BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004054
         (491 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002523523.1| ribosomal protein L39e, putative [Ricinus co...   114   8e-24
emb|CBI25619.3| unnamed protein product [Vitis vinifera]              112   2e-23
emb|CBI25617.3| unnamed protein product [Vitis vinifera]              112   2e-23
emb|CBI21094.3| unnamed protein product [Vitis vinifera]              112   3e-23
ref|XP_002869300.1| 60S ribosomal protein L39 [Arabidopsis lyrat...   111   5e-23

>ref|XP_002523523.1| ribosomal protein L39e, putative [Ricinus communis]
           gi|223537230|gb|EEF38862.1| ribosomal protein L39e,
           putative [Ricinus communis]
          Length = 67

 Score =  114 bits (285), Expect = 8e-24
 Identities = 53/61 (86%), Positives = 55/61 (90%)
 Frame = -3

Query: 447 APRTAPQAFTMPSHKSFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 268
           AP  A Q   MPSHK+F+IKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG
Sbjct: 7   APLEALQVAKMPSHKTFIIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 66

Query: 267 F 265
           F
Sbjct: 67  F 67


>emb|CBI25619.3| unnamed protein product [Vitis vinifera]
          Length = 72

 Score =  112 bits (281), Expect = 2e-23
 Identities = 52/59 (88%), Positives = 54/59 (91%)
 Frame = -3

Query: 441 RTAPQAFTMPSHKSFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 265
           R A +   MPSHK+FMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 14  RRARKISKMPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 72


>emb|CBI25617.3| unnamed protein product [Vitis vinifera]
          Length = 70

 Score =  112 bits (281), Expect = 2e-23
 Identities = 52/59 (88%), Positives = 54/59 (91%)
 Frame = -3

Query: 441 RTAPQAFTMPSHKSFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 265
           R A +   MPSHK+FMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 12  RRARKISKMPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 70


>emb|CBI21094.3| unnamed protein product [Vitis vinifera]
          Length = 112

 Score =  112 bits (280), Expect = 3e-23
 Identities = 54/67 (80%), Positives = 58/67 (86%), Gaps = 2/67 (2%)
 Frame = -3

Query: 459 SKLSAPRTAPQAFT--MPSHKSFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHW 286
           + LS+P  A    T  MPSHK+F+IKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHW
Sbjct: 46  TSLSSPDLAADLSTAKMPSHKTFIIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHW 105

Query: 285 RRTKLGF 265
           RRTKLGF
Sbjct: 106 RRTKLGF 112


>ref|XP_002869300.1| 60S ribosomal protein L39 [Arabidopsis lyrata subsp. lyrata]
           gi|297821901|ref|XP_002878833.1| 60S ribosomal protein
           L39 [Arabidopsis lyrata subsp. lyrata]
           gi|297315136|gb|EFH45559.1| 60S ribosomal protein L39
           [Arabidopsis lyrata subsp. lyrata]
           gi|297324672|gb|EFH55092.1| 60S ribosomal protein L39
           [Arabidopsis lyrata subsp. lyrata]
          Length = 51

 Score =  111 bits (278), Expect = 5e-23
 Identities = 50/51 (98%), Positives = 51/51 (100%)
 Frame = -3

Query: 417 MPSHKSFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 265
           MPSHKSFMIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKSFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51