BLASTX nr result
ID: Coptis25_contig00004872
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00004872
(1737 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABK95002.1| unknown [Populus trichocarpa] 869 0.0
ref|XP_002266390.1| PREDICTED: methylmalonate-semialdehyde dehyd... 868 0.0
ref|XP_002518343.1| methylmalonate-semialdehyde dehydrogenase, p... 863 0.0
ref|XP_002313217.1| predicted protein [Populus trichocarpa] gi|2... 863 0.0
ref|XP_002300008.1| predicted protein [Populus trichocarpa] gi|2... 851 0.0
>gb|ABK95002.1| unknown [Populus trichocarpa]
Length = 542
Score = 869 bits (2245), Expect = 0.0
Identities = 429/513 (83%), Positives = 469/513 (91%), Gaps = 1/513 (0%)
Frame = -2
Query: 1727 HFSTATNVSPTPQTSPVRLRNLIGGEFVESDSKETIDVLNPATQEVVLQIPLTTTEEFKS 1548
+FST + SP R+ NLIGG+FV+S S TIDV+NPATQEVV QIPLTT EEFK+
Sbjct: 29 YFSTGVVEPSSSLRSPPRVPNLIGGKFVDSQSSSTIDVINPATQEVVSQIPLTTNEEFKA 88
Query: 1547 AVSSAKHAFTSWRNTPITTRQRVMFKLQELIRRDIDKLALNITTEQGKTLKDAHGDVFRG 1368
AVS+AKHAF +WRNTPITTRQRVM KLQELIRRD DKLA+NITTEQGKTLKDAHGDVFRG
Sbjct: 89 AVSAAKHAFPAWRNTPITTRQRVMLKLQELIRRDTDKLAMNITTEQGKTLKDAHGDVFRG 148
Query: 1367 LEVVEHACGMGTLQMGEFVSNVSHGIDTYSLREPLGVCAGICPFNFPAMIPLWMFPIAVT 1188
LEVVEHACGM TLQMGE+V NV++GIDT+S+REPLGVCAGICPFNFPAMIPLWMFP+AVT
Sbjct: 149 LEVVEHACGMATLQMGEYVPNVANGIDTFSIREPLGVCAGICPFNFPAMIPLWMFPVAVT 208
Query: 1187 CGNTFVLKPSEKDPGASMILAELAMEAGLPNGVLNIVHGTNEIVNNICDDKDIRAISFVG 1008
CGNTFVLKPSEKDPGAS+ILAELAMEAGLPNGVLNIVHGTN+IVN ICDD DIRAISFVG
Sbjct: 209 CGNTFVLKPSEKDPGASIILAELAMEAGLPNGVLNIVHGTNDIVNAICDDDDIRAISFVG 268
Query: 1007 SNTAGMHIYSRAAAKGKRVQANMGAKNHAIIVPDANIDATLNALVAAGFGAAGQRCMALS 828
SNTAGMHIYSRA+AKGKRVQ+NMGAKNHAI++PDAN DATLNALVAAGFGAAGQRCMALS
Sbjct: 269 SNTAGMHIYSRASAKGKRVQSNMGAKNHAIVLPDANTDATLNALVAAGFGAAGQRCMALS 328
Query: 827 TAVFVGDSKPWVDGLIEHAKALKVNAGCEPGADLGPVISKQAKDRICRLVQSGVESGASL 648
T VFVGDS+ W + L+E AK+LKVNAG EP ADLGPVISKQAK+R+C+L++SGVESGA L
Sbjct: 329 TVVFVGDSQSWENKLVECAKSLKVNAGTEPDADLGPVISKQAKERVCKLIESGVESGARL 388
Query: 647 DLDGRNIVVPGYEDGNFVGPTILSNVTSDMDCYKEEIFGPVLLCMQADSLEEAIDIVNKN 468
LDGRNIVVPGYEDGNF+GPTILS VT+DMDCYKEEIFGPVLLC +ADS EEAI VN+N
Sbjct: 389 LLDGRNIVVPGYEDGNFIGPTILSGVTADMDCYKEEIFGPVLLCKEADSFEEAIHFVNRN 448
Query: 467 EYGNGASIFTSSGVAARKFQNEIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKA 288
+YGNGA+IFT+SG AARKFQ EIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKA
Sbjct: 449 KYGNGAAIFTTSGAAARKFQTEIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKA 508
Query: 287 GVQFFTQIKTVTQQWKDLP-VQGVSLAMPTSQK 192
GV F+TQIKT+TQQWKDLP GVSLAMPTSQK
Sbjct: 509 GVNFYTQIKTITQQWKDLPGGSGVSLAMPTSQK 541
>ref|XP_002266390.1| PREDICTED: methylmalonate-semialdehyde dehydrogenase [acylating],
mitochondrial [Vitis vinifera]
gi|296085606|emb|CBI29381.3| unnamed protein product
[Vitis vinifera]
Length = 539
Score = 868 bits (2244), Expect = 0.0
Identities = 431/515 (83%), Positives = 476/515 (92%), Gaps = 1/515 (0%)
Frame = -2
Query: 1730 SHFSTATNVSPTPQTSPVRLRNLIGGEFVESDSKETIDVLNPATQEVVLQIPLTTTEEFK 1551
S FSTAT S + Q +P R+ NLIGG FV+S S E IDV+NPATQ+VV QIPLT+ EEFK
Sbjct: 25 SRFSTATEPS-SKQRNPPRVPNLIGGSFVDSQSSEFIDVINPATQQVVSQIPLTSNEEFK 83
Query: 1550 SAVSSAKHAFTSWRNTPITTRQRVMFKLQELIRRDIDKLALNITTEQGKTLKDAHGDVFR 1371
+AVS+AK AF +WRNTP+TTRQR+MFKLQ+LIRRDIDKLA+NITTEQGKTLKDAHGDVFR
Sbjct: 84 AAVSAAKQAFPAWRNTPVTTRQRIMFKLQQLIRRDIDKLAMNITTEQGKTLKDAHGDVFR 143
Query: 1370 GLEVVEHACGMGTLQMGEFVSNVSHGIDTYSLREPLGVCAGICPFNFPAMIPLWMFPIAV 1191
GLEVVEHACGM TLQMGEFV NVS GIDTYS+REPLGVCAGICPFNFPAMIPLWMFPIAV
Sbjct: 144 GLEVVEHACGMATLQMGEFVPNVSSGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPIAV 203
Query: 1190 TCGNTFVLKPSEKDPGASMILAELAMEAGLPNGVLNIVHGTNEIVNNICDDKDIRAISFV 1011
TCGNTFVLKPSEKDPGAS++LAELAMEAGLP+GVLNIVHGT IVN ICDD+DIRA+SFV
Sbjct: 204 TCGNTFVLKPSEKDPGASLMLAELAMEAGLPDGVLNIVHGTRNIVNAICDDEDIRAVSFV 263
Query: 1010 GSNTAGMHIYSRAAAKGKRVQANMGAKNHAIIVPDANIDATLNALVAAGFGAAGQRCMAL 831
GSNTAGMHIYSRA+AKGKRVQ+NMGAKNHAI++PDA++DATLNALVAAGFGAAGQRCMAL
Sbjct: 264 GSNTAGMHIYSRASAKGKRVQSNMGAKNHAIVLPDASLDATLNALVAAGFGAAGQRCMAL 323
Query: 830 STAVFVGDSKPWVDGLIEHAKALKVNAGCEPGADLGPVISKQAKDRICRLVQSGVESGAS 651
ST VFVGDSK W D L+E AKALKVN+G EP ADLGPVISK+AK+RIC+L+Q+GV+SGA
Sbjct: 324 STVVFVGDSKSWEDKLLERAKALKVNSGTEPDADLGPVISKEAKERICKLIQNGVDSGAR 383
Query: 650 LDLDGRNIVVPGYEDGNFVGPTILSNVTSDMDCYKEEIFGPVLLCMQADSLEEAIDIVNK 471
L LDGRNIVVPGYE GNF+GPTILS+VT+DM+CYKEEIFGPVLLC+QADSL+EAI+IVN+
Sbjct: 384 LVLDGRNIVVPGYEHGNFIGPTILSDVTADMECYKEEIFGPVLLCIQADSLDEAINIVNR 443
Query: 470 NEYGNGASIFTSSGVAARKFQNEIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGK 291
N+YGNGASIFTSSGV ARKFQ EIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGK
Sbjct: 444 NKYGNGASIFTSSGVDARKFQTEIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGK 503
Query: 290 AGVQFFTQIKTVTQQWKDLPV-QGVSLAMPTSQKT 189
AGVQF+TQIKTVTQQWK L GVSLAMPTSQK+
Sbjct: 504 AGVQFYTQIKTVTQQWKGLASGSGVSLAMPTSQKS 538
>ref|XP_002518343.1| methylmalonate-semialdehyde dehydrogenase, putative [Ricinus
communis] gi|223542563|gb|EEF44103.1|
methylmalonate-semialdehyde dehydrogenase, putative
[Ricinus communis]
Length = 541
Score = 863 bits (2229), Expect = 0.0
Identities = 428/515 (83%), Positives = 467/515 (90%), Gaps = 1/515 (0%)
Frame = -2
Query: 1733 TSHFSTATNVSPTPQTSPVRLRNLIGGEFVESDSKETIDVLNPATQEVVLQIPLTTTEEF 1554
+S FSTA S T +R+ NLIGG FV+S S IDV+NPATQE+V +PLTT EEF
Sbjct: 26 SSDFSTAAQPSSTSHRKSLRVPNLIGGTFVDSKSSSAIDVINPATQEIVSHVPLTTNEEF 85
Query: 1553 KSAVSSAKHAFTSWRNTPITTRQRVMFKLQELIRRDIDKLALNITTEQGKTLKDAHGDVF 1374
K+AVS+AK AF SWRNTPITTRQR+M KLQELIRRDIDKLA+NIT EQGKTLKDAHGDVF
Sbjct: 86 KAAVSAAKLAFPSWRNTPITTRQRIMLKLQELIRRDIDKLAVNITCEQGKTLKDAHGDVF 145
Query: 1373 RGLEVVEHACGMGTLQMGEFVSNVSHGIDTYSLREPLGVCAGICPFNFPAMIPLWMFPIA 1194
RGLEVVEHACGM TLQMGE+V NVS+GIDTYS+REPLGVCAGICPFNFPAMIPLWMFP+A
Sbjct: 146 RGLEVVEHACGMATLQMGEYVPNVSNGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPVA 205
Query: 1193 VTCGNTFVLKPSEKDPGASMILAELAMEAGLPNGVLNIVHGTNEIVNNICDDKDIRAISF 1014
VTCGNTFVLKPSEKDPGAS+ILAELAMEAGLP+GVLNIVHGTN+IVN ICDD DIRAISF
Sbjct: 206 VTCGNTFVLKPSEKDPGASIILAELAMEAGLPDGVLNIVHGTNDIVNAICDDDDIRAISF 265
Query: 1013 VGSNTAGMHIYSRAAAKGKRVQANMGAKNHAIIVPDANIDATLNALVAAGFGAAGQRCMA 834
VGSNTAGMHIY RA+AKGKRVQ+NMGAKNH I++PDAN+DATLNALVAAGFGAAGQRCMA
Sbjct: 266 VGSNTAGMHIYGRASAKGKRVQSNMGAKNHGIVLPDANMDATLNALVAAGFGAAGQRCMA 325
Query: 833 LSTAVFVGDSKPWVDGLIEHAKALKVNAGCEPGADLGPVISKQAKDRICRLVQSGVESGA 654
LST VFVGDS+ W + L+E AKALKVNAG EP ADLGPVISKQAK+R+ RL+QSGVESGA
Sbjct: 326 LSTVVFVGDSQSWENKLVERAKALKVNAGTEPDADLGPVISKQAKERVHRLIQSGVESGA 385
Query: 653 SLDLDGRNIVVPGYEDGNFVGPTILSNVTSDMDCYKEEIFGPVLLCMQADSLEEAIDIVN 474
L LDGRNIVVPGYE GNF+GPTILS VT+DM+CYKEEIFGPVLLCMQADS EEAI+IVN
Sbjct: 386 KLLLDGRNIVVPGYELGNFIGPTILSGVTADMECYKEEIFGPVLLCMQADSFEEAINIVN 445
Query: 473 KNEYGNGASIFTSSGVAARKFQNEIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYG 294
+N+YGNGA+IFT+SG AARKFQ EIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYG
Sbjct: 446 RNKYGNGAAIFTTSGAAARKFQTEIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYG 505
Query: 293 KAGVQFFTQIKTVTQQWKDLPV-QGVSLAMPTSQK 192
KAGV F+TQIKT+TQQWKDLP GVSLAMPTSQK
Sbjct: 506 KAGVNFYTQIKTITQQWKDLPSGSGVSLAMPTSQK 540
>ref|XP_002313217.1| predicted protein [Populus trichocarpa] gi|222849625|gb|EEE87172.1|
predicted protein [Populus trichocarpa]
Length = 496
Score = 863 bits (2229), Expect = 0.0
Identities = 424/496 (85%), Positives = 462/496 (93%), Gaps = 1/496 (0%)
Frame = -2
Query: 1676 RLRNLIGGEFVESDSKETIDVLNPATQEVVLQIPLTTTEEFKSAVSSAKHAFTSWRNTPI 1497
R+ NLIGG+FV+S S TIDV+NPATQEVV QIPLTT EEFK+AVS+AKHAF +WRNTPI
Sbjct: 1 RVPNLIGGKFVDSQSSSTIDVINPATQEVVSQIPLTTNEEFKAAVSAAKHAFPAWRNTPI 60
Query: 1496 TTRQRVMFKLQELIRRDIDKLALNITTEQGKTLKDAHGDVFRGLEVVEHACGMGTLQMGE 1317
TTRQRVM KLQELIRRD DKLA+NITTEQGKTLKDAHGDVFRGLEVVEHACGM TLQMGE
Sbjct: 61 TTRQRVMLKLQELIRRDTDKLAMNITTEQGKTLKDAHGDVFRGLEVVEHACGMATLQMGE 120
Query: 1316 FVSNVSHGIDTYSLREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPSEKDPGAS 1137
+V NV++GIDT+S+REPLGVCAGICPFNFPAMIPLWMFP+AVTCGNTFVLKPSEKDPGAS
Sbjct: 121 YVPNVANGIDTFSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFVLKPSEKDPGAS 180
Query: 1136 MILAELAMEAGLPNGVLNIVHGTNEIVNNICDDKDIRAISFVGSNTAGMHIYSRAAAKGK 957
+ILAELAMEAGLPNGVLNIVHGTN+IVN ICDD DIRAISFVGSNTAGMHIYSRA+AKGK
Sbjct: 181 IILAELAMEAGLPNGVLNIVHGTNDIVNAICDDDDIRAISFVGSNTAGMHIYSRASAKGK 240
Query: 956 RVQANMGAKNHAIIVPDANIDATLNALVAAGFGAAGQRCMALSTAVFVGDSKPWVDGLIE 777
RVQ+NMGAKNHAI++PDAN DATLNALVAAGFGAAGQRCMALST VFVGDS+ W + L+E
Sbjct: 241 RVQSNMGAKNHAIVLPDANTDATLNALVAAGFGAAGQRCMALSTVVFVGDSQSWENKLVE 300
Query: 776 HAKALKVNAGCEPGADLGPVISKQAKDRICRLVQSGVESGASLDLDGRNIVVPGYEDGNF 597
AK+LKVNAG EP ADLGPVISKQAK+R+C+L++SGVESGA L LDGRNIVVPGYEDGNF
Sbjct: 301 CAKSLKVNAGTEPDADLGPVISKQAKERVCKLIESGVESGARLLLDGRNIVVPGYEDGNF 360
Query: 596 VGPTILSNVTSDMDCYKEEIFGPVLLCMQADSLEEAIDIVNKNEYGNGASIFTSSGVAAR 417
+GPTILS VT+DMDCYKEEIFGPVLLC +ADS EEAI VN+N+YGNGA+IFT+SG AAR
Sbjct: 361 IGPTILSGVTADMDCYKEEIFGPVLLCKEADSFEEAIHFVNRNKYGNGAAIFTTSGAAAR 420
Query: 416 KFQNEIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVQFFTQIKTVTQQWKD 237
KFQ EIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGV F+TQIKT+TQQWKD
Sbjct: 421 KFQTEIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVNFYTQIKTITQQWKD 480
Query: 236 LP-VQGVSLAMPTSQK 192
LP GVSLAMPTSQK
Sbjct: 481 LPGGSGVSLAMPTSQK 496
>ref|XP_002300008.1| predicted protein [Populus trichocarpa] gi|222847266|gb|EEE84813.1|
predicted protein [Populus trichocarpa]
Length = 497
Score = 851 bits (2198), Expect = 0.0
Identities = 414/496 (83%), Positives = 461/496 (92%), Gaps = 1/496 (0%)
Frame = -2
Query: 1676 RLRNLIGGEFVESDSKETIDVLNPATQEVVLQIPLTTTEEFKSAVSSAKHAFTSWRNTPI 1497
R+ NLIGG+FV+S S TIDV+NPATQE V ++P TT EEF++AVS+AK AF +WRNTPI
Sbjct: 1 RVPNLIGGKFVDSQSSSTIDVINPATQEAVSRVPFTTNEEFRAAVSAAKQAFPAWRNTPI 60
Query: 1496 TTRQRVMFKLQELIRRDIDKLALNITTEQGKTLKDAHGDVFRGLEVVEHACGMGTLQMGE 1317
TTRQRVM KLQELIRRDIDKLA+NITTEQGKTLKDAHGDVFRGLEVVEHACGM TLQMGE
Sbjct: 61 TTRQRVMLKLQELIRRDIDKLAMNITTEQGKTLKDAHGDVFRGLEVVEHACGMATLQMGE 120
Query: 1316 FVSNVSHGIDTYSLREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPSEKDPGAS 1137
+V NVS+GIDT+S+REPLGVCAGICPFNFPAMIPLWMFP+AVTCGNTF+LKPSEKDPGAS
Sbjct: 121 YVPNVSNGIDTFSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFILKPSEKDPGAS 180
Query: 1136 MILAELAMEAGLPNGVLNIVHGTNEIVNNICDDKDIRAISFVGSNTAGMHIYSRAAAKGK 957
+ILAELAMEAGLP+GVLNIVHGTN++VN ICDD DIRAISFVGSNTAGMHIYSRA+AKGK
Sbjct: 181 IILAELAMEAGLPDGVLNIVHGTNDVVNAICDDDDIRAISFVGSNTAGMHIYSRASAKGK 240
Query: 956 RVQANMGAKNHAIIVPDANIDATLNALVAAGFGAAGQRCMALSTAVFVGDSKPWVDGLIE 777
RVQ+NMGAKNHAI++PDAN+DATLNALVAAGFGAAGQRCMALST VFVGD + W + L+E
Sbjct: 241 RVQSNMGAKNHAIVLPDANVDATLNALVAAGFGAAGQRCMALSTVVFVGDPQSWENKLVE 300
Query: 776 HAKALKVNAGCEPGADLGPVISKQAKDRICRLVQSGVESGASLDLDGRNIVVPGYEDGNF 597
AK+LKVN+G EP ADLGPVISKQAK+R+CRL+QSGVESGA L LDGRNIVVPG+E GNF
Sbjct: 301 RAKSLKVNSGMEPDADLGPVISKQAKERVCRLIQSGVESGARLLLDGRNIVVPGFEHGNF 360
Query: 596 VGPTILSNVTSDMDCYKEEIFGPVLLCMQADSLEEAIDIVNKNEYGNGASIFTSSGVAAR 417
+GPTILS VT+DM+CYKEEIFGPVLLCM+A S EEAI+I+N+N+YGNGA+IFT+SG AAR
Sbjct: 361 IGPTILSGVTADMECYKEEIFGPVLLCMEAGSFEEAINILNRNKYGNGAAIFTASGAAAR 420
Query: 416 KFQNEIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVQFFTQIKTVTQQWKD 237
KFQ EIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGV F+TQIKT+TQQWKD
Sbjct: 421 KFQTEIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVNFYTQIKTITQQWKD 480
Query: 236 LP-VQGVSLAMPTSQK 192
LP GVSLAMPTSQK
Sbjct: 481 LPGGSGVSLAMPTSQK 496