BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004229
         (1732 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269323.1| PREDICTED: tubby-like F-box protein 3-like [...   643   0.0  
gb|ADL36841.1| TLP domain class transcription factor [Malus x do...   597   e-168
ref|NP_850481.1| Tubby-like F-box protein 3 [Arabidopsis thalian...   594   e-167
ref|NP_001189775.1| Tubby-like F-box protein 3 [Arabidopsis thal...   593   e-167
ref|XP_002882136.1| hypothetical protein ARALYDRAFT_322431 [Arab...   588   e-165

>ref|XP_002269323.1| PREDICTED: tubby-like F-box protein 3-like [Vitis vinifera]
          Length = 405

 Score =  643 bits (1659), Expect = 0.0
 Identities = 317/409 (77%), Positives = 361/409 (88%), Gaps = 2/409 (0%)
 Frame = +1

Query: 175  MSFKSMIQDMKGEIGNISRKGFEVKLSYGLKSKSHNNNRLVQEDVEVL-MMKQSCWANLP 351
            MSFKS+IQDM+GE G+ISRKGFEVK +YGL+S+SH   R+VQ+   V+  ++QSCWAN+P
Sbjct: 1    MSFKSIIQDMRGEFGSISRKGFEVKFNYGLRSRSH---RVVQDSSMVVDALRQSCWANMP 57

Query: 352  PELLREVLVRIEASESMWPPRKCVAACAGVCRSWREIMKEIVKVPELSGKLTFPISLKQP 531
            PELLR+VL+RIEASES WPPRK V ACAGVCRSWREI KEIVK PELSGKLTFPISLKQP
Sbjct: 58   PELLRDVLMRIEASESTWPPRKNVVACAGVCRSWREITKEIVKTPELSGKLTFPISLKQP 117

Query: 532  GPRDSIIQCFIKRNRAAQTYHLYLGLTQALTDNGKLLLAARKCRRTTCTDYIISLDTDDM 711
            GPR S++QC+IKRNR+ QTYHLYLGL QA TD+GK LLAARKCRR TCTDYIISL+ DD+
Sbjct: 118  GPRGSLLQCYIKRNRSNQTYHLYLGLNQASTDDGKFLLAARKCRRPTCTDYIISLNADDV 177

Query: 712  SKGSMTYIGKLRSNFLGTKFVIYDSQPPHAGATVAKSRSSRLVGLKQVSPRVPAGNYPVA 891
            SKGS TYIGKLRSNFLGTKF +YD+QPP+AGA ++KSRS+R +G +QVSPRVPAGNYPVA
Sbjct: 178  SKGSTTYIGKLRSNFLGTKFTVYDAQPPNAGARISKSRSTRRLGSRQVSPRVPAGNYPVA 237

Query: 892  QITYELNVLGSRGPRRMQCTMNAIPASAIEAEGMAPTQMEFLPNNLDSLPSVPFFRSKST 1071
             I+YELNVLGSRGPRRMQC M+AIPA+AIE  G+APTQ EF+ +N+DS PS PFFRSKS 
Sbjct: 238  HISYELNVLGSRGPRRMQCVMDAIPANAIEPGGVAPTQTEFVLSNVDSFPSFPFFRSKSN 297

Query: 1072 RVENLPSGPVAGHKG-ALVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVATPENGA 1248
            R E+L SGP++G K   LVLKNK+PRWHEQLQCWCLNF GRVTVASVKNFQLVA+ ENG 
Sbjct: 298  RTESLHSGPLSGPKDEMLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASAENGV 357

Query: 1249 QIGQEHEKVILQFGKIGKDLFTMDFQYPISAFQAFAICLSSFDTKIACE 1395
              GQEHE VILQFGK+GKD+FTMD+QYPISAFQAFAICLSSFDTKIACE
Sbjct: 358  -AGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 405


>gb|ADL36841.1| TLP domain class transcription factor [Malus x domestica]
          Length = 401

 Score =  597 bits (1540), Expect = e-168
 Identities = 295/409 (72%), Positives = 352/409 (86%), Gaps = 2/409 (0%)
 Frame = +1

Query: 175  MSFKSMIQDMKGEIGNISRKGFEVKLSYGLKSKSHNNNRLVQE-DVEVLMMKQSCWANLP 351
            MSFKSMIQDMKGE+G+ISRK F+VK  +G++S+S    R+VQ+    V  +KQSCWAN+P
Sbjct: 1    MSFKSMIQDMKGELGSISRKSFDVK--FGMRSRSQ---RVVQDTSFRVDALKQSCWANMP 55

Query: 352  PELLREVLVRIEASESMWPPRKCVAACAGVCRSWREIMKEIVKVPELSGKLTFPISLKQP 531
            PELLR+VL+RIEAS+  WPPRK V  CAGVCR+WREIMKEIVK PE+SGKLTFPISLKQP
Sbjct: 56   PELLRDVLMRIEASDDTWPPRKNVVCCAGVCRNWREIMKEIVKSPEVSGKLTFPISLKQP 115

Query: 532  GPRDSIIQCFIKRNRAAQTYHLYLGLTQALTDNGKLLLAARKCRRTTCTDYIISLDTDDM 711
            GPR+S++QC+IKR+R+ QTY+L+LGL+QA TD+GK LLAA+KCRR TCTDYIISL+ + +
Sbjct: 116  GPRNSLLQCYIKRSRSNQTYYLFLGLSQASTDDGKFLLAAKKCRRPTCTDYIISLNAEVV 175

Query: 712  SKGSMTYIGKLRSNFLGTKFVIYDSQPPHAGATVAKSRSSRLVGLKQVSPRVPAGNYPVA 891
            SKG+  ++GKLRSNFLGTKF IYD+QP ++GA V K RS+RLV   +VSPRVPAGNYPVA
Sbjct: 176  SKGNSAFVGKLRSNFLGTKFTIYDAQPTNSGAKVTKCRSTRLV--NKVSPRVPAGNYPVA 233

Query: 892  QITYELNVLGSRGPRRMQCTMNAIPASAIEAEGMAPTQMEFLPNNLDSLPSVPFFRSKST 1071
             I YELNV+G+RGPRRMQC M++IPA A+E  G+APTQ EF+ +N DS PSVPFFRSKST
Sbjct: 234  HIAYELNVMGARGPRRMQCVMDSIPARAVEPGGVAPTQTEFMHSNTDSFPSVPFFRSKST 293

Query: 1072 RVENLPSGPVAG-HKGALVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVATPENGA 1248
            R EN PS   +G ++G LVL+NK+PRWHEQLQCWCLNF GRVTVASVKNFQLV++PENG 
Sbjct: 294  RTENFPSPLESGENEGMLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVSSPENGV 353

Query: 1249 QIGQEHEKVILQFGKIGKDLFTMDFQYPISAFQAFAICLSSFDTKIACE 1395
              GQEHE VILQFGK+GKD+FTMD++YPISAFQAFAICLSSFDTKIACE
Sbjct: 354  -AGQEHENVILQFGKVGKDVFTMDYRYPISAFQAFAICLSSFDTKIACE 401


>ref|NP_850481.1| Tubby-like F-box protein 3 [Arabidopsis thaliana]
            gi|79324947|ref|NP_001031558.1| Tubby-like F-box protein
            3 [Arabidopsis thaliana]
            gi|75248467|sp|Q8VY21.1|TLP3_ARATH RecName:
            Full=Tubby-like F-box protein 3; Short=AtTLP3
            gi|18377640|gb|AAL66970.1| putative tubby protein
            [Arabidopsis thaliana] gi|20465543|gb|AAM20254.1|
            putative tubby protein [Arabidopsis thaliana]
            gi|27372514|gb|AAK98802.1| tubby-like protein 3
            [Arabidopsis thaliana] gi|330255813|gb|AEC10907.1|
            Tubby-like F-box protein 3 [Arabidopsis thaliana]
            gi|330255814|gb|AEC10908.1| Tubby-like F-box protein 3
            [Arabidopsis thaliana]
          Length = 406

 Score =  594 bits (1531), Expect = e-167
 Identities = 297/411 (72%), Positives = 346/411 (84%), Gaps = 4/411 (0%)
 Frame = +1

Query: 175  MSFKSMIQDMKGEIGNISRKGFEVKLSYGLKSKSHNNNRLVQE-DVEVLMMKQSCWANLP 351
            MSFKS+IQDM+GE+G+ISRKGF+V+  YG +S+S    R+VQ+  V V   KQSCWA++P
Sbjct: 1    MSFKSLIQDMRGELGSISRKGFDVRFGYG-RSRSQ---RVVQDTSVPVDAFKQSCWASMP 56

Query: 352  PELLREVLVRIEASESMWPPRKCVAACAGVCRSWREIMKEIVKVPELSGKLTFPISLKQP 531
            PELLR+VL+RIE SE  WP RK V +CAGVCR+WREI+KEIV+VPELS KLTFPISLKQP
Sbjct: 57   PELLRDVLMRIEQSEDTWPSRKNVVSCAGVCRNWREIVKEIVRVPELSSKLTFPISLKQP 116

Query: 532  GPRDSIIQCFIKRNRAAQTYHLYLGLTQALT-DNGKLLLAARKCRRTTCTDYIISLDTDD 708
            GPR S++QC+I RNR+ QTY+LYLGL QA + D+GK LLAA++ RR TCTDYIISL+ DD
Sbjct: 117  GPRGSLVQCYIMRNRSNQTYYLYLGLNQAASNDDGKFLLAAKRFRRPTCTDYIISLNCDD 176

Query: 709  MSKGSMTYIGKLRSNFLGTKFVIYDSQPPHAGATVAKSRSSRLVGLKQVSPRVPAGNYPV 888
            +S+GS TYIGKLRSNFLGTKF +YD+QP + G  V ++RSSRL+ LKQVSPR+P+GNYPV
Sbjct: 177  VSRGSNTYIGKLRSNFLGTKFTVYDAQPTNPGTQVTRTRSSRLLSLKQVSPRIPSGNYPV 236

Query: 889  AQITYELNVLGSRGPRRMQCTMNAIPASAIEAEGMAPTQMEFLPNNLDSLPSVPFFRSKS 1068
            A I+YELNVLGSRGPRRMQC M+AIPASA+E  G APTQ E + +NLDS PS  FFRSKS
Sbjct: 237  AHISYELNVLGSRGPRRMQCVMDAIPASAVEPGGTAPTQTELVHSNLDSFPSFSFFRSKS 296

Query: 1069 TRVENLPSGP--VAGHKGALVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVATPEN 1242
             R E+LPSGP   A  +G LVLKNK+PRWHEQLQCWCLNF GRVTVASVKNFQLVA PEN
Sbjct: 297  IRAESLPSGPSSAAQKEGLLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAAPEN 356

Query: 1243 GAQIGQEHEKVILQFGKIGKDLFTMDFQYPISAFQAFAICLSSFDTKIACE 1395
            G   G EHE VILQFGK+GKD+FTMD+QYPISAFQAF ICLSSFDTKIACE
Sbjct: 357  G-PAGPEHENVILQFGKVGKDVFTMDYQYPISAFQAFTICLSSFDTKIACE 406


>ref|NP_001189775.1| Tubby-like F-box protein 3 [Arabidopsis thaliana]
            gi|3738302|gb|AAC63644.1| putative tubby protein
            [Arabidopsis thaliana] gi|20197552|gb|AAM15124.1|
            putative tubby protein [Arabidopsis thaliana]
            gi|227204449|dbj|BAH57076.1| AT2G47900 [Arabidopsis
            thaliana] gi|330255815|gb|AEC10909.1| Tubby-like F-box
            protein 3 [Arabidopsis thaliana]
          Length = 407

 Score =  593 bits (1529), Expect = e-167
 Identities = 297/412 (72%), Positives = 345/412 (83%), Gaps = 5/412 (1%)
 Frame = +1

Query: 175  MSFKSMIQDMKGEIGNISRKGFEVKLSYGLKSKSHNNNRLVQE-DVEVLMMKQSCWANLP 351
            MSFKS+IQDM+GE+G+ISRKGF+V+  YG +S+S    R+VQ+  V V   KQSCWA++P
Sbjct: 1    MSFKSLIQDMRGELGSISRKGFDVRFGYG-RSRSQ---RVVQDTSVPVDAFKQSCWASMP 56

Query: 352  PELLREVLVRIEASESMWPPRKCVAACAGVCRSWREIMKEIVKVPELSGKLTFPISLKQP 531
            PELLR+VL+RIE SE  WP RK V +CAGVCR+WREI+KEIV+VPELS KLTFPISLKQP
Sbjct: 57   PELLRDVLMRIEQSEDTWPSRKNVVSCAGVCRNWREIVKEIVRVPELSSKLTFPISLKQP 116

Query: 532  GPRDSIIQCFIKRNRAAQTYHLYLGLTQALT--DNGKLLLAARKCRRTTCTDYIISLDTD 705
            GPR S++QC+I RNR+ QTY+LYLGL QA    D+GK LLAA++ RR TCTDYIISL+ D
Sbjct: 117  GPRGSLVQCYIMRNRSNQTYYLYLGLNQAAASNDDGKFLLAAKRFRRPTCTDYIISLNCD 176

Query: 706  DMSKGSMTYIGKLRSNFLGTKFVIYDSQPPHAGATVAKSRSSRLVGLKQVSPRVPAGNYP 885
            D+S+GS TYIGKLRSNFLGTKF +YD+QP + G  V ++RSSRL+ LKQVSPR+P+GNYP
Sbjct: 177  DVSRGSNTYIGKLRSNFLGTKFTVYDAQPTNPGTQVTRTRSSRLLSLKQVSPRIPSGNYP 236

Query: 886  VAQITYELNVLGSRGPRRMQCTMNAIPASAIEAEGMAPTQMEFLPNNLDSLPSVPFFRSK 1065
            VA I+YELNVLGSRGPRRMQC M+AIPASA+E  G APTQ E + +NLDS PS  FFRSK
Sbjct: 237  VAHISYELNVLGSRGPRRMQCVMDAIPASAVEPGGTAPTQTELVHSNLDSFPSFSFFRSK 296

Query: 1066 STRVENLPSGP--VAGHKGALVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVATPE 1239
            S R E+LPSGP   A  +G LVLKNK+PRWHEQLQCWCLNF GRVTVASVKNFQLVA PE
Sbjct: 297  SIRAESLPSGPSSAAQKEGLLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAAPE 356

Query: 1240 NGAQIGQEHEKVILQFGKIGKDLFTMDFQYPISAFQAFAICLSSFDTKIACE 1395
            NG   G EHE VILQFGK+GKD+FTMD+QYPISAFQAF ICLSSFDTKIACE
Sbjct: 357  NG-PAGPEHENVILQFGKVGKDVFTMDYQYPISAFQAFTICLSSFDTKIACE 407


>ref|XP_002882136.1| hypothetical protein ARALYDRAFT_322431 [Arabidopsis lyrata subsp.
            lyrata] gi|297327975|gb|EFH58395.1| hypothetical protein
            ARALYDRAFT_322431 [Arabidopsis lyrata subsp. lyrata]
          Length = 407

 Score =  588 bits (1516), Expect = e-165
 Identities = 294/412 (71%), Positives = 344/412 (83%), Gaps = 5/412 (1%)
 Frame = +1

Query: 175  MSFKSMIQDMKGEIGNISRKGFEVKLSYGLKSKSHNNNRLVQE-DVEVLMMKQSCWANLP 351
            MSFKS+IQDM+GE+G+ISRKGF+V+  YG +S+S    R+VQ+  V V   KQSCWAN+P
Sbjct: 1    MSFKSLIQDMRGELGSISRKGFDVRFGYG-RSRSQ---RVVQDTSVPVDAFKQSCWANMP 56

Query: 352  PELLREVLVRIEASESMWPPRKCVAACAGVCRSWREIMKEIVKVPELSGKLTFPISLKQP 531
            PELLR+VL+RIE SE  WP RK V +CAGVCR+WREI+KEIVKVPE+S KLTFPISLKQP
Sbjct: 57   PELLRDVLMRIELSEDTWPSRKNVVSCAGVCRNWREIVKEIVKVPEVSSKLTFPISLKQP 116

Query: 532  GPRDSIIQCFIKRNRAAQTYHLYLGLTQALT--DNGKLLLAARKCRRTTCTDYIISLDTD 705
            GPR S++QC+I RNR+ QTY+LYLGL QA    D+GK LLAA++ RR TCTDYIISL+ D
Sbjct: 117  GPRGSLVQCYIMRNRSNQTYYLYLGLNQAAASNDDGKFLLAAKRFRRPTCTDYIISLNCD 176

Query: 706  DMSKGSMTYIGKLRSNFLGTKFVIYDSQPPHAGATVAKSRSSRLVGLKQVSPRVPAGNYP 885
            D+S+GS TYIGKLRSNFLGTKF ++D+QP + G  V ++RSSRL+ LKQVSPR+P+GNYP
Sbjct: 177  DVSRGSNTYIGKLRSNFLGTKFTVFDAQPTNPGTQVTRTRSSRLLSLKQVSPRIPSGNYP 236

Query: 886  VAQITYELNVLGSRGPRRMQCTMNAIPASAIEAEGMAPTQMEFLPNNLDSLPSVPFFRSK 1065
            VA I+YELNVLGSRGPRRMQC M+AIPASA+E  G APTQ E + +NL++ PS  FFRSK
Sbjct: 237  VAHISYELNVLGSRGPRRMQCVMDAIPASAVEPGGTAPTQTELIHSNLENFPSFSFFRSK 296

Query: 1066 STRVENLPSGP--VAGHKGALVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVATPE 1239
            S R E+L SGP   A  +G LVLKNK+PRWHEQLQCWCLNF GRVTVASVKNFQLVA PE
Sbjct: 297  SIRAESLSSGPASAAQKEGLLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAAPE 356

Query: 1240 NGAQIGQEHEKVILQFGKIGKDLFTMDFQYPISAFQAFAICLSSFDTKIACE 1395
            NG   G EHE VILQFGK+GKD+FTMD+QYPISAFQAF ICLSSFDTKIACE
Sbjct: 357  NG-PAGPEHENVILQFGKVGKDVFTMDYQYPISAFQAFTICLSSFDTKIACE 407