BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010282
         (416 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thalia...    81   8e-14
emb|CAD41785.1| OSJNBa0035M09.1 [Oryza sativa Japonica Group] gi...    69   3e-10
ref|XP_002440822.1| hypothetical protein SORBIDRAFT_09g007400 [S...    64   1e-08
ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6...    63   3e-08
ref|XP_003548697.1| PREDICTED: putative ribonuclease H protein A...    61   8e-08

>ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thaliana]
           gi|9294184|dbj|BAB02086.1| reverse transcriptase-like
           protein [Arabidopsis thaliana]
           gi|332643482|gb|AEE77003.1| Ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 343

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 42/129 (32%), Positives = 73/129 (56%)
 Frame = -1

Query: 395 IWKAPLPAYIQNFIWKLYMNILPMGDILAKRRMKGDFSCPYCLKEIETAEHLFFTYEWIR 216
           IWK      I++F+WKL    L  GD L +R ++    C  C +E ET++HLFF   + +
Sbjct: 18  IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77

Query: 215 TVWFSSQVRMRIHKDQKLTPRERMDLCLSWSCSTDKDQSLAGIHIAFLLQQIWKTRNELK 36
            VW +S +  +  +   +T   +M+L LS SC  ++   L  + I ++L ++WK+RN+L 
Sbjct: 78  QVWRASGIPHQELRTTGITMETKMELLLS-SCLANRQPQLFNLAI-WILWRLWKSRNQLV 135

Query: 35  FENRMANWE 9
           F+ +  +W+
Sbjct: 136 FQQKSISWQ 144


>emb|CAD41785.1| OSJNBa0035M09.1 [Oryza sativa Japonica Group]
            gi|38346911|emb|CAE03883.2| OSJNBb0015N08.11 [Oryza
            sativa Japonica Group]
          Length = 1026

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 2/131 (1%)
 Frame = -1

Query: 401  KHIWKAPLPAYIQNFIWKLYMN-ILPMGDILAKRRMKGDFSCPYCLKEIETAEHLFFTYE 225
            K IWK  +P  I+ FIW    N IL   ++L +   KGD  C +C K +ET +HLFF   
Sbjct: 842  KKIWKFRVPLKIRIFIWFFTKNKILTKDNLLKRGWRKGDNKCQFCDK-VETVQHLFFDCP 900

Query: 224  WIRTVWFSSQVRMRIHKDQKLTPRERMDLCLSWSCSTDK-DQSLAGIHIAFLLQQIWKTR 48
              R +W      + +          R DL  SW  S DK  ++L  + IA +L  IWK R
Sbjct: 901  LARLIWNIIACALNVKP-----VLSRQDLFGSWIQSMDKFTKNLVIVGIAAVLWSIWKCR 955

Query: 47   NELKFENRMAN 15
            N+  FE ++ N
Sbjct: 956  NKACFERKLPN 966


>ref|XP_002440822.1| hypothetical protein SORBIDRAFT_09g007400 [Sorghum bicolor]
            gi|241946107|gb|EES19252.1| hypothetical protein
            SORBIDRAFT_09g007400 [Sorghum bicolor]
          Length = 835

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 1/125 (0%)
 Frame = -1

Query: 395  IWKAPLPAYIQNFIWKLYMNILPMGDILAKRRMKGDFSCPYCLKEIETAEHLFFTYEWIR 216
            IWK+ +PA I+ F+W L  N++   D L KR+  GD +C +C ++ E+  HLFF     +
Sbjct: 657  IWKSKIPAKIKIFLWLLLNNVILTKDNLIKRKWIGDPTCYFCDQD-ESVSHLFFHCSTAK 715

Query: 215  TVWFSSQVRMRIHKDQKLTPRERMDLCLSW-SCSTDKDQSLAGIHIAFLLQQIWKTRNEL 39
             VW      +  H          ++ C +W  C     +    + IA +   IWKTRN+ 
Sbjct: 716  AVW-----AIVAHCIGANNIPNTLNQCWTWCECWLPAGKQFHTLGIAAICWAIWKTRNKC 770

Query: 38   KFENR 24
             FE R
Sbjct: 771  CFEGR 775


>ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6 [Medicago truncatula]
           gi|355496629|gb|AES77832.1| DNA-directed RNA polymerase
           III subunit RPC6 [Medicago truncatula]
          Length = 456

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 42/126 (33%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
 Frame = -1

Query: 401 KHIWKAPLPAYIQNFIWKLYMNILPMGDILAKRRMKGDFSCPYCLKEIETAEHLFFTYEW 222
           K IWK PLP  ++NF+WKL  NI+P    L +R +  D  CP C    E++ H F     
Sbjct: 261 KLIWKLPLPTRVRNFMWKLARNIIPTRCNLRRRGVVLDTVCPLCFDADESSNHRFMACPM 320

Query: 221 IRTVWFSSQVRMRIHKDQKLTPRERMDL---CLSWSCSTDKDQSLAGIHIAFLLQQIWKT 51
              VWF+S +  +        P  + DL    LSW       + LA       L +IW  
Sbjct: 321 TLQVWFASPLGFQ--------PPPQTDLNAWLLSW---LSAKEPLAVQLFCVCLWKIWFF 369

Query: 50  RNELKF 33
           RN++ F
Sbjct: 370 RNQVIF 375


>ref|XP_003548697.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
           max]
          Length = 600

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 3/132 (2%)
 Frame = -1

Query: 410 LTLKHIWKAPLPAYIQNFIWKLYMNILPMGDILAKRRMKGDFS-CPYCLKEIETAEHLFF 234
           L  K++W+   P    +F W+L  + LP  D L KR+++ D   CP+C  + ETA HLFF
Sbjct: 430 LGFKNLWETKAPPKALSFAWRLLWDRLPTKDNLTKRQIQVDNDLCPFCHSQPETASHLFF 489

Query: 233 TYEWIRTVWFSSQVRMRIHKDQKLTPRERMDLCLSWSCSTDKDQSLAGI--HIAFLLQQI 60
           T   I  +W+  +    + +D+    R   +    +S +  K  +   I   IA  L  I
Sbjct: 490 TCGKIMPMWW--EFLSWVKEDKVFHCRPMDNFLQHYSSAASKVSNTRRIMWWIAATL-SI 546

Query: 59  WKTRNELKFENR 24
           W+ RN++ F+N+
Sbjct: 547 WRLRNDIIFQNQ 558