BLASTX nr result
ID: Coptis25_contig00010147
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00010147
(1680 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276985.1| PREDICTED: DDB1- and CUL4-associated factor ... 189 e-109
ref|XP_003519367.1| PREDICTED: DDB1- and CUL4-associated factor ... 200 e-108
ref|XP_003544166.1| PREDICTED: LOW QUALITY PROTEIN: DDB1- and CU... 200 e-106
gb|EEC70270.1| hypothetical protein OsI_01086 [Oryza sativa Indi... 189 e-102
gb|EEE54204.1| hypothetical protein OsJ_01046 [Oryza sativa Japo... 187 e-102
>ref|XP_002276985.1| PREDICTED: DDB1- and CUL4-associated factor 13 [Vitis vinifera]
gi|302143337|emb|CBI21898.3| unnamed protein product
[Vitis vinifera]
Length = 452
Score = 189 bits (479), Expect(3) = e-109
Identities = 86/118 (72%), Positives = 101/118 (85%)
Frame = +1
Query: 280 VDHQWDGEQFATAGAQVDIWNHNRSEPVSSFHWGNDTVTSVRFNPGQPNLLLTSSRDRSI 459
VDHQWDG FATAGAQVDIW+HNRS+PV++F WGND+V +VRFNPG+P++L S+ DRS+
Sbjct: 169 VDHQWDGNLFATAGAQVDIWDHNRSQPVNTFQWGNDSVIAVRFNPGEPDILAASASDRSL 228
Query: 460 TLCDLRSSSSLGKLVMKTKTNSIC*NPMEPMNFTAANEDSNCYTYDARKLDMAKCVHE 633
L DLR SS KL+M+TKTNSI NPMEPMNFTAANED NCY+YDARKLD AKCVH+
Sbjct: 229 ILYDLRMSSPARKLIMRTKTNSISWNPMEPMNFTAANEDCNCYSYDARKLDEAKCVHK 286
Score = 161 bits (407), Expect(3) = e-109
Identities = 74/87 (85%), Positives = 80/87 (91%)
Frame = +3
Query: 3 HLDAVS*MAKNPKYLKGIFSGSMDGDIRLWDMASRRTVCQFPGHQGAVRGLTVSTDGRLL 182
H+D++S MAKNP YLKGIFSGSMDGDIRLWD+ASRRTVCQFPGHQGAVRGLT STDGR+L
Sbjct: 65 HIDSISCMAKNPNYLKGIFSGSMDGDIRLWDIASRRTVCQFPGHQGAVRGLTASTDGRIL 124
Query: 183 VSCGVDCTVRLWNVPVQDIMESDDSSD 263
VSCG DCTVRLWNVPV I +SDDSSD
Sbjct: 125 VSCGTDCTVRLWNVPVATISDSDDSSD 151
Score = 95.1 bits (235), Expect(3) = e-109
Identities = 44/49 (89%), Positives = 45/49 (91%)
Frame = +2
Query: 632 RDHVSAVMDIDYSPTEREFVMGSYDRTVRIFQYNGGHSREIYHTTRMNR 778
+DHVSAVMDIDYSPT REFV GSYDRTVRIFQYNGGHSREIYHT RM R
Sbjct: 286 KDHVSAVMDIDYSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQR 334
Score = 102 bits (253), Expect(3) = 1e-34
Identities = 46/79 (58%), Positives = 67/79 (84%)
Frame = +3
Query: 1044 KLRGSEQLGIQLPRERRRHEYYDALIKASHKNLPCVKRILRNRHLPKPLYKSVILKRTML 1223
K + SEQLG+ LPRER++HEY++A +K +K+LP VKRI+R+RHLPKP++K+ L+RTM
Sbjct: 360 KAKASEQLGVLLPRERKKHEYHEA-VKNRYKHLPEVKRIVRHRHLPKPIFKAAALRRTMT 418
Query: 1224 ASHRKKDKRRKAHSAPGSM 1280
+ R+K+++RKAHSAPGS+
Sbjct: 419 EAERRKEEKRKAHSAPGSI 437
Score = 58.5 bits (140), Expect(3) = 1e-34
Identities = 25/35 (71%), Positives = 28/35 (80%)
Frame = +2
Query: 965 RVFCAKFSCDGTYVISASDDTNLRLWKAKGIRTVG 1069
RVFC KF+CD +YVIS SDDTNLRLWKAK +G
Sbjct: 334 RVFCVKFTCDASYVISGSDDTNLRLWKAKASEQLG 368
Score = 34.7 bits (78), Expect(3) = 1e-34
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +1
Query: 1345 HSAPGSMKTEPMRRRRIVK 1401
HSAPGS+ TEP+R+RRI++
Sbjct: 431 HSAPGSISTEPLRKRRIIQ 449
>ref|XP_003519367.1| PREDICTED: DDB1- and CUL4-associated factor 13-like [Glycine max]
Length = 452
Score = 200 bits (508), Expect(3) = e-108
Identities = 91/116 (78%), Positives = 102/116 (87%)
Frame = +1
Query: 283 DHQWDGEQFATAGAQVDIWNHNRSEPVSSFHWGNDTVTSVRFNPGQPNLLLTSSRDRSIT 462
DHQWDGE FATAGAQVDIWNHNRS+P++SF WG+DTV SVRFNPG+PNLL TS+ DRSI
Sbjct: 170 DHQWDGEHFATAGAQVDIWNHNRSQPINSFEWGSDTVISVRFNPGEPNLLATSASDRSII 229
Query: 463 LCDLRSSSSLGKLVMKTKTNSIC*NPMEPMNFTAANEDSNCYTYDARKLDMAKCVH 630
L DLR SS + K++M TKTNSIC NPMEP+NFTAANED NCY+YDARKLD AKCVH
Sbjct: 230 LYDLRMSSPVRKMIMMTKTNSICWNPMEPINFTAANEDGNCYSYDARKLDEAKCVH 285
Score = 148 bits (374), Expect(3) = e-108
Identities = 66/86 (76%), Positives = 77/86 (89%)
Frame = +3
Query: 3 HLDAVS*MAKNPKYLKGIFSGSMDGDIRLWDMASRRTVCQFPGHQGAVRGLTVSTDGRLL 182
H+DAVS M +NP LKGIFS SMDGDIRLWD+A+RRTVCQFPGH+GAVRGLT STDGR+L
Sbjct: 65 HVDAVSCMTRNPSQLKGIFSSSMDGDIRLWDLAARRTVCQFPGHRGAVRGLTASTDGRIL 124
Query: 183 VSCGVDCTVRLWNVPVQDIMESDDSS 260
VSCG DCT+RLW+VP+ +MESDDS+
Sbjct: 125 VSCGTDCTIRLWSVPITTLMESDDST 150
Score = 94.7 bits (234), Expect(3) = e-108
Identities = 43/49 (87%), Positives = 45/49 (91%)
Frame = +2
Query: 632 RDHVSAVMDIDYSPTEREFVMGSYDRTVRIFQYNGGHSREIYHTTRMNR 778
RDHVSAVMD+DYSPT REFV GSYDRTVRIFQYNGGHS+EIYHT RM R
Sbjct: 286 RDHVSAVMDVDYSPTGREFVTGSYDRTVRIFQYNGGHSKEIYHTKRMQR 334
Score = 94.0 bits (232), Expect(3) = 3e-31
Identities = 44/79 (55%), Positives = 63/79 (79%)
Frame = +3
Query: 1044 KLRGSEQLGIQLPRERRRHEYYDALIKASHKNLPCVKRILRNRHLPKPLYKSVILKRTML 1223
K + SEQLG+ LPRER++HEY++A IK +K+LP V RI R+RHLP+P++K+ L R M
Sbjct: 360 KAKASEQLGVILPRERKKHEYHEA-IKKRYKHLPEVNRIARHRHLPRPIFKASALMRVMA 418
Query: 1224 ASHRKKDKRRKAHSAPGSM 1280
+ R+K+++RKAHSAPGS+
Sbjct: 419 DAKRRKEEKRKAHSAPGSI 437
Score = 53.9 bits (128), Expect(3) = 3e-31
Identities = 25/35 (71%), Positives = 27/35 (77%)
Frame = +2
Query: 965 RVFCAKFSCDGTYVISASDDTNLRLWKAKGIRTVG 1069
RVF KFS DG+YVIS SDDTNLRLWKAK +G
Sbjct: 334 RVFAVKFSGDGSYVISGSDDTNLRLWKAKASEQLG 368
Score = 35.8 bits (81), Expect(3) = 3e-31
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = +1
Query: 1345 HSAPGSMKTEPMRRRRIVK 1401
HSAPGS+ T+P+RRRRI+K
Sbjct: 431 HSAPGSITTQPLRRRRIIK 449
>ref|XP_003544166.1| PREDICTED: LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor
13-like [Glycine max]
Length = 452
Score = 200 bits (508), Expect(3) = e-106
Identities = 91/117 (77%), Positives = 102/117 (87%)
Frame = +1
Query: 283 DHQWDGEQFATAGAQVDIWNHNRSEPVSSFHWGNDTVTSVRFNPGQPNLLLTSSRDRSIT 462
DHQWDGE FATAGAQVDIWNHNRS+P++SF WG DTV SVRFNPG+PNLL TS+ DRSI
Sbjct: 170 DHQWDGEHFATAGAQVDIWNHNRSQPINSFEWGTDTVISVRFNPGEPNLLATSASDRSII 229
Query: 463 LCDLRSSSSLGKLVMKTKTNSIC*NPMEPMNFTAANEDSNCYTYDARKLDMAKCVHE 633
L DLR SS + K++M TKTNSIC NPMEP+NFTAANED NCY+YDARKLD AKCVH+
Sbjct: 230 LYDLRMSSPVRKMIMMTKTNSICWNPMEPINFTAANEDGNCYSYDARKLDEAKCVHK 286
Score = 143 bits (360), Expect(3) = e-106
Identities = 64/86 (74%), Positives = 74/86 (86%)
Frame = +3
Query: 3 HLDAVS*MAKNPKYLKGIFSGSMDGDIRLWDMASRRTVCQFPGHQGAVRGLTVSTDGRLL 182
H+DAVS M +NP LKGIFS SMDGDIRLWD+A+RR VCQFPGH+GAVRGLT STDG +L
Sbjct: 65 HIDAVSCMTRNPSQLKGIFSSSMDGDIRLWDLAARRIVCQFPGHRGAVRGLTASTDGHIL 124
Query: 183 VSCGVDCTVRLWNVPVQDIMESDDSS 260
VSCG DCT+RLW+VP +MESDDS+
Sbjct: 125 VSCGTDCTIRLWSVPXTTLMESDDST 150
Score = 93.6 bits (231), Expect(3) = e-106
Identities = 42/49 (85%), Positives = 45/49 (91%)
Frame = +2
Query: 632 RDHVSAVMDIDYSPTEREFVMGSYDRTVRIFQYNGGHSREIYHTTRMNR 778
+DHVSAVMD+DYSPT REFV GSYDRTVRIFQYNGGHS+EIYHT RM R
Sbjct: 286 KDHVSAVMDVDYSPTGREFVTGSYDRTVRIFQYNGGHSKEIYHTKRMQR 334
Score = 90.9 bits (224), Expect(3) = 2e-31
Identities = 43/79 (54%), Positives = 62/79 (78%)
Frame = +3
Query: 1044 KLRGSEQLGIQLPRERRRHEYYDALIKASHKNLPCVKRILRNRHLPKPLYKSVILKRTML 1223
K + SEQLG+ LPRER++HEY++A IK +K+LP V RI R+RHLP+P++K+ L M
Sbjct: 360 KAKASEQLGVILPRERKKHEYHEA-IKKRYKHLPEVNRIARHRHLPRPIFKASALMCVMA 418
Query: 1224 ASHRKKDKRRKAHSAPGSM 1280
+ R+K+++RKAHSAPGS+
Sbjct: 419 DAKRRKEEKRKAHSAPGSI 437
Score = 57.4 bits (137), Expect(3) = 2e-31
Identities = 26/35 (74%), Positives = 28/35 (80%)
Frame = +2
Query: 965 RVFCAKFSCDGTYVISASDDTNLRLWKAKGIRTVG 1069
RVFC KFS DG+YVIS SDDTNLRLWKAK +G
Sbjct: 334 RVFCVKFSGDGSYVISGSDDTNLRLWKAKASEQLG 368
Score = 35.8 bits (81), Expect(3) = 2e-31
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = +1
Query: 1345 HSAPGSMKTEPMRRRRIVK 1401
HSAPGS+ T+P+RRRRI+K
Sbjct: 431 HSAPGSITTQPLRRRRIIK 449
>gb|EEC70270.1| hypothetical protein OsI_01086 [Oryza sativa Indica Group]
Length = 452
Score = 189 bits (480), Expect(3) = e-102
Identities = 87/119 (73%), Positives = 101/119 (84%)
Frame = +1
Query: 280 VDHQWDGEQFATAGAQVDIWNHNRSEPVSSFHWGNDTVTSVRFNPGQPNLLLTSSRDRSI 459
VDHQWDG FAT GAQVDIW+ NRSEP++SF WG DTV SVRFNPG+P++L+TS+ DRSI
Sbjct: 169 VDHQWDGNLFATVGAQVDIWDQNRSEPINSFEWGKDTVLSVRFNPGEPDVLITSASDRSI 228
Query: 460 TLCDLRSSSSLGKLVMKTKTNSIC*NPMEPMNFTAANEDSNCYTYDARKLDMAKCVHEG 636
TL DLR SS KL+MKT+ NSIC NP EPMNFTAANED+NCY++DARKLD AK VH+G
Sbjct: 229 TLYDLRMSSPARKLIMKTRCNSICWNPREPMNFTAANEDTNCYSFDARKLDEAKVVHKG 287
Score = 143 bits (360), Expect(3) = e-102
Identities = 65/85 (76%), Positives = 76/85 (89%)
Frame = +3
Query: 3 HLDAVS*MAKNPKYLKGIFSGSMDGDIRLWDMASRRTVCQFPGHQGAVRGLTVSTDGRLL 182
H+DAVS MAKNP YLK IFSGSMDGDIRLWD+A+R+TVCQFPGHQGAVRGL STDG LL
Sbjct: 65 HVDAVSCMAKNPNYLKAIFSGSMDGDIRLWDIAARKTVCQFPGHQGAVRGLATSTDGDLL 124
Query: 183 VSCGVDCTVRLWNVPVQDIMESDDS 257
VSCGVDCTVRLW VP+ +++++D+
Sbjct: 125 VSCGVDCTVRLWKVPMLKMVDTNDA 149
Score = 89.7 bits (221), Expect(3) = e-102
Identities = 42/49 (85%), Positives = 43/49 (87%)
Frame = +2
Query: 632 RDHVSAVMDIDYSPTEREFVMGSYDRTVRIFQYNGGHSREIYHTTRMNR 778
+ HVSAVMDIDYSPT REFV GSYDRTVRIFQYNG HSREIYHT RM R
Sbjct: 286 KGHVSAVMDIDYSPTGREFVTGSYDRTVRIFQYNGDHSREIYHTKRMQR 334
Score = 102 bits (253), Expect(3) = 5e-33
Identities = 48/79 (60%), Positives = 65/79 (82%)
Frame = +3
Query: 1044 KLRGSEQLGIQLPRERRRHEYYDALIKASHKNLPCVKRILRNRHLPKPLYKSVILKRTML 1223
K + SEQLG+ LPRERR+ EY DA +K +K+LP VKRI+R+RHLPKP+YK+ L+RTM+
Sbjct: 360 KSKASEQLGVLLPRERRKQEYLDA-VKERYKHLPEVKRIVRHRHLPKPIYKAANLRRTMI 418
Query: 1224 ASHRKKDKRRKAHSAPGSM 1280
+ +K++RR+AHSAPGSM
Sbjct: 419 EAENRKEERRRAHSAPGSM 437
Score = 54.3 bits (129), Expect(3) = 5e-33
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +2
Query: 965 RVFCAKFSCDGTYVISASDDTNLRLWKAKGIRTVG 1069
RVFC K++ DGTY++S SDDTNLRLWK+K +G
Sbjct: 334 RVFCVKYTYDGTYLVSGSDDTNLRLWKSKASEQLG 368
Score = 33.5 bits (75), Expect(3) = 5e-33
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +1
Query: 1345 HSAPGSMKTEPMRRRRIVK 1401
HSAPGSM +P R+RRI+K
Sbjct: 431 HSAPGSMPVQPFRKRRIIK 449
>gb|EEE54204.1| hypothetical protein OsJ_01046 [Oryza sativa Japonica Group]
Length = 452
Score = 187 bits (476), Expect(3) = e-102
Identities = 86/119 (72%), Positives = 100/119 (84%)
Frame = +1
Query: 280 VDHQWDGEQFATAGAQVDIWNHNRSEPVSSFHWGNDTVTSVRFNPGQPNLLLTSSRDRSI 459
VDHQWDG FAT GAQVDIW+ NRSEP++SF WG DTV SVRFNPG+P++L+TS+ DRSI
Sbjct: 169 VDHQWDGNLFATVGAQVDIWDQNRSEPINSFEWGKDTVLSVRFNPGEPDVLITSASDRSI 228
Query: 460 TLCDLRSSSSLGKLVMKTKTNSIC*NPMEPMNFTAANEDSNCYTYDARKLDMAKCVHEG 636
TL DLR SS KL+MKT+ NSIC NP EPMNFTA NED+NCY++DARKLD AK VH+G
Sbjct: 229 TLYDLRMSSPARKLIMKTRCNSICWNPREPMNFTAVNEDTNCYSFDARKLDEAKVVHKG 287
Score = 143 bits (360), Expect(3) = e-102
Identities = 65/85 (76%), Positives = 76/85 (89%)
Frame = +3
Query: 3 HLDAVS*MAKNPKYLKGIFSGSMDGDIRLWDMASRRTVCQFPGHQGAVRGLTVSTDGRLL 182
H+DAVS MAKNP YLK IFSGSMDGDIRLWD+A+R+TVCQFPGHQGAVRGL STDG LL
Sbjct: 65 HVDAVSCMAKNPNYLKAIFSGSMDGDIRLWDIAARKTVCQFPGHQGAVRGLATSTDGDLL 124
Query: 183 VSCGVDCTVRLWNVPVQDIMESDDS 257
VSCGVDCTVRLW VP+ +++++D+
Sbjct: 125 VSCGVDCTVRLWKVPMLKMVDTNDA 149
Score = 89.7 bits (221), Expect(3) = e-102
Identities = 42/49 (85%), Positives = 43/49 (87%)
Frame = +2
Query: 632 RDHVSAVMDIDYSPTEREFVMGSYDRTVRIFQYNGGHSREIYHTTRMNR 778
+ HVSAVMDIDYSPT REFV GSYDRTVRIFQYNG HSREIYHT RM R
Sbjct: 286 KGHVSAVMDIDYSPTGREFVTGSYDRTVRIFQYNGDHSREIYHTKRMQR 334
Score = 102 bits (253), Expect(3) = 5e-33
Identities = 48/79 (60%), Positives = 65/79 (82%)
Frame = +3
Query: 1044 KLRGSEQLGIQLPRERRRHEYYDALIKASHKNLPCVKRILRNRHLPKPLYKSVILKRTML 1223
K + SEQLG+ LPRERR+ EY DA +K +K+LP VKRI+R+RHLPKP+YK+ L+RTM+
Sbjct: 360 KSKASEQLGVLLPRERRKQEYLDA-VKERYKHLPEVKRIVRHRHLPKPIYKAANLRRTMI 418
Query: 1224 ASHRKKDKRRKAHSAPGSM 1280
+ +K++RR+AHSAPGSM
Sbjct: 419 EAENRKEERRRAHSAPGSM 437
Score = 54.3 bits (129), Expect(3) = 5e-33
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +2
Query: 965 RVFCAKFSCDGTYVISASDDTNLRLWKAKGIRTVG 1069
RVFC K++ DGTY++S SDDTNLRLWK+K +G
Sbjct: 334 RVFCVKYTYDGTYLVSGSDDTNLRLWKSKASEQLG 368
Score = 33.5 bits (75), Expect(3) = 5e-33
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +1
Query: 1345 HSAPGSMKTEPMRRRRIVK 1401
HSAPGSM +P R+RRI+K
Sbjct: 431 HSAPGSMPVQPFRKRRIIK 449