BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004965
         (282 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263359.1| PREDICTED: small nuclear ribonucleoprotein-a...   123   2e-26
ref|XP_002332199.1| predicted protein [Populus trichocarpa] gi|2...   120   1e-25
ref|XP_002317685.1| predicted protein [Populus trichocarpa] gi|2...   120   1e-25
gb|ABK93409.1| unknown [Populus trichocarpa]                          120   1e-25
ref|NP_193777.1| small nuclear ribonucleoprotein associated prot...   118   4e-25

>ref|XP_002263359.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B'
           [Vitis vinifera] gi|147774905|emb|CAN61706.1|
           hypothetical protein VITISV_001610 [Vitis vinifera]
          Length = 276

 Score =  123 bits (308), Expect = 2e-26
 Identities = 60/77 (77%), Positives = 62/77 (80%)
 Frame = +2

Query: 50  LQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNEEREDXXXXX 229
           LQYINYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNEERE+     
Sbjct: 10  LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNEEREERRTLG 69

Query: 230 XXXXXXXXXXSMTVEGP 280
                     SMTVEGP
Sbjct: 70  LVLLRGEEVISMTVEGP 86


>ref|XP_002332199.1| predicted protein [Populus trichocarpa] gi|222875306|gb|EEF12437.1|
           predicted protein [Populus trichocarpa]
          Length = 289

 Score =  120 bits (300), Expect = 1e-25
 Identities = 61/78 (78%), Positives = 62/78 (79%), Gaps = 1/78 (1%)
 Frame = +2

Query: 50  LQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK-NEEREDXXXX 226
           LQYINYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEERED    
Sbjct: 10  LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNEEREDRRTL 69

Query: 227 XXXXXXXXXXXSMTVEGP 280
                      SMTVEGP
Sbjct: 70  GLVLLRGEEVISMTVEGP 87


>ref|XP_002317685.1| predicted protein [Populus trichocarpa] gi|222860750|gb|EEE98297.1|
           predicted protein [Populus trichocarpa]
          Length = 250

 Score =  120 bits (300), Expect = 1e-25
 Identities = 61/78 (78%), Positives = 62/78 (79%), Gaps = 1/78 (1%)
 Frame = +2

Query: 50  LQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK-NEEREDXXXX 226
           LQYINYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEERED    
Sbjct: 10  LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNEEREDRRTL 69

Query: 227 XXXXXXXXXXXSMTVEGP 280
                      SMTVEGP
Sbjct: 70  GLVLLRGEEVISMTVEGP 87


>gb|ABK93409.1| unknown [Populus trichocarpa]
          Length = 286

 Score =  120 bits (300), Expect = 1e-25
 Identities = 61/78 (78%), Positives = 62/78 (79%), Gaps = 1/78 (1%)
 Frame = +2

Query: 50  LQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK-NEEREDXXXX 226
           LQYINYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEERED    
Sbjct: 10  LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNEEREDRRTL 69

Query: 227 XXXXXXXXXXXSMTVEGP 280
                      SMTVEGP
Sbjct: 70  GLVLLRGEEVISMTVEGP 87


>ref|NP_193777.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|30685110|ref|NP_849414.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|79325195|ref|NP_001031682.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|238480869|ref|NP_001154258.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|5262167|emb|CAB45810.1| putative snRNP
           protein [Arabidopsis thaliana]
           gi|7268840|emb|CAB79044.1| putative snRNP protein
           [Arabidopsis thaliana] gi|28393634|gb|AAO42236.1|
           putative snRNP protein [Arabidopsis thaliana]
           gi|28827492|gb|AAO50590.1| putative snRNP protein
           [Arabidopsis thaliana] gi|222423490|dbj|BAH19715.1|
           AT4G20440 [Arabidopsis thaliana]
           gi|332658930|gb|AEE84330.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|332658931|gb|AEE84331.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|332658932|gb|AEE84332.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|332658933|gb|AEE84333.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana]
          Length = 257

 Score =  118 bits (296), Expect = 4e-25
 Identities = 60/78 (76%), Positives = 62/78 (79%), Gaps = 1/78 (1%)
 Frame = +2

Query: 50  LQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK-NEEREDXXXX 226
           LQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEERED    
Sbjct: 10  LQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDRRTL 69

Query: 227 XXXXXXXXXXXSMTVEGP 280
                      SMTVEGP
Sbjct: 70  GLVLLRGEEVISMTVEGP 87