BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00004004
         (970 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    76   5e-21
ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...    75   3e-11
gb|ABN08796.1| Ribonuclease H [Medicago truncatula]                    75   3e-11
gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    68   4e-09
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    67   8e-09

>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 75.9 bits (185), Expect(3) = 5e-21
 Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 5/128 (3%)
 Frame = +3

Query: 465 KSIGWLPPNFGVIKANTDGSSIGNPDMGGVGIIFIDYLCQFLGVQVHVLGITTNFDAEYE 644
           + I W+PP+ G +K N DGS +G+P  G +G+IF      F G     +G  T  +AEY 
Sbjct: 241 REIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALEAEYS 300

Query: 645 GIVMASEIVVSKRWLHLWIESDLMAVVKAF-TNGKVSWTLKARW----MWAKQTLVHWTI 809
             + A E        ++WIE+D + V++AF  N  V W +  RW    ++ +   +    
Sbjct: 301 ACMFAIEKAKELHLTNIWIETDSVNVIRAFHFNTGVPWKMHIRWHNCLLFCRS--IRSLC 358

Query: 810 AYIHREGN 833
            +++REGN
Sbjct: 359 THVNREGN 366



 Score = 43.9 bits (102), Expect(3) = 5e-21
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +3

Query: 15  KVPTDDKVRLKGIYIIS-RCCLCKEDEEIMPHMLWECNATKELY 143
           K+PTDD +R +G YI+S  CC C++  E   H+  +C  T +L+
Sbjct: 95  KLPTDDNLRKRGCYIVSICCCFCRKQAETSSHIFLQCPVTLQLW 138



 Score = 28.1 bits (61), Expect(3) = 5e-21
 Identities = 20/98 (20%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
 Frame = +1

Query: 142 IWDWLSEIFKVHPLLNLQGVITATTTLSPIKEELWNSAVAQLMNQILKTRNDIFFDDKRL 321
           +WDWL +    H  L+   ++     +S + + + NSA+  +M  I    N+ +FD  + 
Sbjct: 137 LWDWLLKATDQH--LDFSSILN----ISRMVQHVMNSAIVHIMWSIWLECNNKYFDGVQK 190

Query: 322 HIPFFKNEII-KVVKAAGLVE----SNTVEDLSILHIF 420
            +    N I+ +V++ + +++    +++++D  +  +F
Sbjct: 191 PMSTLFNTILAEVLRLSFMLDIVKGASSMQDFKLARLF 228


>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
           gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
           protein ccsA [Medicago truncatula]
          Length = 666

 Score = 74.7 bits (182), Expect = 3e-11
 Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
 Frame = +3

Query: 477 WLPPNFGVIKANTDGSSIGNPDMGGVGIIFIDYLCQFLGVQVHVLGITTNFDAEYEGIVM 656
           W PP   ++K N DGSS+G    G +GI+  D    FLG     +G  T  +AE+   +M
Sbjct: 216 WKPPIGDIVKINCDGSSVGRHPCGSIGIVIRDSNHHFLGAISSNIGNATPLEAEFCAGMM 275

Query: 657 ASEIVVSKRWLHLWIESDLMAVVKAFTNG-KVSWTLKARWM--WAKQTLVHWTIAYIHRE 827
           A E     + +H+ +E+D + VV AF  G  V W ++ARW   W     +  +  +I RE
Sbjct: 276 AMEKAQEMQLMHVCLETDSLKVVNAFNKGLGVPWQMRARWQNCWDFCDSISCSCVHILRE 335

Query: 828 GN 833
           GN
Sbjct: 336 GN 337


>gb|ABN08796.1| Ribonuclease H [Medicago truncatula]
          Length = 221

 Score = 74.7 bits (182), Expect = 3e-11
 Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
 Frame = +3

Query: 477 WLPPNFGVIKANTDGSSIGNPDMGGVGIIFIDYLCQFLGVQVHVLGITTNFDAEYEGIVM 656
           W PP   ++K N DGSS+G    G +GI+  D    FLG     +G  T  +AE+   +M
Sbjct: 53  WKPPIGDIVKINCDGSSVGRHPCGSIGIVIRDSNHHFLGAISSNIGNATPLEAEFCAGMM 112

Query: 657 ASEIVVSKRWLHLWIESDLMAVVKAFTNG-KVSWTLKARWM--WAKQTLVHWTIAYIHRE 827
           A E     + +H+ +E+D + VV AF  G  V W ++ARW   W     +  +  +I RE
Sbjct: 113 AMEKAQEMQLMHVCLETDSLKVVNAFNKGLGVPWQMRARWQNCWDFCDSISCSCVHILRE 172

Query: 828 GN 833
           GN
Sbjct: 173 GN 174


>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 67.8 bits (164), Expect = 4e-09
 Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
 Frame = +3

Query: 495 GVIKANTDGSSIGNPDMGGVGIIFIDYLCQFLGVQVHVLGITTNFDAEYEGIVMASEIVV 674
           G +K N DGS+ G P  G  G +F ++    LG     +G  T F AE    + A E  +
Sbjct: 9   GRVKINLDGSAFGAPSCGATGGVFRNWQTHSLGGFAQNIGHATCFKAELCAAIFAIEKSI 68

Query: 675 SKRWLHLWIESDLMAVVKAFTNGK-VSWTLKARW--MWAKQTLVHWTIAYIHREGNFG 839
                 +W+E+D   VVKAF++ + V W L+ RW    A    +     +IHREGN G
Sbjct: 69  EYNLRDIWLETDSKLVVKAFSSSEHVPWQLRTRWNNCLALAQKIKCVCTHIHREGNAG 126


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 66.6 bits (161), Expect = 8e-09
 Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
 Frame = +3

Query: 441  KNLSAVYWKSIGWLPPNFGVIKANTDGSSIGNPDMGGVGIIFIDYLCQFLGVQVHVLGIT 620
            K++  V WK+     P+  ++K NTDGS +G   +   G +F D    FLG     +G+ 
Sbjct: 1008 KDIILVLWKN-----PSPPLLKVNTDGSVVGG--LAACGGLFRDSSGSFLGAFSCNIGLA 1060

Query: 621  TNFDAEYEGIVMASEIVVSKRWLHLWIESDLMAVVKAFTNGK-VSWTLKARWMWAKQTLV 797
            + F AE    ++A E      W +LW+ESD  + +  F+N   V W L+ RW  A++  +
Sbjct: 1061 SVFHAETLAFILALEHAAHHGWRNLWLESDSTSALMIFSNSSLVQWLLRNRWHNAQRLGI 1120

Query: 798  HWTIAYIHREGN 833
                ++I  EGN
Sbjct: 1121 QVISSHILHEGN 1132