BLASTX nr result
ID: Coptis25_contig00010210
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00010210
(1085 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thalia... 88 4e-15
ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis ... 79 2e-12
gb|EEC83100.1| hypothetical protein OsI_28249 [Oryza sativa Indi... 79 2e-12
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 79 2e-12
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga... 78 3e-12
>ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thaliana]
gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
thaliana] gi|7269807|emb|CAB79667.1| putative protein
[Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
putative reverse transcriptase/RNA-dependent DNA
polymerase [Arabidopsis thaliana]
gi|332660185|gb|AEE85585.1| Ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 575
Score = 87.8 bits (216), Expect = 4e-15
Identities = 86/346 (24%), Positives = 135/346 (39%), Gaps = 12/346 (3%)
Frame = -1
Query: 1028 LNVNSLFSPALPTWNQNRLG*LFPFQIIQSINRVHIRPLNLPDQII*PYAKNGNISVNLA 849
L V+ L + W ++ + LFP + I + + D Y +G+ +V
Sbjct: 169 LKVSDLIDESGREWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSG 228
Query: 848 YFFLSKQDNLSFSS------SFNPLIVQKLWKLKIDAATQLFIWKLYSGGLPTGDVLHKC 687
Y+ L++ N S S NP I QK+WK + Q F+WK S LP L
Sbjct: 229 YWVLTQIINKRSSPQEVSEPSLNP-IYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYR 287
Query: 686 KFKGDITCSFCQKCIETALHALFSYYWVKLMWNVSNAMLNISSHDDWEVND*LNLLISWC 507
+ C C C ET H LF + +L W +S+ + + +W + +NL W
Sbjct: 288 HLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGG--EWADSIYVNLY--WV 343
Query: 506 F---DKDEDISRRGYFCIQFLYELWLTRNNARMEQKPINTKLILNLSA--LKRNRNHSAF 342
F + + + L+ LW RN + N + +L + L+ R +
Sbjct: 344 FNLGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEA 403
Query: 341 LTCPPFGNIALASQPLCFNFNTWSSPSVPWVKVNFDTALDKSHYSGAAGAIARDSEGVIF 162
+C G ++ C W P WVK N D ++ + G + R+ +G +
Sbjct: 404 ESC---GTKPQVNRSSC---GRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVK 457
Query: 161 GAAFRNF-FANDHEQAKAIGAEVAVLLALRLQLNIVIFEGDCQTLI 27
R +A+ AVL R Q N VIFE D Q LI
Sbjct: 458 WMGARALPKLKSVLEAELEAMRWAVLSLSRFQYNYVIFESDSQVLI 503
>ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|6682231|gb|AAF23283.1|AC016661_8 putative non-LTR
reverse transcriptase [Arabidopsis thaliana]
gi|332641254|gb|AEE74775.1| RNase H domain-containing
protein [Arabidopsis thaliana]
Length = 484
Score = 79.0 bits (193), Expect = 2e-12
Identities = 80/322 (24%), Positives = 137/322 (42%), Gaps = 17/322 (5%)
Frame = -1
Query: 938 INRVHIRPLNLPDQII*PYAKNGNISVNLAYFFLSKQDNLSFSSSFNPL----IVQKLWK 771
I+R+++ PD+II Y G +V Y+ L+ + + + P + ++W
Sbjct: 105 IHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWN 164
Query: 770 LKIDAATQLFIWKLYSGGLPTGDVLHKCKFKGDITCSFCQKCIETALHALFSYYWVKLMW 591
L I + F+W+ S L T + L + D +C C + E+ HALF+ + + W
Sbjct: 165 LPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAW 224
Query: 590 NVSNAML--NISSHDDWEVND*LNLLISWCFDKDEDISR-RGYFCIQFLYELWLTRNNA- 423
+S++ L N +D+E N ++ +++ F +D +S + ++ +W RNN
Sbjct: 225 RLSDSSLIRNQLMSNDFEEN--ISNILN--FVQDTTMSDFHKLLPVWLIWRIWKARNNVV 280
Query: 422 --RMEQKPINTKLILNLSALKRNRNHSAFLTCPPFGNIALASQPLCFNFNTWSSPSVPWV 249
+ + P +K +L+ A H ++ + N W +P +V
Sbjct: 281 FNKFRESP--SKTVLSAKA----ETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYV 334
Query: 248 KVNFDTALDKSHYSGAAGAIARDSEG--VIFGAAFRNFFANDHEQAKAIGAEVAVLLALR 75
K NFD D G I R+ G + +G+ +N E AE LLA
Sbjct: 335 KCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLE------AETKALLAAL 388
Query: 74 LQLNI-----VIFEGDCQTLIS 24
Q I V EGDCQTLI+
Sbjct: 389 QQTWIRGYTQVFMEGDCQTLIN 410
>gb|EEC83100.1| hypothetical protein OsI_28249 [Oryza sativa Indica Group]
Length = 1300
Score = 79.0 bits (193), Expect = 2e-12
Identities = 83/344 (24%), Positives = 139/344 (40%), Gaps = 23/344 (6%)
Frame = -1
Query: 989 WNQNRLG*LFPFQIIQSINRVHIRPLNLPDQII*PYAKNGNISVNLAYFFLSKQDNLSFS 810
W+ +++ +F ++ I +H + D + K G SV AY N+ S
Sbjct: 892 WDSHKIQQIFLPIDVEKILSIHTSRFHENDFVAWHSDKLGRFSVRSAYHLALSLSNVVAS 951
Query: 809 SSFNPLIVQK----LWKLKIDAATQLFIWKLYSGGLPTGDVLHKCKFKGDITCSFCQKCI 642
SS + + K LW + ++FIW+ S L T K + + CS C
Sbjct: 952 SSSSGQELSKAWNQLWSCHVPQKVRIFIWRAASNSLATMVNKKKKRLEHCSMCSICGTEE 1011
Query: 641 ETALHALFSYYWVKLMWNVSN--AMLNISSHDDWEVND*LNLLISWCFDKDEDISRRGY- 471
E HAL K +W V + + + +W D W FD E IS+
Sbjct: 1012 EDVAHALCRCPHAKYLWEVMRRAKAITVQADRNWTGAD-------WIFDISERISKEERP 1064
Query: 470 FCIQFLYELWLTRNN---------ARMEQKPINTKLILNLSALKRNRNHSA-----FLTC 333
+ L+ +W RN A + Q+ I++ I +L +++ + + + C
Sbjct: 1065 TLLMMLWRIWYVRNEITHGKAAVPAEVSQRFISS-YITSLLEIRQFPDANLCKGKHVIRC 1123
Query: 332 PPFGNIALASQPLCFNFNT-WSSPSVPWVKVNFDTALDKSHYSGAAGAIARDSEG-VIFG 159
G A + P + W P W+K+N D + D SG GA+ R+SEG +IF
Sbjct: 1124 AAAG--AQVNHPRVNSVPVRWVRPQAGWMKLNVDGSYDPRDGSGGIGAVLRNSEGKLIFA 1181
Query: 158 AAFRNFFANDHEQAKAIGAEVAVLLALRLQLNIVIFEGDCQTLI 27
A +A+ + + ++LAL+ +I E DC L+
Sbjct: 1182 ACGSMCRPVSALEAELVACKEGIILALQWTFLPIIVETDCLELV 1225
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 79.0 bits (193), Expect = 2e-12
Identities = 80/322 (24%), Positives = 137/322 (42%), Gaps = 17/322 (5%)
Frame = -1
Query: 938 INRVHIRPLNLPDQII*PYAKNGNISVNLAYFFLSKQDNLSFSSSFNPL----IVQKLWK 771
I+R+++ PD+II Y G +V Y+ L+ + + + P + ++W
Sbjct: 1371 IHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWN 1430
Query: 770 LKIDAATQLFIWKLYSGGLPTGDVLHKCKFKGDITCSFCQKCIETALHALFSYYWVKLMW 591
L I + F+W+ S L T + L + D +C C + E+ HALF+ + + W
Sbjct: 1431 LPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAW 1490
Query: 590 NVSNAML--NISSHDDWEVND*LNLLISWCFDKDEDISR-RGYFCIQFLYELWLTRNNA- 423
+S++ L N +D+E N ++ +++ F +D +S + ++ +W RNN
Sbjct: 1491 RLSDSSLIRNQLMSNDFEEN--ISNILN--FVQDTTMSDFHKLLPVWLIWRIWKARNNVV 1546
Query: 422 --RMEQKPINTKLILNLSALKRNRNHSAFLTCPPFGNIALASQPLCFNFNTWSSPSVPWV 249
+ + P +K +L+ A H ++ + N W +P +V
Sbjct: 1547 FNKFRESP--SKTVLSAKA----ETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYV 1600
Query: 248 KVNFDTALDKSHYSGAAGAIARDSEG--VIFGAAFRNFFANDHEQAKAIGAEVAVLLALR 75
K NFD D G I R+ G + +G+ +N E AE LLA
Sbjct: 1601 KCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLE------AETKALLAAL 1654
Query: 74 LQLNI-----VIFEGDCQTLIS 24
Q I V EGDCQTLI+
Sbjct: 1655 QQTWIRGYTQVFMEGDCQTLIN 1676
>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1369
Score = 78.2 bits (191), Expect = 3e-12
Identities = 78/324 (24%), Positives = 124/324 (38%), Gaps = 4/324 (1%)
Frame = -1
Query: 989 WNQNRLG*LFPFQIIQSINRVHIRPLNLPDQII*PYAKNGNISVNLAYFFLSKQDNL--- 819
WN L LF +I R+ + PDQ + +KNG +V AY+ +D
Sbjct: 981 WNVELLNTLFQPWESTAIQRIPVALQKKPDQWMWMMSKNGQFTVRSAYYHELLEDRKTGP 1040
Query: 818 SFSSSFNPLIVQKLWKLKIDAATQLFIWKLYSGGLPTGDVLHKCKFKGDITCSFCQKCIE 639
S S N + QK+WK KI +LF WK GL + K D C C + E
Sbjct: 1041 STSRGPNLKLWQKIWKAKIPPKVKLFSWKAIHNGLAVYTNMRKRGMNIDGACPRCGEKEE 1100
Query: 638 TALHALFSYYWVKLMWNVSNAMLNISSHDDWEVND*LNLLISWCFDKDEDISRRGYFCIQ 459
T H ++ W +S ++ + + + + D +D F +
Sbjct: 1101 TTEHLIWGCDESSRAWYISPLRIHTGNIEAGS----FRIWVESLLDTHKDTEWWALFWM- 1155
Query: 458 FLYELWLTRNNARMEQKPINTKLILNLSALKRNRNHSAFLTCPPFGNIALASQPLCFNFN 279
+ +WL RN E+K + + ++ + P + L + N
Sbjct: 1156 ICWNIWLGRNKWVFEKKKLAFQEVVERAVRGVMEFEEECAHTSPV-------ETLNTHEN 1208
Query: 278 TWSSPSVPWVKVNFDTALDKSHYSGAAGAIARDSEG-VIFGAAFRNFFANDHEQAKAIGA 102
WS P V VK+N D A+ K H G + RD+EG V+ + D A+A
Sbjct: 1209 GWSVPPVGMVKLNVDAAVFK-HVGIGMGGVVRDAEGDVLLATCCGGWAMEDPAMAEACSL 1267
Query: 101 EVAVLLALRLQLNIVIFEGDCQTL 30
+ +A ++ E DC+ L
Sbjct: 1268 RYGLKVAYEAGFRNLVVEMDCKKL 1291