BLASTX nr result

ID: Coptis25_contig00010375 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010375
         (315 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36841.3| unnamed protein product [Vitis vinifera]              148   5e-34
ref|XP_002265012.1| PREDICTED: ABC transporter C family member 4...   148   5e-34
ref|XP_002301476.1| multidrug resistance protein ABC transporter...   147   7e-34
ref|XP_002523063.1| multidrug resistance-associated protein 2, 6...   145   3e-33
ref|XP_002321011.1| multidrug resistance protein ABC transporter...   144   6e-33

>emb|CBI36841.3| unnamed protein product [Vitis vinifera]
          Length = 1079

 Score =  148 bits (373), Expect = 5e-34
 Identities = 75/105 (71%), Positives = 88/105 (83%), Gaps = 4/105 (3%)
 Frame = +3

Query: 3   LDDVFSAVDAHTGSELFKECVRGALKNKTILLVTHQVEFLHNTNLILVMRDGVIVQSGKY 182
           LDDVFSAVDAHTG+++FKECVRGAL+NKTILLVTHQV+FLHN +LILVMRDG+IVQSGKY
Sbjct: 361 LDDVFSAVDAHTGTDIFKECVRGALRNKTILLVTHQVDFLHNVDLILVMRDGMIVQSGKY 420

Query: 183 NDLLEPGLDFGSLAATHKTSMELVE----MNNSKHFPKPPIRQKP 305
           NDLLE G+DF +L A H+TSMELVE       S++ PK P   +P
Sbjct: 421 NDLLESGMDFKALVAAHETSMELVEEAGPAITSENSPKLPQSPQP 465


>ref|XP_002265012.1| PREDICTED: ABC transporter C family member 4-like [Vitis vinifera]
          Length = 1509

 Score =  148 bits (373), Expect = 5e-34
 Identities = 75/105 (71%), Positives = 88/105 (83%), Gaps = 4/105 (3%)
 Frame = +3

Query: 3    LDDVFSAVDAHTGSELFKECVRGALKNKTILLVTHQVEFLHNTNLILVMRDGVIVQSGKY 182
            LDDVFSAVDAHTG+++FKECVRGAL+NKTILLVTHQV+FLHN +LILVMRDG+IVQSGKY
Sbjct: 791  LDDVFSAVDAHTGTDIFKECVRGALRNKTILLVTHQVDFLHNVDLILVMRDGMIVQSGKY 850

Query: 183  NDLLEPGLDFGSLAATHKTSMELVE----MNNSKHFPKPPIRQKP 305
            NDLLE G+DF +L A H+TSMELVE       S++ PK P   +P
Sbjct: 851  NDLLESGMDFKALVAAHETSMELVEEAGPAITSENSPKLPQSPQP 895


>ref|XP_002301476.1| multidrug resistance protein ABC transporter family [Populus
            trichocarpa] gi|222843202|gb|EEE80749.1| multidrug
            resistance protein ABC transporter family [Populus
            trichocarpa]
          Length = 1508

 Score =  147 bits (372), Expect = 7e-34
 Identities = 74/99 (74%), Positives = 85/99 (85%), Gaps = 3/99 (3%)
 Frame = +3

Query: 3    LDDVFSAVDAHTGSELFKECVRGALKNKTILLVTHQVEFLHNTNLILVMRDGVIVQSGKY 182
            LDDVFSAVDAHTG+++FKECVRGALK KTILLVTHQV+FLHN +LI VMRDG IVQSGKY
Sbjct: 791  LDDVFSAVDAHTGTDIFKECVRGALKGKTILLVTHQVDFLHNVDLISVMRDGQIVQSGKY 850

Query: 183  NDLLEPGLDFGSLAATHKTSMELVEMN---NSKHFPKPP 290
            NDLL  GLDFG+L A H TSMELVE +   +S++ P+PP
Sbjct: 851  NDLLVSGLDFGALVAAHDTSMELVEASSEISSENSPRPP 889


>ref|XP_002523063.1| multidrug resistance-associated protein 2, 6 (mrp2, 6),
            abc-transoprter, putative [Ricinus communis]
            gi|223537625|gb|EEF39248.1| multidrug
            resistance-associated protein 2, 6 (mrp2, 6),
            abc-transoprter, putative [Ricinus communis]
          Length = 1506

 Score =  145 bits (366), Expect = 3e-33
 Identities = 70/99 (70%), Positives = 86/99 (86%), Gaps = 3/99 (3%)
 Frame = +3

Query: 3    LDDVFSAVDAHTGSELFKECVRGALKNKTILLVTHQVEFLHNTNLILVMRDGVIVQSGKY 182
            LDDVFSAVDAHTGS++FKECVRGALK KTILLVTHQV+FLHN +LI+VMRDG+IVQSGKY
Sbjct: 789  LDDVFSAVDAHTGSDIFKECVRGALKGKTILLVTHQVDFLHNIDLIMVMRDGMIVQSGKY 848

Query: 183  NDLLEPGLDFGSLAATHKTSMELVEMNNS---KHFPKPP 290
            N+L++ G+DFG+L A H T+MELVE   +   ++ P+PP
Sbjct: 849  NNLVKSGMDFGALVAAHDTAMELVEAGTAVPGENSPRPP 887


>ref|XP_002321011.1| multidrug resistance protein ABC transporter family [Populus
            trichocarpa] gi|222861784|gb|EEE99326.1| multidrug
            resistance protein ABC transporter family [Populus
            trichocarpa]
          Length = 1507

 Score =  144 bits (364), Expect = 6e-33
 Identities = 71/99 (71%), Positives = 85/99 (85%), Gaps = 3/99 (3%)
 Frame = +3

Query: 3    LDDVFSAVDAHTGSELFKECVRGALKNKTILLVTHQVEFLHNTNLILVMRDGVIVQSGKY 182
            LDD+FSAVDAHTG+++FK+CVRGALK KTILLVTHQV+FLHN +LI VMRDG IVQSGKY
Sbjct: 790  LDDIFSAVDAHTGTDIFKQCVRGALKGKTILLVTHQVDFLHNVDLISVMRDGQIVQSGKY 849

Query: 183  NDLLEPGLDFGSLAATHKTSMELVEMN---NSKHFPKPP 290
            NDLL  GLDFG+L A H+TSMEL+E++    S++ P PP
Sbjct: 850  NDLLASGLDFGALVAAHETSMELLEVSAEIPSENSPTPP 888


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