BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010325
         (253 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002876899.1| nonsense-mediated mRNA decay NMD3 family pro...    96   4e-18
dbj|BAH57009.1| AT2G03820 [Arabidopsis thaliana]                       96   4e-18
ref|NP_178476.1| nonsense-mediated mRNA decay protein 3 [Arabido...    96   4e-18
ref|XP_002306035.1| predicted protein [Populus trichocarpa] gi|2...    92   3e-17
ref|XP_002305882.1| predicted protein [Populus trichocarpa] gi|2...    92   3e-17

>ref|XP_002876899.1| nonsense-mediated mRNA decay NMD3 family protein [Arabidopsis
           lyrata subsp. lyrata] gi|297322737|gb|EFH53158.1|
           nonsense-mediated mRNA decay NMD3 family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 516

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 44/56 (78%), Positives = 50/56 (89%)
 Frame = +1

Query: 85  LSMDEDSGMFRVPQTIGSVLCCKCGISMAPNAANMCVRCLRSEVDITEGLQKSLII 252
           +S+ ++SGMF V QTIGSVLCCKCG+ MAPNAANMCV CLRSEVDITEGLQKS+ I
Sbjct: 1   MSVMDESGMFNVQQTIGSVLCCKCGVPMAPNAANMCVNCLRSEVDITEGLQKSIQI 56


>dbj|BAH57009.1| AT2G03820 [Arabidopsis thaliana]
          Length = 392

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 44/56 (78%), Positives = 50/56 (89%)
 Frame = +1

Query: 85  LSMDEDSGMFRVPQTIGSVLCCKCGISMAPNAANMCVRCLRSEVDITEGLQKSLII 252
           +S+ ++SGMF V QTIGSVLCCKCG+ MAPNAANMCV CLRSEVDITEGLQKS+ I
Sbjct: 1   MSVMDESGMFNVQQTIGSVLCCKCGVPMAPNAANMCVNCLRSEVDITEGLQKSIQI 56


>ref|NP_178476.1| nonsense-mediated mRNA decay protein 3 [Arabidopsis thaliana]
           gi|4582430|gb|AAD24816.1| putative nonsense-mediated
           mRNA decay protein [Arabidopsis thaliana]
           gi|20466624|gb|AAM20629.1| putative nonsense-mediated
           mRNA decay protein [Arabidopsis thaliana]
           gi|22136400|gb|AAM91278.1| putative nonsense-mediated
           mRNA decay protein [Arabidopsis thaliana]
           gi|330250660|gb|AEC05754.1| nonsense-mediated mRNA decay
           protein 3 [Arabidopsis thaliana]
          Length = 516

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 44/56 (78%), Positives = 50/56 (89%)
 Frame = +1

Query: 85  LSMDEDSGMFRVPQTIGSVLCCKCGISMAPNAANMCVRCLRSEVDITEGLQKSLII 252
           +S+ ++SGMF V QTIGSVLCCKCG+ MAPNAANMCV CLRSEVDITEGLQKS+ I
Sbjct: 1   MSVMDESGMFNVQQTIGSVLCCKCGVPMAPNAANMCVNCLRSEVDITEGLQKSIQI 56


>ref|XP_002306035.1| predicted protein [Populus trichocarpa] gi|222848999|gb|EEE86546.1|
           predicted protein [Populus trichocarpa]
          Length = 511

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 42/54 (77%), Positives = 49/54 (90%)
 Frame = +1

Query: 91  MDEDSGMFRVPQTIGSVLCCKCGISMAPNAANMCVRCLRSEVDITEGLQKSLII 252
           M E++GMF V QTIGSVLCCKCGI M PNAANMCV+CLRSEVDITEGL+K++I+
Sbjct: 1   MAEEAGMFMVHQTIGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLKKNVIL 54


>ref|XP_002305882.1| predicted protein [Populus trichocarpa] gi|222848846|gb|EEE86393.1|
           predicted protein [Populus trichocarpa]
          Length = 511

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 42/54 (77%), Positives = 49/54 (90%)
 Frame = +1

Query: 91  MDEDSGMFRVPQTIGSVLCCKCGISMAPNAANMCVRCLRSEVDITEGLQKSLII 252
           M E++GMF V QTIGSVLCCKCGI M PNAANMCV+CLRSEVDITEGL+K++I+
Sbjct: 1   MAEEAGMFMVHQTIGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLKKNVIL 54