BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010272
         (1594 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...   157   1e-35
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]   155   2e-35
ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ...   150   1e-33
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2...   143   1e-31
ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycin...   135   4e-29

>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score =  157 bits (396), Expect = 1e-35
 Identities = 134/432 (31%), Positives = 198/432 (45%), Gaps = 13/432 (3%)
 Frame = -1

Query: 1456 VVDWNKLPDDMLKLIVKHLA-FPDFARFGSVCSSWRSLASVGLHLHHKGGRLPWLIVPYY 1280
            + DW++L  ++L  I K    + D+ RF +VC +WR  ASV    HH   +LPWL++P  
Sbjct: 1    MADWSQLHPELLDFIAKKFKIYTDYVRFRAVCHNWR--ASVPKTPHHLPTQLPWLMLP-- 56

Query: 1279 DVVGQAPPANTRDNYCPDPVLGFFSILDGAIHKVDIPELQGRRIC-GSSFGWLITVHGNS 1103
                Q+ P +T           FFS+     H + +PE   RR   GSS GWL+ +    
Sbjct: 57   ----QSQPHHTHRP--------FFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAP 104

Query: 1102 EFQLLRPFTGKVVNLPPLTTFPHVGISEEKHNSLVYIVKDWFRVFPDMVWDTN--RMRNR 929
            E  LL P T   V+LPPL+TFP+V           Y +    R     V+  +  +MR+ 
Sbjct: 105  EIFLLNPLTRSKVHLPPLSTFPNVVRFNFADVGREYAL----RTSSGDVYTRSLKKMRDS 160

Query: 928  YIYKVITSP---NAESPIVIAIPYQHAMLLFYKPGEDNDDPFIWKKIRGGYVKGGSRQLC 758
            +I K I S    N    I + I  Q   L   +    +DD + + +    Y +       
Sbjct: 161  FIKKTILSSSPANGSDFIAVVILNQTGDLALCRK---SDDSWTFLEDAQSYAE------- 210

Query: 757  PIYSDITFYKGDLYALRCRGEVDLVKGLDGPSPTKSLFIKPNREMXXXXXXXXXXXXXXX 578
                D+ F++G  YA+   G +  V  + G SP  S+   P +                 
Sbjct: 211  ----DVIFHRGLFYAVNKYGSI-AVCDVSGSSPRVSIIEMPQQ----------FGGDLQY 255

Query: 577  LVESSTDLLQIERNYGAY--IQHKEGEYYRLTISFRVSKLDFAEHKWVEVKNLGDRALFL 404
            LVES  +LL + R       ++  +      T  F+V +LD    +W  V +LGDRALFL
Sbjct: 256  LVESGEELLLVTRYLDLTYDVEPDQTSLIYRTTRFQVCRLDLKAPRWEVVSSLGDRALFL 315

Query: 403  GPNNSLSVIASDYPGCRGNCIYFCD----DDMQMINMGHDKGVFDLGSGNIEKICTINSI 236
            G N SLS+ + D+PGC+GNCIY+ D    D+   I    D G+F+L  G+IE +   +  
Sbjct: 316  GENLSLSLSSVDFPGCKGNCIYYTDDYSEDNYDGIGGEQDLGIFNLEDGSIEPLPCSHFR 375

Query: 235  TVCPRPLWFSAN 200
               P PLW + N
Sbjct: 376  IRWPPPLWVTPN 387


>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
          Length = 389

 Score =  155 bits (393), Expect = 2e-35
 Identities = 133/432 (30%), Positives = 195/432 (45%), Gaps = 13/432 (3%)
 Frame = -1

Query: 1456 VVDWNKLPDDMLKLIVKHLA-FPDFARFGSVCSSWRSLASVGLHLHHKGGRLPWLIVPYY 1280
            + DW++L  ++L  I K    + D+ RF +VC +WR  ASV    HH   +LPWL++P  
Sbjct: 1    MADWSQLHPELLDFIAKKFKIYTDYVRFRAVCHNWR--ASVPKTPHHLPTQLPWLMLP-- 56

Query: 1279 DVVGQAPPANTRDNYCPDPVLGFFSILDGAIHKVDIPELQGRRIC-GSSFGWLITVHGNS 1103
                Q+ P +T           FFS+     H + +PE   RR   GSS GWL+ +    
Sbjct: 57   ----QSQPHHTHRP--------FFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAP 104

Query: 1102 EFQLLRPFTGKVVNLPPLTTFPHVGISEEKHNSLVYIVKDWFRVFPDMVWDTN--RMRNR 929
            E  LL P T   V+LPPL+TFP+V           Y +    R     V+  +  +MR+ 
Sbjct: 105  EIFLLNPLTRSKVHLPPLSTFPNVVRFNFADVGREYAL----RTSSGDVYTRSLKKMRDS 160

Query: 928  YIYKVITSP---NAESPIVIAIPYQHAMLLFYKPGEDNDDPFIWKKIRGGYVKGGSRQLC 758
            +I K I S    N    I + I  Q   L   +  +D+     W  +             
Sbjct: 161  FIKKTILSSSPANGSDFIAVVILNQTGDLALCRKSDDS-----WTFLEDAQSYS------ 209

Query: 757  PIYSDITFYKGDLYALRCRGEVDLVKGLDGPSPTKSLFIKPNREMXXXXXXXXXXXXXXX 578
                D+ F++G  YA+   G +  V  + G SP  S+   P +                 
Sbjct: 210  ---EDVIFHRGLFYAVNKYGSI-AVCDVSGSSPRVSIIEMPQQ----------FGGDLQY 255

Query: 577  LVESSTDLLQIERNYGAY--IQHKEGEYYRLTISFRVSKLDFAEHKWVEVKNLGDRALFL 404
            LVES  +LL + R       ++  +      T  F+V +LD    +W  V +LGDRALFL
Sbjct: 256  LVESGEELLLVTRYLDLTYDVEXDQTSLIYRTTRFQVCRLDSKAPRWEVVSSLGDRALFL 315

Query: 403  GPNNSLSVIASDYPGCRGNCIYFCD----DDMQMINMGHDKGVFDLGSGNIEKICTINSI 236
            G N SLS+ + D+PGC+GNCIY+ D    D+   I    D G+F+L  G+IE +   +  
Sbjct: 316  GENLSLSLSSVDFPGCKGNCIYYTDDYSEDNYDGIGGEQDLGIFNLEDGSIEPLPCSHFR 375

Query: 235  TVCPRPLWFSAN 200
               P PLW + N
Sbjct: 376  IRWPPPLWVTPN 387


>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
            gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
            putative [Ricinus communis]
          Length = 398

 Score =  150 bits (378), Expect = 1e-33
 Identities = 128/441 (29%), Positives = 208/441 (47%), Gaps = 21/441 (4%)
 Frame = -1

Query: 1459 VVVDWNKLPDDMLKLIVKHLA-FPDFARFGSVCSSWRSLASVGLHLHHKGGRLPWLIVPY 1283
            +++DW++LP +++++I K L  + D+    +VC +WR   S+    +H   +LPWL++P 
Sbjct: 1    MIMDWSQLPPELIEIISKGLTIYSDYLYSRAVCHAWRF--SIPKTPNHLPPQLPWLMLPQ 58

Query: 1282 YDVVGQAPPANTRDNYCPDPVLGFFSILDGAIHKVDIPELQGR-RICGSSFGWLITVHGN 1106
                 Q+    +R          FFS+     H +++PE+  R R CGSS GWL+ +   
Sbjct: 59   ----SQSQSNQSRR--------AFFSLSTNKFHFLNLPEVSYRKRHCGSSHGWLMILDDT 106

Query: 1105 SEFQLLRPFTGKVVNLPPLTTFPHVGISEEKHNSLVYIVKDWFRVFPDMVWDTNRMRNRY 926
                L+ P T   ++LPPL++FP+V           Y +++       +     +MR+ +
Sbjct: 107  PTILLINPLTRAKLSLPPLSSFPNVISFNYSDIGREYALRNLLG--ERVTVSLRQMRDSF 164

Query: 925  IYKVITSPNA---ESPIVIAIPYQHAMLLFYKPGEDNDDPFIWKKIRGGYVKGGSRQLCP 755
            I KV+ S +     + +VIAI  Q   L + + G+ +     W  +        +R  C 
Sbjct: 165  IRKVVLSSSPLKDNNFVVIAILNQTDDLAYCRNGDKS-----WSLVEN------ARSFC- 212

Query: 754  IYSDITFYKGDLYALRCRGEVDLVKGLDGPSPTKSLFIKPNREMXXXXXXXXXXXXXXXL 575
               D+ F  G  YA+   G++ ++  +   SP  S    P +                 L
Sbjct: 213  --EDVIFVNGMFYAVNKAGQI-VICDISSDSPRVSFMETPRQA----------GGDMQYL 259

Query: 574  VESSTDLLQIERNYGAYIQ--HKEGEYYRL--TISFRVSKLDFAEHKWVEVKNLGDRALF 407
            V S  +LL + R      +  H + E + +  TI F V +LD+   +W+ +  LGD+ALF
Sbjct: 260  VNSGDELLLVTRYLDLEYEFDHPDMEPHLIYRTIRFEVFRLDWNGPQWLRMSTLGDKALF 319

Query: 406  LGPNNSLSVIASDYPGCRGNCIYFCDDDMQMINMGHDKGVFDLGSGNIEKIC--TINSIT 233
            +G N+SLS+ A+D+ GC GNCIY+ DD +     GH  G  DLG   I K+C  TI  + 
Sbjct: 320  IGENSSLSLSATDFSGCMGNCIYYTDDYLDANYDGH-FGDHDLG---IFKLCDETIEPLP 375

Query: 232  VCPR----------PLWFSAN 200
              PR          PLW S N
Sbjct: 376  CYPRNFTSPLQWSPPLWVSPN 396


>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
            predicted protein [Populus trichocarpa]
          Length = 393

 Score =  143 bits (361), Expect = 1e-31
 Identities = 125/438 (28%), Positives = 208/438 (47%), Gaps = 18/438 (4%)
 Frame = -1

Query: 1459 VVVDWNKLPDDMLKLIVKHLA-FPDFARFGSVCSSWRSLASVGLHLHHKGGRLPWLIVPY 1283
            + VDW +LP +++++I K +  + D+  F +VC +W+S  S+    +H   +LPWL++P 
Sbjct: 1    MAVDWTQLPPELIEIISKKITIYSDYLHFQAVCHAWKS--SIPKTPNHLPPQLPWLLLPQ 58

Query: 1282 YDVVGQAPPANTRDNYCPDPVLGFFSILDGAIHKVDIPELQGRRI-CGSSFGWLITVHGN 1106
                 Q+  ++ R          FF++     H +++PE   R+  CGSS GWLI +  +
Sbjct: 59   ----SQSNQSSYR---------AFFNLSTYKFHSLNLPEASHRKKHCGSSHGWLIILDDS 105

Query: 1105 SEFQLLRPFTGKVVNLPPLTTFPHVGISEEKHNSLVYIVKDWFRVFPDMVWDT---NRMR 935
                ++ P T + ++LP +++FP+V +S +  N    + +++  V P    +T    +MR
Sbjct: 106  PSILVINPLTRRKIHLPAISSFPNV-VSFDYAN----VGREYLLVNPQGERNTASLRQMR 160

Query: 934  NRYIYKVITSPN-----AESPIVIAIPYQHAMLLFYKPGEDNDDPFIWKKIRGGYVKGGS 770
            + +I KV+ S +      +  + +AI      L + K G++      W  +        S
Sbjct: 161  DGFIKKVVMSSSPLEKKGDFFVAMAILCSTGDLAYCKNGDE-----CWNIVEN------S 209

Query: 769  RQLCPIYSDITFYKGDLYALRCRGEVDLVKGLDGPSPTKSLFIKPNREMXXXXXXXXXXX 590
            R       D+ ++ G  YA+   G++ +V  ++G SP  S FI+  R++           
Sbjct: 210  RSFS---EDVIYFNGLFYAVNKAGQI-VVCDVNGNSPKVS-FIETPRQIGGDMQYL---- 260

Query: 589  XXXXLVESSTDLLQIERNYGAYIQHKEGEYYRLTISFRVSKLDFAEHKWVEVKNLGDRAL 410
                 V S   LL + R     ++     Y   T  F V KLD    +W  V +LGD  L
Sbjct: 261  -----VSSGDGLLLVTRYLDLDVEFDIFIYK--TARFEVFKLDLNGPRWERVTSLGDMML 313

Query: 409  FLGPNNSLSVIASDYPGCRGNCIYFCDDDMQMINMG----HDKGVFDLGSGNIEKI-C-- 251
            F+G N+SL++ AS   GC G+CIY+ DD       G    HD G+F L  G+IE + C  
Sbjct: 314  FIGENSSLALSASGLSGCMGDCIYYTDDYSANNYDGHIGEHDLGIFKLSDGSIEPLPCYP 373

Query: 250  -TINSITVCPRPLWFSAN 200
                S    P PLW S N
Sbjct: 374  RNSYSRLQWPPPLWISPN 391


>ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycine max]
          Length = 393

 Score =  135 bits (339), Expect = 4e-29
 Identities = 118/433 (27%), Positives = 183/433 (42%), Gaps = 15/433 (3%)
 Frame = -1

Query: 1453 VDWNKLPDDMLKLIVKHLA-FPDFARFGSVCSSWRS-LASVGLHLHHKGGRLPWLIVPYY 1280
            V+W +LP ++L+ I K L  + D+ RF SVC SWRS +  + LHL  +   LPWL++   
Sbjct: 3    VEWGELPPELLESISKTLTIYVDYLRFRSVCRSWRSSVPKIPLHLPPQ---LPWLMLSRR 59

Query: 1279 DVVGQAPPANTRDNYCPDPVLGFFSILDGAIHKVDIPELQGRRICGSSFGWLITVHGNSE 1100
                                  FF +     H ++       RICGSS GWL+ +    +
Sbjct: 60   ---------------------AFFDLSLNKTHLLNPQPSHRTRICGSSHGWLVMLDETPQ 98

Query: 1099 FQLLRPFTGKVVNLPPLTTFPHVGISEEKHNSLVYIVKDWFRVFPDMVWDTNRMRNRYIY 920
             +LL P T     LPPL  FP+V   +  +    Y++++ +       ++  +M N ++ 
Sbjct: 99   IRLLNPLTRATRPLPPLHAFPNVVAFDHANVGREYLIQNPYGGL--YAFNLRQMCNSFLG 156

Query: 919  KVI--TSPNAESPIVIAIPYQHAMLLFYKPGEDNDDPFIWKKIRGGYVKGGSRQLCPIYS 746
            KV+   SP                L F + G D+     W  + G        +    + 
Sbjct: 157  KVVLSASPTLNDDFAALAIVGQNNLAFCRNGYDS-----WIFLNG------EEEEMNCWE 205

Query: 745  DITFYKGDLYALRCRGEVDLVKGLDGPSPTKSLFIKPNREMXXXXXXXXXXXXXXXLVES 566
            D+  Y G  +A+   G + +    +G  P +   I+                     V S
Sbjct: 206  DVVNYNGLFFAVSKGGTIAVCDAGEGCFPPRVSIIQTTTPFGFAGDIHYA-------VFS 258

Query: 565  STDLLQIERNYGAYIQHKEGEYYRL---TISFRVSKLDFAEHKWVEVKNLGDRALFLGPN 395
            + D+L + R          GE   L   T+ F V K+++    W  V+ LG+R LF+G N
Sbjct: 259  AGDMLLLIRVLDQDFSDHAGEESDLVYRTVGFEVFKMNWGLLTWQRVETLGERVLFVGGN 318

Query: 394  NSLSVIASDYPGCRGNCIYFCDDDMQMINMG----HDKGVFDLGSGNIEKICTINSITVC 227
            +SLS  ASD+ GC  +CIYF DD  +  +      HD GVF L   +IE +   N  +  
Sbjct: 319  SSLSFCASDFVGCSADCIYFTDDYSESNDDDACGKHDLGVFRLRDKSIEPLPCFNQNSCS 378

Query: 226  ----PRPLWFSAN 200
                P P+W S N
Sbjct: 379  RLRWPLPIWVSPN 391