BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004903
         (325 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...    67   2e-09
gb|EEE61581.1| hypothetical protein OsJ_15963 [Oryza sativa Japo...    61   1e-07
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...    60   1e-07
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...    59   5e-07
gb|EEC69280.1| hypothetical protein OsI_38331 [Oryza sativa Indi...    59   5e-07

>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 29/96 (30%), Positives = 53/96 (55%)
 Frame = +1

Query: 4    KDENFWKQKSSTDWIKDGGRNTKFYHISTIYXXXXXXXXXXXXEEGNWKEGRAEVGHSLN 183
            +DE +W Q+S  +W+K G +N+ F+H +TI             + GNW +  A+V     
Sbjct: 940  QDEMYWHQRSRVNWLKLGDQNSSFFHQTTIQRRQYNKIVRLKDDHGNWLDSEADVALQFL 999

Query: 184  QYFSEMFTSDQPERDDQILDLFQSIVSDRENDILTS 291
             YF+ ++ S+ P++ +++LD   + V+   N IL+S
Sbjct: 1000 DYFTALYQSNGPQQWEEVLDFVDTAVTAEMNKILSS 1035


>gb|EEE61581.1| hypothetical protein OsJ_15963 [Oryza sativa Japonica Group]
          Length = 1494

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 24/95 (25%), Positives = 50/95 (52%)
 Frame = +1

Query: 4   KDENFWKQKSSTDWIKDGGRNTKFYHISTIYXXXXXXXXXXXXEEGNWKEGRAEVGHSLN 183
           ++E +WKQ+S   W+K+G RNT+++H+   +             +G       E+G    
Sbjct: 583 REEIWWKQRSRITWLKEGDRNTRYFHLKASWRARKNLIKKLRRSDGMMCSKEEELGEIAR 642

Query: 184 QYFSEMFTSDQPERDDQILDLFQSIVSDRENDILT 288
            +F +++T D+     ++L++F+  ++D  N +LT
Sbjct: 643 SFFRDLYTKDESLNPGELLNMFEPKITDEMNGMLT 677


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 30/95 (31%), Positives = 48/95 (50%)
 Frame = +1

Query: 7   DENFWKQKSSTDWIKDGGRNTKFYHISTIYXXXXXXXXXXXXEEGNWKEGRAEVGHSLNQ 186
           +E +W QKS + W+K G  N+KF+H  T              E G W     ++ +    
Sbjct: 116 EEQYWYQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNIAVS 175

Query: 187 YFSEMFTSDQPERDDQILDLFQSIVSDRENDILTS 291
           YF  +FT+  P+  D+ L   Q +++DR ND+LT+
Sbjct: 176 YFQNLFTTANPQVFDEALGEVQVLITDRINDLLTA 210


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1621

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 27/99 (27%), Positives = 50/99 (50%)
 Frame = +1

Query: 16  FWKQKSSTDWIKDGGRNTKFYHISTIYXXXXXXXXXXXXEEGNWKEGRAEVGHSLNQYFS 195
           +WKQ++ T+W+  G RNT F+H S               E+G+W E   +    + ++F 
Sbjct: 591 YWKQRAHTNWLNKGDRNTSFFHASCSERRRRNRINKLRREDGSWVEREEDKRAMIIEFFK 650

Query: 196 EMFTSDQPERDDQILDLFQSIVSDRENDILTSIPDKEAI 312
           ++FTS+  +   ++LD+    VS   N+ L +   +E +
Sbjct: 651 QLFTSNGGQNSQKLLDVVDRKVSGAMNESLRAEFTREEV 689


>gb|EEC69280.1| hypothetical protein OsI_38331 [Oryza sativa Indica Group]
          Length = 320

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 27/99 (27%), Positives = 50/99 (50%)
 Frame = +1

Query: 16  FWKQKSSTDWIKDGGRNTKFYHISTIYXXXXXXXXXXXXEEGNWKEGRAEVGHSLNQYFS 195
           +WKQ++ T+W+  G RNT F+H S               E+G+W E   +    + ++F 
Sbjct: 137 YWKQRAHTNWLNKGDRNTSFFHASCSERRRRNRINKLRREDGSWVEREEDKRAMIIEFFK 196

Query: 196 EMFTSDQPERDDQILDLFQSIVSDRENDILTSIPDKEAI 312
           ++FTS+  +   ++LD+    VS   N+ L +   +E +
Sbjct: 197 QLFTSNGGQNSQKLLDVVDRKVSGAMNESLRAEFTREEV 235