BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010115
         (625 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA88922.1| sigma factor [Nicotiana tabacum]                      211   7e-53
ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-lik...   207   1e-51
emb|CBI26421.3| unnamed protein product [Vitis vinifera]              207   1e-51
dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                      204   1e-50
ref|XP_002319237.1| predicted protein [Populus trichocarpa] gi|2...   201   9e-50

>dbj|BAA88922.1| sigma factor [Nicotiana tabacum]
          Length = 502

 Score =  211 bits (538), Expect = 7e-53
 Identities = 102/116 (87%), Positives = 110/116 (94%)
 Frame = +3

Query: 3   ATSKVFSLDREAFPSLNGLPGETLHSYIADTRLENNPWHGVDEWTLKNEVNNLIKTTLRE 182
           A+SKVFSLDREAFPSLNGLPGETLHSYIAD RLEN PWHGVDEW LK+EVNNLI +TLRE
Sbjct: 383 ASSKVFSLDREAFPSLNGLPGETLHSYIADNRLENIPWHGVDEWMLKDEVNNLISSTLRE 442

Query: 183 REQDIVRLYYGLDKECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARRKRLETM 350
           RE++IVRLYYGLD ECLTWEDISRRIGLSRERVRQVGLVALEKLKHAAR++RL+ M
Sbjct: 443 REREIVRLYYGLDNECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARKRRLDAM 498


>ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
           vinifera]
          Length = 497

 Score =  207 bits (527), Expect = 1e-51
 Identities = 100/116 (86%), Positives = 107/116 (92%)
 Frame = +3

Query: 3   ATSKVFSLDREAFPSLNGLPGETLHSYIADTRLENNPWHGVDEWTLKNEVNNLIKTTLRE 182
           A SKVFSLDREAFPSLNGLPGETLHSYIAD RLENNPWHGVDEW LK+EVN LI TTL E
Sbjct: 378 AISKVFSLDREAFPSLNGLPGETLHSYIADVRLENNPWHGVDEWALKDEVNKLINTTLGE 437

Query: 183 REQDIVRLYYGLDKECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARRKRLETM 350
           RE+DI+RLYYGLD ECLTWEDIS+RIGLSRERVRQVGLVALEKLK+AAR+ R+E M
Sbjct: 438 RERDIIRLYYGLDNECLTWEDISKRIGLSRERVRQVGLVALEKLKNAARKGRMEAM 493


>emb|CBI26421.3| unnamed protein product [Vitis vinifera]
          Length = 555

 Score =  207 bits (527), Expect = 1e-51
 Identities = 100/116 (86%), Positives = 107/116 (92%)
 Frame = +3

Query: 3   ATSKVFSLDREAFPSLNGLPGETLHSYIADTRLENNPWHGVDEWTLKNEVNNLIKTTLRE 182
           A SKVFSLDREAFPSLNGLPGETLHSYIAD RLENNPWHGVDEW LK+EVN LI TTL E
Sbjct: 436 AISKVFSLDREAFPSLNGLPGETLHSYIADVRLENNPWHGVDEWALKDEVNKLINTTLGE 495

Query: 183 REQDIVRLYYGLDKECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARRKRLETM 350
           RE+DI+RLYYGLD ECLTWEDIS+RIGLSRERVRQVGLVALEKLK+AAR+ R+E M
Sbjct: 496 RERDIIRLYYGLDNECLTWEDISKRIGLSRERVRQVGLVALEKLKNAARKGRMEAM 551


>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  204 bits (519), Expect = 1e-50
 Identities = 95/116 (81%), Positives = 109/116 (93%)
 Frame = +3

Query: 3   ATSKVFSLDREAFPSLNGLPGETLHSYIADTRLENNPWHGVDEWTLKNEVNNLIKTTLRE 182
           A+SK++SLDREAFPSLNGLPGETLHSYIAD  LENNPWHGVD W LK+EVNNLI +TLR+
Sbjct: 389 ASSKMYSLDREAFPSLNGLPGETLHSYIADNHLENNPWHGVDVWALKDEVNNLISSTLRD 448

Query: 183 REQDIVRLYYGLDKECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARRKRLETM 350
           RE++I+RLYYGLD ECLTWEDIS+RIGLSRERVRQVGLVALEKLKHAAR+++L+ M
Sbjct: 449 REREIIRLYYGLDNECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRQLDAM 504


>ref|XP_002319237.1| predicted protein [Populus trichocarpa] gi|222857613|gb|EEE95160.1|
           predicted protein [Populus trichocarpa]
          Length = 499

 Score =  201 bits (511), Expect = 9e-50
 Identities = 96/116 (82%), Positives = 106/116 (91%)
 Frame = +3

Query: 3   ATSKVFSLDREAFPSLNGLPGETLHSYIADTRLENNPWHGVDEWTLKNEVNNLIKTTLRE 182
           A SKVFSLDREAFPSLNGLPGET HSYIAD RLENNPWHGVDEW LK EVN LI + L+E
Sbjct: 380 AISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGVDEWALKEEVNKLIDSALQE 439

Query: 183 REQDIVRLYYGLDKECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARRKRLETM 350
           RE++I+RLY+GLDKECLTWEDIS+R+GLSRERVRQVGLVALEKLKHAAR+ +LE M
Sbjct: 440 REREIIRLYHGLDKECLTWEDISKRMGLSRERVRQVGLVALEKLKHAARKGKLEAM 495