BLASTX nr result

ID: Coptis25_contig00010189 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010189
         (363 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN74785.1| hypothetical protein VITISV_011516 [Vitis vinifera]   172   3e-41
ref|XP_002279863.2| PREDICTED: putative E3 ubiquitin-protein lig...   166   2e-39
emb|CBI19874.3| unnamed protein product [Vitis vinifera]              166   2e-39
ref|XP_003536276.1| PREDICTED: uncharacterized protein LOC100776...   160   1e-37
ref|XP_003591660.1| U-box domain-containing protein [Medicago tr...   159   3e-37

>emb|CAN74785.1| hypothetical protein VITISV_011516 [Vitis vinifera]
          Length = 1494

 Score =  172 bits (436), Expect = 3e-41
 Identities = 83/120 (69%), Positives = 97/120 (80%)
 Frame = +2

Query: 2    SQGTGVKIYNWTGVPKHINFNKSVKCLTIMDKKLYCGCTGYTIQEVDLIKGTSTTFFSGT 181
            SQGTGV +Y+W+GVPKHINFNK VKCL + + +LYCGCTGY+IQEVDL K TS TF+SG 
Sbjct: 1314 SQGTGVNVYSWSGVPKHINFNKYVKCLDMAEDRLYCGCTGYSIQEVDLCKSTSNTFYSGA 1373

Query: 182  KKLLGKQIIHSLCIRDGFLFAGGSSLDGIAGKVFSLSTGAAIRSLPTGFDINCIAVNNYF 361
            +KLLGKQ I+SL I DGFL+AGGSS+DG AGKVFSLST A   S  TG DI  +AVN+ F
Sbjct: 1374 RKLLGKQTIYSLRIHDGFLYAGGSSVDGTAGKVFSLSTKALTGSFLTGLDIQRLAVNSDF 1433


>ref|XP_002279863.2| PREDICTED: putative E3 ubiquitin-protein ligase LIN-1-like [Vitis
            vinifera]
          Length = 1494

 Score =  166 bits (420), Expect = 2e-39
 Identities = 80/120 (66%), Positives = 96/120 (80%)
 Frame = +2

Query: 2    SQGTGVKIYNWTGVPKHINFNKSVKCLTIMDKKLYCGCTGYTIQEVDLIKGTSTTFFSGT 181
            SQGTGV +Y+W+GVPKHINFNK+VK L + + +LYCGCTGY+IQEVDL K T+ TF+SG 
Sbjct: 1314 SQGTGVNVYSWSGVPKHINFNKNVKSLDMAEDRLYCGCTGYSIQEVDLCKSTTNTFYSGA 1373

Query: 182  KKLLGKQIIHSLCIRDGFLFAGGSSLDGIAGKVFSLSTGAAIRSLPTGFDINCIAVNNYF 361
            +KLLGKQ I+SL I DG L+AGGSS+DG AGKVFSLST A   S  TG DI  +AVN+ F
Sbjct: 1374 RKLLGKQTIYSLRIHDGLLYAGGSSVDGTAGKVFSLSTKALTGSFLTGLDIQRLAVNSDF 1433


>emb|CBI19874.3| unnamed protein product [Vitis vinifera]
          Length = 1510

 Score =  166 bits (420), Expect = 2e-39
 Identities = 80/120 (66%), Positives = 96/120 (80%)
 Frame = +2

Query: 2    SQGTGVKIYNWTGVPKHINFNKSVKCLTIMDKKLYCGCTGYTIQEVDLIKGTSTTFFSGT 181
            SQGTGV +Y+W+GVPKHINFNK+VK L + + +LYCGCTGY+IQEVDL K T+ TF+SG 
Sbjct: 1330 SQGTGVNVYSWSGVPKHINFNKNVKSLDMAEDRLYCGCTGYSIQEVDLCKSTTNTFYSGA 1389

Query: 182  KKLLGKQIIHSLCIRDGFLFAGGSSLDGIAGKVFSLSTGAAIRSLPTGFDINCIAVNNYF 361
            +KLLGKQ I+SL I DG L+AGGSS+DG AGKVFSLST A   S  TG DI  +AVN+ F
Sbjct: 1390 RKLLGKQTIYSLRIHDGLLYAGGSSVDGTAGKVFSLSTKALTGSFLTGLDIQRLAVNSDF 1449


>ref|XP_003536276.1| PREDICTED: uncharacterized protein LOC100776142 [Glycine max]
          Length = 1481

 Score =  160 bits (405), Expect = 1e-37
 Identities = 79/120 (65%), Positives = 94/120 (78%)
 Frame = +2

Query: 2    SQGTGVKIYNWTGVPKHINFNKSVKCLTIMDKKLYCGCTGYTIQEVDLIKGTSTTFFSGT 181
            SQG+GVK++NW+  PK INFNK VKCL     KLYCGC+GY+IQEVDL K TS +FFSGT
Sbjct: 1302 SQGSGVKVFNWSEAPKLINFNKYVKCLAGAGDKLYCGCSGYSIQEVDLSKNTSNSFFSGT 1361

Query: 182  KKLLGKQIIHSLCIRDGFLFAGGSSLDGIAGKVFSLSTGAAIRSLPTGFDINCIAVNNYF 361
            +KLLGKQ IHSL I DGFLFA GSS+D  AGK+FSLS+   + SL TG DI+ IA+N+ F
Sbjct: 1362 RKLLGKQTIHSLRIHDGFLFACGSSVDANAGKIFSLSSKMVVGSLSTGLDIHRIAINSDF 1421


>ref|XP_003591660.1| U-box domain-containing protein [Medicago truncatula]
            gi|358346073|ref|XP_003637097.1| U-box domain-containing
            protein [Medicago truncatula] gi|355480708|gb|AES61911.1|
            U-box domain-containing protein [Medicago truncatula]
            gi|355503032|gb|AES84235.1| U-box domain-containing
            protein [Medicago truncatula]
          Length = 1490

 Score =  159 bits (401), Expect = 3e-37
 Identities = 75/120 (62%), Positives = 93/120 (77%)
 Frame = +2

Query: 2    SQGTGVKIYNWTGVPKHINFNKSVKCLTIMDKKLYCGCTGYTIQEVDLIKGTSTTFFSGT 181
            +QGTGVK++NW   PK INFNK VKCL +   KLYCGC+GY+IQEVDL K TST+FF+GT
Sbjct: 1311 TQGTGVKVFNWLDAPKFINFNKYVKCLAVSGDKLYCGCSGYSIQEVDLSKYTSTSFFTGT 1370

Query: 182  KKLLGKQIIHSLCIRDGFLFAGGSSLDGIAGKVFSLSTGAAIRSLPTGFDINCIAVNNYF 361
            +KLLGKQ IHSL I D  LFA GSS+D  AGK+FSLS+   + SL TG D++ +A+N+ F
Sbjct: 1371 RKLLGKQTIHSLQIHDDLLFACGSSIDATAGKIFSLSSKMVVGSLSTGLDVHRVAINSDF 1430


Top