BLASTX nr result

ID: Coptis25_contig00004758 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004758
         (2160 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EAW92202.1| hCG1809684 [Homo sapiens]                               60   2e-06

>gb|EAW92202.1| hCG1809684 [Homo sapiens]
          Length = 712

 Score = 60.1 bits (144), Expect = 2e-06
 Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 12/150 (8%)
 Frame = -2

Query: 2033 GKTCEPLE--PLCQSASYDVESTLLPGKTCDSLELPSQNASYCE--NSTLILGKTCKPLE 1866
            G +C+ L   P+  S+ + + S+  PG  CD L       S C+  +S+LI G +C  L 
Sbjct: 256  GSSCDMLSSSPIPGSSCHLLSSSPNPGSYCDLLSSSPNPGSSCDLLSSSLIPGSSCDLLS 315

Query: 1865 LSSQNASSDE--NSTLIPGKTCKSLELSNQNESSDE--NSTLIPGNACESYRSKKR--KT 1704
             S    SS +  +S+LIPG +C  L  S    SS +  +S+LIPG++C+   S      +
Sbjct: 316  SSPNPGSSCDLLSSSLIPGSSCDLLSSSPNPGSSCDLLSSSLIPGSSCDLLSSSPNPGSS 375

Query: 1703 CE-SLELPNQIASYN-ENSTPIPGKTCESL 1620
            C+     PN  +S +  +S+P PG +C++L
Sbjct: 376  CDLRSSSPNPGSSCDLRSSSPNPGSSCDTL 405



 Score = 58.5 bits (140), Expect = 7e-06
 Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 12/176 (6%)
 Frame = -2

Query: 2111 LPGNTRELLEPPCQSVAYDD--KSALLAGKTCEPLEPLCQSASYDVESTLLPGKTCDSLE 1938
            +PG++  LL       +Y D   S+   G +C+ L            S+L+PG +CD L 
Sbjct: 267  IPGSSCHLLSSSPNPGSYCDLLSSSPNPGSSCDLLS-----------SSLIPGSSCDLLS 315

Query: 1937 LPSQNASYCE--NSTLILGKTCKPLELSSQNASSDE--NSTLIPGKTCKSLELS-NQNES 1773
                  S C+  +S+LI G +C  L  S    SS +  +S+LIPG +C  L  S N   S
Sbjct: 316  SSPNPGSSCDLLSSSLIPGSSCDLLSSSPNPGSSCDLLSSSLIPGSSCDLLSSSPNPGSS 375

Query: 1772 SD-ENSTLIPGNACESYRSKKR--KTCESL-ELPNQIASYN-ENSTPIPGKTCESL 1620
             D  +S+  PG++C+   S      +C++L   PN  +S +  +S+P PG +C+ L
Sbjct: 376  CDLRSSSPNPGSSCDLRSSSPNPGSSCDTLSSSPNPGSSCDLLSSSPNPGSSCDLL 431


Top