BLASTX nr result

ID: Coptis25_contig00010003 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010003
         (214 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273902.2| PREDICTED: ubiquitin-like modifier-activatin...   109   3e-22
emb|CBI30675.3| unnamed protein product [Vitis vinifera]              109   3e-22
ref|XP_002305077.1| predicted protein [Populus trichocarpa] gi|2...   102   4e-20
emb|CAN82981.1| hypothetical protein VITISV_023331 [Vitis vinifera]   101   5e-20
ref|XP_004134663.1| PREDICTED: ubiquitin-like modifier-activatin...    99   4e-19

>ref|XP_002273902.2| PREDICTED: ubiquitin-like modifier-activating enzyme atg7-like
           [Vitis vinifera]
          Length = 711

 Score =  109 bits (272), Expect = 3e-22
 Identities = 53/67 (79%), Positives = 57/67 (85%)
 Frame = -3

Query: 209 LQFVLFDSLVDEGFWHRLSSLKLDTLGIDQSPINITGFYAPCSHALNSNHMTLLAESLPP 30
           LQF  F S VDEGFWHRLSSLKL+ LGID SPI+ITGFYAPCSH+  SNH+TLLAESLPP
Sbjct: 10  LQFAPFQSSVDEGFWHRLSSLKLNKLGIDDSPISITGFYAPCSHSQVSNHLTLLAESLPP 69

Query: 29  ELGEQSS 9
           E  EQSS
Sbjct: 70  EPSEQSS 76


>emb|CBI30675.3| unnamed protein product [Vitis vinifera]
          Length = 787

 Score =  109 bits (272), Expect = 3e-22
 Identities = 53/67 (79%), Positives = 57/67 (85%)
 Frame = -3

Query: 209 LQFVLFDSLVDEGFWHRLSSLKLDTLGIDQSPINITGFYAPCSHALNSNHMTLLAESLPP 30
           LQF  F S VDEGFWHRLSSLKL+ LGID SPI+ITGFYAPCSH+  SNH+TLLAESLPP
Sbjct: 86  LQFAPFQSSVDEGFWHRLSSLKLNKLGIDDSPISITGFYAPCSHSQVSNHLTLLAESLPP 145

Query: 29  ELGEQSS 9
           E  EQSS
Sbjct: 146 EPSEQSS 152


>ref|XP_002305077.1| predicted protein [Populus trichocarpa] gi|222848041|gb|EEE85588.1|
           predicted protein [Populus trichocarpa]
          Length = 715

 Score =  102 bits (253), Expect = 4e-20
 Identities = 49/68 (72%), Positives = 56/68 (82%)
 Frame = -3

Query: 209 LQFVLFDSLVDEGFWHRLSSLKLDTLGIDQSPINITGFYAPCSHALNSNHMTLLAESLPP 30
           LQFV F+SL DEGFWHRLSSLKL+  GID SPI ITGFYAPCSH+  SNH+ LLAESLP 
Sbjct: 19  LQFVPFNSLADEGFWHRLSSLKLNKYGIDDSPIPITGFYAPCSHSQVSNHLRLLAESLPT 78

Query: 29  ELGEQSSL 6
           +  +QSS+
Sbjct: 79  DENDQSSM 86


>emb|CAN82981.1| hypothetical protein VITISV_023331 [Vitis vinifera]
          Length = 712

 Score =  101 bits (252), Expect = 5e-20
 Identities = 51/67 (76%), Positives = 54/67 (80%)
 Frame = -3

Query: 209 LQFVLFDSLVDEGFWHRLSSLKLDTLGIDQSPINITGFYAPCSHALNSNHMTLLAESLPP 30
           LQFV F S VDE FWHRLSSLKL+ LGID SPI+ITG YAPCS +  SNH TLLAESLPP
Sbjct: 168 LQFVPFQSAVDEAFWHRLSSLKLNKLGIDDSPISITGSYAPCSRSQVSNHSTLLAESLPP 227

Query: 29  ELGEQSS 9
           E  EQSS
Sbjct: 228 EPSEQSS 234


>ref|XP_004134663.1| PREDICTED: ubiquitin-like modifier-activating enzyme atg7-like
           [Cucumis sativus]
          Length = 694

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 48/67 (71%), Positives = 54/67 (80%)
 Frame = -3

Query: 209 LQFVLFDSLVDEGFWHRLSSLKLDTLGIDQSPINITGFYAPCSHALNSNHMTLLAESLPP 30
           LQF    S VDEGFWHRLSSLKL+ LGID SPI ITGF+APCSH+L SNH+TLL+ESLP 
Sbjct: 9   LQFAPLQSAVDEGFWHRLSSLKLNQLGIDDSPIPITGFFAPCSHSLLSNHLTLLSESLPI 68

Query: 29  ELGEQSS 9
           E+   SS
Sbjct: 69  EVRRDSS 75


Top