BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00008551
         (342 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN67400.1| hypothetical protein VITISV_025966 [Vitis vinifera]   104   9e-21
emb|CBI22376.3| unnamed protein product [Vitis vinifera]              102   4e-20
ref|NP_172337.1| pentatricopeptide repeat-containing protein [Ar...    89   5e-16
ref|XP_002892464.1| pentatricopeptide repeat-containing protein ...    89   5e-16
ref|XP_002521979.1| pentatricopeptide repeat-containing protein,...    86   4e-15

>emb|CAN67400.1| hypothetical protein VITISV_025966 [Vitis vinifera]
          Length = 550

 Score =  104 bits (259), Expect = 9e-21
 Identities = 55/116 (47%), Positives = 77/116 (66%), Gaps = 18/116 (15%)
 Frame = +1

Query: 49  RTSAFVLRCSGQQRSVCIDKVNRSRRDIWR------GVQK------------NPLWLSFD 174
           R +A +LRC GQ+RSVCID+VN   ++ W       GV+K            N    SFD
Sbjct: 64  RRNALLLRCIGQERSVCIDRVNGEDQE-WSSGRYAFGVEKKLREQMSSKKYSNSSNSSFD 122

Query: 175 GPFVDNDADSNNDILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLINM 342
           G FV ND ++NN+IL++ C+ GK++ AS LI+ MAR++QIP+FP+CIN+IRGLI +
Sbjct: 123 GSFVGNDEETNNEILQNLCSKGKLVNASRLIDVMARRNQIPYFPSCINLIRGLIKL 178


>emb|CBI22376.3| unnamed protein product [Vitis vinifera]
          Length = 554

 Score =  102 bits (253), Expect = 4e-20
 Identities = 54/116 (46%), Positives = 76/116 (65%), Gaps = 18/116 (15%)
 Frame = +1

Query: 49  RTSAFVLRCSGQQRSVCIDKVNRSRRDIWR------GVQK------------NPLWLSFD 174
           R +A +LRC GQ+RSVCID+VN   ++ W       GV+K            N    S D
Sbjct: 64  RRNALLLRCIGQERSVCIDRVNGEDQE-WSSGRYAFGVEKKLREQMSSKKYSNSSNSSLD 122

Query: 175 GPFVDNDADSNNDILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLINM 342
           G FV ND ++NN+IL++ C+ GK++ AS LI+ MAR++QIP+FP+CIN+IRGLI +
Sbjct: 123 GSFVGNDEETNNEILQNLCSKGKLVNASRLIDVMARRNQIPYFPSCINLIRGLIKL 178


>ref|NP_172337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75262899|sp|Q9FRS4.1|PPR22_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g08610 gi|9802579|gb|AAF99781.1|AC003981_31 F22O13.9
           [Arabidopsis thaliana] gi|332190196|gb|AEE28317.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 559

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 13/114 (11%)
 Frame = +1

Query: 31  KSEVEFRTSAFVLRCSGQQRSVCIDKVN----RSRRDIWRGVQKN---------PLWLSF 171
           K E+  +   F  RC G   SVCID VN    RS      GV  N            LS 
Sbjct: 37  KQEIGLKKDVF-FRCHGLLSSVCIDNVNDHAERSSEFHHYGVGTNLRARVKPMKQFGLSS 95

Query: 172 DGPFVDNDADSNNDILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGL 333
           DGP  +ND ++NN+IL + C+NGK+ +A  L+  MAR +Q+PHFP+C N++RGL
Sbjct: 96  DGPITENDEETNNEILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGL 149


>ref|XP_002892464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297338306|gb|EFH68723.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 555

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 46/101 (45%), Positives = 60/101 (59%), Gaps = 12/101 (11%)
 Frame = +1

Query: 67  LRCSGQQRSVCIDKV-------NRSRRDIWRGVQKN-----PLWLSFDGPFVDNDADSNN 210
           LRC G   SVCID V        RS      GV  N      L LS DGP  +ND ++NN
Sbjct: 45  LRCHGLMTSVCIDNVADVDDHAERSSEFHHYGVGNNLRARKQLGLSSDGPITENDEETNN 104

Query: 211 DILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGL 333
           +IL + C+NGK+ +A  L+  MAR +Q+PHFP+C N++RGL
Sbjct: 105 EILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGL 145


>ref|XP_002521979.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538783|gb|EEF40383.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 496

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 17/122 (13%)
 Frame = +1

Query: 28  RKSEVEFRTSAFVLRCSGQQRSVCIDKVNRSRRDIWRGVQ---------------KNPLW 162
           R  ++    + F L+C G Q+SV IDKV+++  D W                   KN + 
Sbjct: 25  RTGDLHSGRTLFPLQCKGLQKSVSIDKVDKNDHDDWSSETLVLDVGRKFREQMNTKNHVS 84

Query: 163 LS--FDGPFVDNDADSNNDILESFCNNGKIMEASNLINTMARKSQIPHFPNCINIIRGLI 336
                +GPFV+N+ + NN+IL+  CN G++M+A  LI+ MAR+SQIP+F  C N+IRG I
Sbjct: 85  PKSYIEGPFVENEEEINNEILQHLCNKGRLMDAPRLIDVMARRSQIPNFSCCTNLIRGFI 144

Query: 337 NM 342
            +
Sbjct: 145 KV 146