HSN+HRKVLE+RRKKE  +P
Sbjct: 276  GRLFPEYRPACSPTFSVEIHSNSHRKVLEIRRKKETAEP 314


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