BLASTX nr result

ID: Coptis25_contig00010238 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010238
         (298 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283026.1| PREDICTED: reticulon-like protein B8 isoform...   101   7e-20
ref|NP_001241930.1| uncharacterized protein LOC100787981 [Glycin...   100   1e-19
ref|XP_003519525.1| PREDICTED: uncharacterized protein LOC100500...   100   2e-19
ref|XP_004161550.1| PREDICTED: reticulon-like protein B8-like [C...    98   8e-19
ref|XP_004151714.1| PREDICTED: reticulon-like protein B8-like [C...    98   8e-19

>ref|XP_002283026.1| PREDICTED: reticulon-like protein B8 isoform 3 [Vitis vinifera]
           gi|225446771|ref|XP_002283019.1| PREDICTED:
           reticulon-like protein B8 isoform 2 [Vitis vinifera]
           gi|225446773|ref|XP_002283015.1| PREDICTED:
           reticulon-like protein B8 isoform 1 [Vitis vinifera]
           gi|302143506|emb|CBI22067.3| unnamed protein product
           [Vitis vinifera]
          Length = 248

 Score =  101 bits (251), Expect = 7e-20
 Identities = 46/62 (74%), Positives = 53/62 (85%)
 Frame = +3

Query: 3   LTVLYIGFIGAHTLPVLYERYEDQIDSFVYKILDQLQHQYGKIDSKVLSRIPRGSFKGKK 182
           LTVLY+GFI AHTLPVLYERYEDQ+D FVY++L QLQH Y K+DS  LS+IP+GS KGKK
Sbjct: 187 LTVLYVGFIAAHTLPVLYERYEDQVDGFVYQVLGQLQHNYRKLDSGFLSKIPKGSLKGKK 246

Query: 183 FE 188
            E
Sbjct: 247 HE 248


>ref|NP_001241930.1| uncharacterized protein LOC100787981 [Glycine max]
           gi|255638847|gb|ACU19727.1| unknown [Glycine max]
          Length = 245

 Score =  100 bits (249), Expect = 1e-19
 Identities = 43/62 (69%), Positives = 55/62 (88%)
 Frame = +3

Query: 3   LTVLYIGFIGAHTLPVLYERYEDQIDSFVYKILDQLQHQYGKIDSKVLSRIPRGSFKGKK 182
           LTV+YIGF+ AHTLPVLYERYEDQ+D+FVYK+ DQLQ+ Y K+D+ +LS+IP+G  KGKK
Sbjct: 184 LTVMYIGFVAAHTLPVLYERYEDQVDNFVYKVFDQLQNHYQKLDTGLLSKIPKGKLKGKK 243

Query: 183 FE 188
           +E
Sbjct: 244 YE 245


>ref|XP_003519525.1| PREDICTED: uncharacterized protein LOC100500122 [Glycine max]
          Length = 245

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 42/62 (67%), Positives = 55/62 (88%)
 Frame = +3

Query: 3   LTVLYIGFIGAHTLPVLYERYEDQIDSFVYKILDQLQHQYGKIDSKVLSRIPRGSFKGKK 182
           LTV+YIGF+ AHTLPVLYERYEDQ+D+FVYK+ DQ+Q+ Y K+D+ +LS+IP+G  KGKK
Sbjct: 184 LTVMYIGFVAAHTLPVLYERYEDQVDNFVYKVFDQMQNHYQKLDTGLLSKIPKGKLKGKK 243

Query: 183 FE 188
           +E
Sbjct: 244 YE 245


>ref|XP_004161550.1| PREDICTED: reticulon-like protein B8-like [Cucumis sativus]
          Length = 249

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 42/62 (67%), Positives = 53/62 (85%)
 Frame = +3

Query: 3   LTVLYIGFIGAHTLPVLYERYEDQIDSFVYKILDQLQHQYGKIDSKVLSRIPRGSFKGKK 182
           +TVLYIGF+ AHTLP+LYE+YED++D+F YK+ DQL   Y K DS VLS+IPRG+FKGKK
Sbjct: 188 VTVLYIGFVAAHTLPILYEKYEDEVDTFAYKVFDQLCGHYQKFDSSVLSKIPRGAFKGKK 247

Query: 183 FE 188
           +E
Sbjct: 248 YE 249


>ref|XP_004151714.1| PREDICTED: reticulon-like protein B8-like [Cucumis sativus]
          Length = 83

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 42/62 (67%), Positives = 53/62 (85%)
 Frame = +3

Query: 3   LTVLYIGFIGAHTLPVLYERYEDQIDSFVYKILDQLQHQYGKIDSKVLSRIPRGSFKGKK 182
           +TVLYIGF+ AHTLP+LYE+YED++D+F YK+ DQL   Y K DS VLS+IPRG+FKGKK
Sbjct: 22  VTVLYIGFVAAHTLPILYEKYEDEVDTFAYKVFDQLCGHYQKFDSSVLSKIPRGAFKGKK 81

Query: 183 FE 188
           +E
Sbjct: 82  YE 83


Top