BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010145
         (1510 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283557.1| PREDICTED: general transcription factor IIE ...   414   e-113
ref|XP_002299546.1| predicted protein [Populus trichocarpa] gi|2...   403   e-110
ref|XP_002509755.1| Transcription initiation factor IIE subunit ...   403   e-110
ref|XP_004146528.1| PREDICTED: general transcription factor IIE ...   397   e-108
tpg|DAA36096.1| TPA: hypothetical protein ZEAMMB73_089157 [Zea m...   385   e-104

>ref|XP_002283557.1| PREDICTED: general transcription factor IIE subunit 2 [Vitis
            vinifera] gi|297742556|emb|CBI34705.3| unnamed protein
            product [Vitis vinifera]
          Length = 285

 Score =  414 bits (1064), Expect = e-113
 Identities = 215/287 (74%), Positives = 236/287 (82%)
 Frame = -3

Query: 1199 SLQESLNKFKQQQGKVQSTLTSIAXXXXXXXXXXXXXXXXXXXXXXXRPVAVVQKAPSPA 1020
            +LQESL KFK+QQ K QSTLTSIA                          A   K P+PA
Sbjct: 2    ALQESLAKFKKQQEKCQSTLTSIAAKAGSSKPTVPQKFTP----------AAPTKPPTPA 51

Query: 1019 VKFSNDTERLQHINSIRKSPVGAQIKRVIDLLFDTRKAFTAEQINEACYVDIHNNKAVFD 840
            VKFSNDTERLQHINSIRK+PVGAQIKRVIDLL +TR+AFT EQINEACYVD + NKAVFD
Sbjct: 52   VKFSNDTERLQHINSIRKAPVGAQIKRVIDLLLETRQAFTPEQINEACYVDTNANKAVFD 111

Query: 839  SLRNNPKVRYEGKYFSYKSKHDLKHKEDLLRLVRKFPEGIAVIDLKDAYTTIMEDLQAMK 660
            SLRNNPKV Y+GK F+YKSKHDLK +  LL LVRKFPEGIAVIDLKD+Y ++MEDLQA+K
Sbjct: 112  SLRNNPKVSYDGKRFAYKSKHDLKDRSQLLVLVRKFPEGIAVIDLKDSYPSVMEDLQALK 171

Query: 659  AGGLIWLLSNFDSQEDIAYPNDPRVLLKVDDDLKQFFRGIELPRDMIDIEKDLQKNGMKP 480
            A G +WLLSNFDSQEDIAYPNDPRV +KVDDDLKQFFR IELPRDM+DIEKDLQKNGMKP
Sbjct: 172  AAGQVWLLSNFDSQEDIAYPNDPRVPIKVDDDLKQFFRTIELPRDMLDIEKDLQKNGMKP 231

Query: 479  ATNTARRRAMAQVHGIAPKSKAKKKQRDISKRTKLTNAHLPELFRNL 339
            ATNTA+RRAMAQVHGIA KSK KKK+ +ISKRTKLTNAHLPELF+NL
Sbjct: 232  ATNTAKRRAMAQVHGIASKSKPKKKKHEISKRTKLTNAHLPELFQNL 278


>ref|XP_002299546.1| predicted protein [Populus trichocarpa] gi|222846804|gb|EEE84351.1|
            predicted protein [Populus trichocarpa]
          Length = 284

 Score =  403 bits (1036), Expect = e-110
 Identities = 205/287 (71%), Positives = 235/287 (81%)
 Frame = -3

Query: 1199 SLQESLNKFKQQQGKVQSTLTSIAXXXXXXXXXXXXXXXXXXXXXXXRPVAVVQKAPSPA 1020
            +LQE L++FK+QQ K QSTLTSIA                          +   + P+PA
Sbjct: 2    ALQEQLDRFKKQQEKCQSTLTSIAKSRPSKSSLTQKTVAVAPAP------STSARTPAPA 55

Query: 1019 VKFSNDTERLQHINSIRKSPVGAQIKRVIDLLFDTRKAFTAEQINEACYVDIHNNKAVFD 840
            VKFSNDTERLQHINSIRK+P GAQIKRVIDLL +TR+AFT EQIN+ CYVD+++NKAVFD
Sbjct: 56   VKFSNDTERLQHINSIRKAPAGAQIKRVIDLLLETRQAFTPEQINDHCYVDMNSNKAVFD 115

Query: 839  SLRNNPKVRYEGKYFSYKSKHDLKHKEDLLRLVRKFPEGIAVIDLKDAYTTIMEDLQAMK 660
            SLRNNPKV Y+GK FSYKSKHDLK K  LL L+RKFPEGIAVIDLKD+Y ++M+DLQA+K
Sbjct: 116  SLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLIRKFPEGIAVIDLKDSYPSVMDDLQALK 175

Query: 659  AGGLIWLLSNFDSQEDIAYPNDPRVLLKVDDDLKQFFRGIELPRDMIDIEKDLQKNGMKP 480
            A G IWLLSNFDSQEDIAYPNDPR+++KVDDDLKQ FRGIELPRDM+DIEKDLQKNGMKP
Sbjct: 176  AVGQIWLLSNFDSQEDIAYPNDPRMVIKVDDDLKQLFRGIELPRDMLDIEKDLQKNGMKP 235

Query: 479  ATNTARRRAMAQVHGIAPKSKAKKKQRDISKRTKLTNAHLPELFRNL 339
            ATNTA+RRA AQV GI+ K KAKKK+ +ISKRTKLTNAHLPELF+NL
Sbjct: 236  ATNTAKRRAAAQVQGISTKQKAKKKKHEISKRTKLTNAHLPELFKNL 282


>ref|XP_002509755.1| Transcription initiation factor IIE subunit beta, putative [Ricinus
            communis] gi|223549654|gb|EEF51142.1| Transcription
            initiation factor IIE subunit beta, putative [Ricinus
            communis]
          Length = 282

 Score =  403 bits (1035), Expect = e-110
 Identities = 204/286 (71%), Positives = 235/286 (82%)
 Frame = -3

Query: 1196 LQESLNKFKQQQGKVQSTLTSIAXXXXXXXXXXXXXXXXXXXXXXXRPVAVVQKAPSPAV 1017
            LQE LNKFK+QQ K Q+TLTSIA                        P  ++ + P PAV
Sbjct: 3    LQEQLNKFKRQQEKCQTTLTSIAAKAGSHKPSITPKIVA--------PSPIIPRTPGPAV 54

Query: 1016 KFSNDTERLQHINSIRKSPVGAQIKRVIDLLFDTRKAFTAEQINEACYVDIHNNKAVFDS 837
            KFSNDTERLQHI+SIRK+PVGAQIKRVIDLLF+TR+AFT EQINEACYVD+++NKAVFDS
Sbjct: 55   KFSNDTERLQHIHSIRKAPVGAQIKRVIDLLFETRQAFTPEQINEACYVDVNSNKAVFDS 114

Query: 836  LRNNPKVRYEGKYFSYKSKHDLKHKEDLLRLVRKFPEGIAVIDLKDAYTTIMEDLQAMKA 657
            LRNNPKV Y+G++FSYKSKHDLK K+ LL L+R+F EGIAVIDLKDAY T+MEDLQA+KA
Sbjct: 115  LRNNPKVHYDGRHFSYKSKHDLKDKKQLLYLIREFKEGIAVIDLKDAYPTVMEDLQALKA 174

Query: 656  GGLIWLLSNFDSQEDIAYPNDPRVLLKVDDDLKQFFRGIELPRDMIDIEKDLQKNGMKPA 477
             G IWLLSNFDSQEDIAYPNDP+ ++KVDD+LK  FR IELPRDM+DIEKDLQKNGMKPA
Sbjct: 175  AGGIWLLSNFDSQEDIAYPNDPKAVIKVDDELKVKFREIELPRDMLDIEKDLQKNGMKPA 234

Query: 476  TNTARRRAMAQVHGIAPKSKAKKKQRDISKRTKLTNAHLPELFRNL 339
            TNTA+RRA AQV GI+ K K KKK ++ISK+TKLTNAHLPELF+NL
Sbjct: 235  TNTAKRRAAAQVQGISTKPKTKKKTKEISKKTKLTNAHLPELFQNL 280


>ref|XP_004146528.1| PREDICTED: general transcription factor IIE subunit 2-like [Cucumis
            sativus] gi|449499921|ref|XP_004160955.1| PREDICTED:
            general transcription factor IIE subunit 2-like [Cucumis
            sativus]
          Length = 277

 Score =  397 bits (1020), Expect = e-108
 Identities = 203/286 (70%), Positives = 233/286 (81%)
 Frame = -3

Query: 1199 SLQESLNKFKQQQGKVQSTLTSIAXXXXXXXXXXXXXXXXXXXXXXXRPVAVVQKAPSPA 1020
            +LQE L++FK+QQ + QSTL+ IA                        P A + + P+PA
Sbjct: 2    ALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPA---------PAASIARPPAPA 52

Query: 1019 VKFSNDTERLQHINSIRKSPVGAQIKRVIDLLFDTRKAFTAEQINEACYVDIHNNKAVFD 840
            VKFSNDTERLQHINSIRKSPVGAQIKRVIDLL +TR+AFT EQINEACYVDI++NKAV+D
Sbjct: 53   VKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYD 112

Query: 839  SLRNNPKVRYEGKYFSYKSKHDLKHKEDLLRLVRKFPEGIAVIDLKDAYTTIMEDLQAMK 660
            SLRNNPKV Y+G+ FSYKSKHDLK K  LL LVRKFPEGIAVIDLKDAY ++MEDLQA+K
Sbjct: 113  SLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALK 172

Query: 659  AGGLIWLLSNFDSQEDIAYPNDPRVLLKVDDDLKQFFRGIELPRDMIDIEKDLQKNGMKP 480
            A G +WLLSNFDSQEDIAYPNDPR+ +KVDDDLKQ FR IELPRDM+D+EKDLQKNGMKP
Sbjct: 173  ASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKP 232

Query: 479  ATNTARRRAMAQVHGIAPKSKAKKKQRDISKRTKLTNAHLPELFRN 342
            ATNTA+RRA AQ H  + K K KKK+++ISKRTKLTNAHLPELF+N
Sbjct: 233  ATNTAKRRANAQ-HVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277


>tpg|DAA36096.1| TPA: hypothetical protein ZEAMMB73_089157 [Zea mays]
          Length = 292

 Score =  385 bits (990), Expect = e-104
 Identities = 194/287 (67%), Positives = 228/287 (79%)
 Frame = -3

Query: 1196 LQESLNKFKQQQGKVQSTLTSIAXXXXXXXXXXXXXXXXXXXXXXXRPVAVVQKAPSPAV 1017
            L++SL+KFKQQQ + QS+L SIA                            V   PS  +
Sbjct: 16   LKDSLSKFKQQQERCQSSLASIAASTSKPKHRAQPAHAPN-----------VPARPSQPI 64

Query: 1016 KFSNDTERLQHINSIRKSPVGAQIKRVIDLLFDTRKAFTAEQINEACYVDIHNNKAVFDS 837
            KFSNDTERLQHINSIRKSPVGAQIK VI+LL+ TR+AFTAEQINEA YVDIH NKAVFDS
Sbjct: 65   KFSNDTERLQHINSIRKSPVGAQIKLVIELLYKTRQAFTAEQINEATYVDIHGNKAVFDS 124

Query: 836  LRNNPKVRYEGKYFSYKSKHDLKHKEDLLRLVRKFPEGIAVIDLKDAYTTIMEDLQAMKA 657
            LRNNPKV Y+G+ FSYKSKHDLK K+ LL L+RKFPEG+AV+++KDAY+ ++EDLQA+KA
Sbjct: 125  LRNNPKVSYDGRRFSYKSKHDLKGKDQLLVLIRKFPEGLAVVEVKDAYSNVLEDLQALKA 184

Query: 656  GGLIWLLSNFDSQEDIAYPNDPRVLLKVDDDLKQFFRGIELPRDMIDIEKDLQKNGMKPA 477
             G +WLLSN DSQEDI YPNDP+  +KVDDDLKQ FR IELPRDM+DIEK+LQKNG KP 
Sbjct: 185  AGEVWLLSNMDSQEDIVYPNDPKAKIKVDDDLKQLFREIELPRDMVDIEKELQKNGFKPM 244

Query: 476  TNTARRRAMAQVHGIAPKSKAKKKQRDISKRTKLTNAHLPELFRNLN 336
            TNTA+RRA AQ++G+ PK+K KKKQR+I+KRTKLTNAHLPELF+NLN
Sbjct: 245  TNTAKRRAAAQINGVKPKAKPKKKQREITKRTKLTNAHLPELFQNLN 291