BLASTX nr result
ID: Coptis25_contig00010027
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00010027
(721 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN67842.1| hypothetical protein VITISV_016665 [Vitis vinifera] 181 2e-60
ref|XP_002270535.1| PREDICTED: U3 small nucleolar RNA-associated... 181 2e-60
emb|CBI32284.3| unnamed protein product [Vitis vinifera] 181 2e-60
ref|XP_004148880.1| PREDICTED: U3 small nucleolar RNA-associated... 166 2e-56
ref|XP_002301560.1| predicted protein [Populus trichocarpa] gi|2... 167 2e-52
>emb|CAN67842.1| hypothetical protein VITISV_016665 [Vitis vinifera]
Length = 570
Score = 181 bits (460), Expect(3) = 2e-60
Identities = 90/147 (61%), Positives = 111/147 (75%), Gaps = 3/147 (2%)
Frame = -3
Query: 620 LRRNSQNP---PESEYWRSYKSQEITNLIYPITSLSFSPTSPHNFITSFSASLTLYNTQT 450
L+ S+ P PES+YW S+KS I NLI ITSLSFSP +PH+F ++S SLTL+N++T
Sbjct: 18 LKAKSKKPSKTPESKYWSSFKSHTIPNLISSITSLSFSPATPHHFAAAYSTSLTLFNSKT 77
Query: 449 IVPISTFSSFNDMAYSPAFRSDGKLVAAGGETGLVQVFDVKSRLALRKLRGHSWPVRFVS 270
+ PIS+ SSF D+ +FRSDG L+AA +GLVQVFDVK+R ALRKLRGH+ PVR V
Sbjct: 78 LEPISSISSFKDVVSCASFRSDGLLIAASDHSGLVQVFDVKTRTALRKLRGHTRPVRLVR 137
Query: 269 YPCFDKLHLFSGGDDSLAKYWDVARSS 189
YP DKLHLFSGGDD++ KYWDVA S
Sbjct: 138 YPRSDKLHLFSGGDDAVVKYWDVAAES 164
Score = 55.8 bits (133), Expect(3) = 2e-60
Identities = 24/37 (64%), Positives = 29/37 (78%)
Frame = -2
Query: 198 EKQLLNFQGHKDYVRCGSVSPGSSELFATGSYDQRLR 88
E ++ F+GHKDYVRCG SP SSELFATGSYD ++
Sbjct: 163 ESGVVEFRGHKDYVRCGDGSPASSELFATGSYDHTVK 199
Score = 42.7 bits (99), Expect(3) = 2e-60
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = -1
Query: 97 TVKIWDSRTSSTSMKYVMEFNHGKPVEDVVFL 2
TVK+WD R S++ M+ NHGKPVEDV+FL
Sbjct: 197 TVKVWDVRVSNSDA--AMKINHGKPVEDVIFL 226
>ref|XP_002270535.1| PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog
[Vitis vinifera]
Length = 528
Score = 181 bits (460), Expect(3) = 2e-60
Identities = 90/147 (61%), Positives = 111/147 (75%), Gaps = 3/147 (2%)
Frame = -3
Query: 620 LRRNSQNP---PESEYWRSYKSQEITNLIYPITSLSFSPTSPHNFITSFSASLTLYNTQT 450
L+ S+ P PES+YW S+KS I NLI ITSLSFSP +PH+F ++S SLTL+N++T
Sbjct: 18 LKAKSKKPSKTPESKYWSSFKSHTIPNLISSITSLSFSPATPHHFAAAYSTSLTLFNSKT 77
Query: 449 IVPISTFSSFNDMAYSPAFRSDGKLVAAGGETGLVQVFDVKSRLALRKLRGHSWPVRFVS 270
+ PIS+ SSF D+ +FRSDG L+AA +GLVQVFDVK+R ALRKLRGH+ PVR V
Sbjct: 78 LEPISSISSFKDVVSCASFRSDGLLIAASDHSGLVQVFDVKTRTALRKLRGHTRPVRLVR 137
Query: 269 YPCFDKLHLFSGGDDSLAKYWDVARSS 189
YP DKLHLFSGGDD++ KYWDVA S
Sbjct: 138 YPRSDKLHLFSGGDDAVVKYWDVAAES 164
Score = 55.8 bits (133), Expect(3) = 2e-60
Identities = 24/37 (64%), Positives = 29/37 (78%)
Frame = -2
Query: 198 EKQLLNFQGHKDYVRCGSVSPGSSELFATGSYDQRLR 88
E ++ F+GHKDYVRCG SP SSELFATGSYD ++
Sbjct: 163 ESGVVEFRGHKDYVRCGDGSPASSELFATGSYDHTVK 199
Score = 42.7 bits (99), Expect(3) = 2e-60
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = -1
Query: 97 TVKIWDSRTSSTSMKYVMEFNHGKPVEDVVFL 2
TVK+WD R S++ M+ NHGKPVEDV+FL
Sbjct: 197 TVKVWDVRVSNSDA--AMKINHGKPVEDVIFL 226
>emb|CBI32284.3| unnamed protein product [Vitis vinifera]
Length = 460
Score = 181 bits (460), Expect(3) = 2e-60
Identities = 90/147 (61%), Positives = 111/147 (75%), Gaps = 3/147 (2%)
Frame = -3
Query: 620 LRRNSQNP---PESEYWRSYKSQEITNLIYPITSLSFSPTSPHNFITSFSASLTLYNTQT 450
L+ S+ P PES+YW S+KS I NLI ITSLSFSP +PH+F ++S SLTL+N++T
Sbjct: 18 LKAKSKKPSKTPESKYWSSFKSHTIPNLISSITSLSFSPATPHHFAAAYSTSLTLFNSKT 77
Query: 449 IVPISTFSSFNDMAYSPAFRSDGKLVAAGGETGLVQVFDVKSRLALRKLRGHSWPVRFVS 270
+ PIS+ SSF D+ +FRSDG L+AA +GLVQVFDVK+R ALRKLRGH+ PVR V
Sbjct: 78 LEPISSISSFKDVVSCASFRSDGLLIAASDHSGLVQVFDVKTRTALRKLRGHTRPVRLVR 137
Query: 269 YPCFDKLHLFSGGDDSLAKYWDVARSS 189
YP DKLHLFSGGDD++ KYWDVA S
Sbjct: 138 YPRSDKLHLFSGGDDAVVKYWDVAAES 164
Score = 55.8 bits (133), Expect(3) = 2e-60
Identities = 24/37 (64%), Positives = 29/37 (78%)
Frame = -2
Query: 198 EKQLLNFQGHKDYVRCGSVSPGSSELFATGSYDQRLR 88
E ++ F+GHKDYVRCG SP SSELFATGSYD ++
Sbjct: 163 ESGVVEFRGHKDYVRCGDGSPASSELFATGSYDHTVK 199
Score = 42.7 bits (99), Expect(3) = 2e-60
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = -1
Query: 97 TVKIWDSRTSSTSMKYVMEFNHGKPVEDVVFL 2
TVK+WD R S++ M+ NHGKPVEDV+FL
Sbjct: 197 TVKVWDVRVSNSDA--AMKINHGKPVEDVIFL 226
>ref|XP_004148880.1| PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog
[Cucumis sativus] gi|449528790|ref|XP_004171386.1|
PREDICTED: U3 small nucleolar RNA-associated protein 15
homolog [Cucumis sativus]
Length = 528
Score = 166 bits (421), Expect(4) = 2e-56
Identities = 80/139 (57%), Positives = 101/139 (72%)
Frame = -3
Query: 614 RNSQNPPESEYWRSYKSQEITNLIYPITSLSFSPTSPHNFITSFSASLTLYNTQTIVPIS 435
R + PES+YW S+K EI NL+ ++S++FSPT+P F + SASLTL++ QT+ P S
Sbjct: 24 RTPKQTPESKYWSSFKRHEIPNLLSSVSSIAFSPTNPSIFCATHSASLTLFSAQTMAPTS 83
Query: 434 TFSSFNDMAYSPAFRSDGKLVAAGGETGLVQVFDVKSRLALRKLRGHSWPVRFVSYPCFD 255
T SSF D+ +FR DG L+AA +GLVQVFDVK+R LRKLR HS PV+FV YP D
Sbjct: 84 TISSFRDVVSCASFRCDGLLIAASDLSGLVQVFDVKTRTPLRKLRSHSRPVQFVQYPVLD 143
Query: 254 KLHLFSGGDDSLAKYWDVA 198
KLHL SGGDD++ KYWDVA
Sbjct: 144 KLHLVSGGDDAVVKYWDVA 162
Score = 48.5 bits (114), Expect(4) = 2e-56
Identities = 19/32 (59%), Positives = 25/32 (78%)
Frame = -2
Query: 183 NFQGHKDYVRCGSVSPGSSELFATGSYDQRLR 88
+F GHKDYVRCG+ SP S ++F TGSYD ++
Sbjct: 169 DFLGHKDYVRCGACSPASMDMFITGSYDHTVK 200
Score = 47.8 bits (112), Expect(4) = 2e-56
Identities = 22/32 (68%), Positives = 27/32 (84%)
Frame = -1
Query: 97 TVKIWDSRTSSTSMKYVMEFNHGKPVEDVVFL 2
TVK+WD+RT+S S V+E NHGKPVEDV+FL
Sbjct: 198 TVKLWDARTNSKS---VLEVNHGKPVEDVIFL 226
Score = 24.3 bits (51), Expect(4) = 2e-56
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 663 TLTKTYPVQTRLKPTPSKLSKSP 595
+LT+T+PV+ +LK P ++P
Sbjct: 8 SLTRTFPVKPKLKSKPRTPKQTP 30
>ref|XP_002301560.1| predicted protein [Populus trichocarpa] gi|222843286|gb|EEE80833.1|
predicted protein [Populus trichocarpa]
Length = 534
Score = 167 bits (423), Expect(3) = 2e-52
Identities = 83/151 (54%), Positives = 107/151 (70%)
Frame = -3
Query: 641 SKLALNPLRRNSQNPPESEYWRSYKSQEITNLIYPITSLSFSPTSPHNFITSFSASLTLY 462
+K L P + PES+YW S+KS +I+NLI I S+ FSP SPH F + SASLTL+
Sbjct: 20 TKPKLKPKAKTPSKTPESKYWSSFKSHQISNLISSIPSIDFSPISPHQFAAANSASLTLF 79
Query: 461 NTQTIVPISTFSSFNDMAYSPAFRSDGKLVAAGGETGLVQVFDVKSRLALRKLRGHSWPV 282
++QT+ P ST S F+D+ S +FR DG L+AA +GL++VFDVK+R LR+L+ H+ PV
Sbjct: 80 SSQTLSPTSTIS-FSDVVTSCSFRCDGSLIAASDLSGLIRVFDVKTRTPLRRLKSHTRPV 138
Query: 281 RFVSYPCFDKLHLFSGGDDSLAKYWDVARSS 189
RFV YP DKLHL SGGDDS+ KYWDVA S
Sbjct: 139 RFVKYPLLDKLHLVSGGDDSVVKYWDVAGES 169
Score = 43.5 bits (101), Expect(3) = 2e-52
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = -2
Query: 198 EKQLLNFQGHKDYVRCGSVSPGSSELFATGSYDQRLR 88
E + + GH+DY RCG SP + E+F TGSYD ++
Sbjct: 168 ESVVSDLYGHRDYARCGDCSPINGEIFVTGSYDHTVK 204
Score = 42.4 bits (98), Expect(3) = 2e-52
Identities = 20/32 (62%), Positives = 23/32 (71%)
Frame = -1
Query: 97 TVKIWDSRTSSTSMKYVMEFNHGKPVEDVVFL 2
TVK+WD R S V+E NHGKPVEDV+FL
Sbjct: 202 TVKLWDVRVDSKES--VIEVNHGKPVEDVIFL 231