BLASTX nr result
ID: Coptis25_contig00003469
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00003469
(2277 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ... 593 e-167
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub... 590 e-166
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode... 584 e-164
ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerase D sub... 583 e-164
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub... 582 e-163
>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
subunit, putative [Ricinus communis]
Length = 1203
Score = 593 bits (1530), Expect = e-167
Identities = 289/346 (83%), Positives = 317/346 (91%), Gaps = 1/346 (0%)
Frame = +3
Query: 1242 LSHQLYYPQRPLFRTVISDCLGKPEYPLGKN-VHPMSEIYNGQNAIVAVNVHQGYNQEDS 1418
LSHQLYYPQRPLFRTV SDCLGKP G N + P E+YNGQNAIVAVNVH GYNQEDS
Sbjct: 769 LSHQLYYPQRPLFRTVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHLGYNQEDS 828
Query: 1419 LVMNRASLERGMFRTEHIRCYKAEVENKEILETKRMKSKDKIDFGKMPSKIGRVDSLDDD 1598
LVMNRASLERGMFR+EHIR YKA+V+NKE+L+ KR K D ++FGK+PSKIGRVDSLDDD
Sbjct: 829 LVMNRASLERGMFRSEHIRSYKADVDNKELLD-KRRKYDDNVNFGKIPSKIGRVDSLDDD 887
Query: 1599 GFPFIGANLQSGDIVIGKCAESGADHSIKLKHTERGKVQKVILSANDEGTNFAAVSLRQV 1778
GFPFIGANLQSGDIVIG+CAESG DHSIKLKHTERG VQKV+LS+NDEG NFA VSLRQV
Sbjct: 888 GFPFIGANLQSGDIVIGRCAESGPDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQV 947
Query: 1779 RSPIVGDKFSSMHGQKGVIGLLESQENFPFTHQGIVPDIVINPHAFPTRQTPGQLLEAAL 1958
RSP +GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPH+FP+RQTPGQLLEAAL
Sbjct: 948 RSPCLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHSFPSRQTPGQLLEAAL 1007
Query: 1959 GKGIACGGLMRYATPFTTPSIDQITDQLHRAGYSRWGHERVYSGHYGEMMRSLIFIGPTF 2138
GKGIACGG M+YATPF+T S++ IT+QLHRAG+SRWG+ERVY+G GEM+RSLIF+GPTF
Sbjct: 1008 GKGIACGGSMKYATPFSTLSVEAITNQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTF 1067
Query: 2139 YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDC 2276
YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDC
Sbjct: 1068 YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 1113
Score = 474 bits (1219), Expect = e-131
Identities = 236/366 (64%), Positives = 282/366 (77%), Gaps = 6/366 (1%)
Frame = +2
Query: 17 YLFPTLTGSKQKALFLGYMVKRLLQSYSGQGKPDNKDDFRNKRLDLAGELLERELRNHIK 196
YLFPTL +QKA FLGYMVK LLQ+Y+GQ K +N D FRNKR +LA ELLEREL+ HI
Sbjct: 380 YLFPTLHSLRQKARFLGYMVKCLLQAYNGQRKCNNWDSFRNKRFELAKELLERELKVHIA 439
Query: 197 HAERRMVKAMQRDLYGERNLRQIEHYLDASLITNGLTKAFSTGAWSHHFKYSEKINGVVA 376
HA RRM KA+Q+DLYG+R++R IEHYLDAS++TNGL++AFSTGAWSH +K E+I+GVVA
Sbjct: 440 HARRRMAKALQKDLYGDRDVRPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVA 499
Query: 377 NLRRTNPLQTMCDMRKTRQHVQYSGKVGDARFPHPSHWGKLCFLSTSDGENCGLVKNMAI 556
NL R NPLQTM D+RKTR HVQY+GKVGDARFPHPSHWG++CFLST DGENCGLVKN+A
Sbjct: 500 NLGRANPLQTMVDLRKTRYHVQYTGKVGDARFPHPSHWGRVCFLSTPDGENCGLVKNLAT 559
Query: 557 TGIVSTNLIQPLLGILLVCGMEKXXXXXXXXXXKGKNKIFLDGEWVGVCRDSLSLVNTLK 736
TG+VS N+++PL+ L+ GMEK + K+K+FL+GEWVGVC DS V L+
Sbjct: 560 TGLVSVNILEPLIDKLIARGMEKVPEDSHSDLDE-KDKVFLNGEWVGVCEDSRLFVAELR 618
Query: 737 RKRRSKEVPPQVEIKRDQQQEEVRIFTDSGRILRPLLVVENLKKINLLKGG-YNIHSLMN 913
R RR K++P QVEIKRD+QQ+EVRIF+D+GRILRPLLVV+NL KI KGG SL++
Sbjct: 619 RLRRRKKLPQQVEIKRDEQQQEVRIFSDAGRILRPLLVVQNLHKIEAFKGGNCTFQSLLD 678
Query: 914 KXXXXXXXXXXXXDCQTAWGVKYLFS-----EEKVYTHCELDPSFLLGLSCGIIPFTNHD 1078
K DC TAWG+K+L S + YTHCELD SFLLGLSCGIIPF NHD
Sbjct: 679 KGIIEFVGTEEEEDCSTAWGIKFLLSGVDGKQSLKYTHCELDMSFLLGLSCGIIPFANHD 738
Query: 1079 HARRAL 1096
HARR L
Sbjct: 739 HARRVL 744
>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
vinifera]
Length = 1198
Score = 590 bits (1520), Expect = e-166
Identities = 287/346 (82%), Positives = 315/346 (91%), Gaps = 1/346 (0%)
Frame = +3
Query: 1242 LSHQLYYPQRPLFRTVISDCLGKPEYPLG-KNVHPMSEIYNGQNAIVAVNVHQGYNQEDS 1418
LSHQLYYPQRPLFRT+ISDCLGKP Y G K + P E +NGQ AIVAVNVH GYNQEDS
Sbjct: 764 LSHQLYYPQRPLFRTMISDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAVNVHLGYNQEDS 823
Query: 1419 LVMNRASLERGMFRTEHIRCYKAEVENKEILETKRMKSKDKIDFGKMPSKIGRVDSLDDD 1598
LVMNRASLERGMFR+EHIR YK+EV+N E L+ KR KS+D + FGKM SKIGRVDSLDDD
Sbjct: 824 LVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKR-KSEDSVHFGKMQSKIGRVDSLDDD 882
Query: 1599 GFPFIGANLQSGDIVIGKCAESGADHSIKLKHTERGKVQKVILSANDEGTNFAAVSLRQV 1778
GFPFIGANLQ+GDIVIG+CAESG DHSIKLKHTERG VQKV++SAND+G NFA VSLRQV
Sbjct: 883 GFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQV 942
Query: 1779 RSPIVGDKFSSMHGQKGVIGLLESQENFPFTHQGIVPDIVINPHAFPTRQTPGQLLEAAL 1958
R+P +GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAFP+RQTPGQLLEAAL
Sbjct: 943 RTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 1002
Query: 1959 GKGIACGGLMRYATPFTTPSIDQITDQLHRAGYSRWGHERVYSGHYGEMMRSLIFIGPTF 2138
GKGIACGGL+R+ATPF+T S+D I DQLHRAG+SRWGHERVY+G GEM+RSLIF+GPTF
Sbjct: 1003 GKGIACGGLLRHATPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPTF 1062
Query: 2139 YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDC 2276
YQRLIHMAEDKVKFRNTGPVHPLTRQPV+DRKRFGG+KFGEMERDC
Sbjct: 1063 YQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDC 1108
Score = 504 bits (1298), Expect = e-140
Identities = 250/370 (67%), Positives = 290/370 (78%), Gaps = 5/370 (1%)
Frame = +2
Query: 2 DCLDKYLFPTLTGSKQKALFLGYMVKRLLQSYSGQGKPDNKDDFRNKRLDLAGELLEREL 181
+C+ KYLFP +G KQKA FLGYMVK LLQ+Y+G+ K DN+DDFRNKRL+LAGELLEREL
Sbjct: 371 ECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLEREL 430
Query: 182 RNHIKHAERRMVKAMQRDLYGERNLRQIEHYLDASLITNGLTKAFSTGAWSHHFKYSEKI 361
R HI+HAERRMVKAMQR+LYG+R+LR IE+YLDAS+ITNGL++AFSTG WSH FK E+I
Sbjct: 431 RVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERI 490
Query: 362 NGVVANLRRTNPLQTMCDMRKTRQHVQYSGKVGDARFPHPSHWGKLCFLSTSDGENCGLV 541
+GVVA LRRTNPLQ DMRKTRQ VQY+GKVGDAR+PHPSHWGK+CFLST DGENCGLV
Sbjct: 491 SGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLV 550
Query: 542 KNMAITGIVSTNLIQPLLGILLVCGMEKXXXXXXXXXXKGKNKIFLDGEWVGVCRDSLSL 721
KN+AITG+VST ++ PL+ L CGMEK GKNK+FLDG+WVGVC D +S
Sbjct: 551 KNLAITGLVSTEVLDPLVDKLFDCGMEK-LVDDTSTKLSGKNKVFLDGDWVGVCEDPISF 609
Query: 722 VNTLKRKRRSKEVPPQVEIKRDQQQEEVRIFTDSGRILRPLLVVENLKKINLLKG-GYNI 898
V L+ KRR KE+P QVEIKRD+QQ EVRIF+D+GRILRPLLVVENLKK+ KG +
Sbjct: 610 VVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVKTFKGDDFTF 669
Query: 899 HSLMNKXXXXXXXXXXXXDCQTAWGVKYLFSEEK----VYTHCELDPSFLLGLSCGIIPF 1066
SL++K DC TAWG+KYL YTHCELD SFLLGLSCGIIP+
Sbjct: 670 QSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGHDDPPVKYTHCELDMSFLLGLSCGIIPY 729
Query: 1067 TNHDHARRAL 1096
NHDHARR L
Sbjct: 730 ANHDHARRVL 739
>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
Length = 1019
Score = 584 bits (1506), Expect = e-164
Identities = 280/345 (81%), Positives = 315/345 (91%), Gaps = 1/345 (0%)
Frame = +3
Query: 1245 SHQLYYPQRPLFRTVISDCLGKPEYPLGKN-VHPMSEIYNGQNAIVAVNVHQGYNQEDSL 1421
+HQLYYPQRPLFRT++SDCLGKP YPLG N + P +E +NGQ AIVAVNVH GYNQEDSL
Sbjct: 586 THQLYYPQRPLFRTMVSDCLGKPGYPLGHNGIVPRAEYFNGQCAIVAVNVHLGYNQEDSL 645
Query: 1422 VMNRASLERGMFRTEHIRCYKAEVENKEILETKRMKSKDKIDFGKMPSKIGRVDSLDDDG 1601
VMNRASLERGMFR+EHIR YKA+V+NKE + K+ K +D ++FGK+ SKIGRVDSLDDDG
Sbjct: 646 VMNRASLERGMFRSEHIRSYKADVDNKESVG-KKPKFEDSVNFGKVQSKIGRVDSLDDDG 704
Query: 1602 FPFIGANLQSGDIVIGKCAESGADHSIKLKHTERGKVQKVILSANDEGTNFAAVSLRQVR 1781
FPFIGANLQ+GDIV+G+CAESGADHSIKLKHTERG VQKV+LSANDEG NFA VSLRQVR
Sbjct: 705 FPFIGANLQNGDIVVGRCAESGADHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVR 764
Query: 1782 SPIVGDKFSSMHGQKGVIGLLESQENFPFTHQGIVPDIVINPHAFPTRQTPGQLLEAALG 1961
+P +GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIV+NPHAFP+RQTPGQLLEAALG
Sbjct: 765 TPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVVNPHAFPSRQTPGQLLEAALG 824
Query: 1962 KGIACGGLMRYATPFTTPSIDQITDQLHRAGYSRWGHERVYSGHYGEMMRSLIFIGPTFY 2141
KGIACGGL +YATPF+T S+D +TDQLHRAG+SRWG ERVY+G GEM+ SL+F+GPTFY
Sbjct: 825 KGIACGGLQKYATPFSTLSVDAVTDQLHRAGFSRWGSERVYNGRTGEMIHSLVFMGPTFY 884
Query: 2142 QRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDC 2276
QRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDC
Sbjct: 885 QRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 929
Score = 499 bits (1284), Expect = e-138
Identities = 252/369 (68%), Positives = 288/369 (78%), Gaps = 6/369 (1%)
Frame = +2
Query: 8 LDKYLFPTLTGSKQKALFLGYMVKRLLQSYSGQGKPDNKDDFRNKRLDLAGELLERELRN 187
L YLFP L+G +QKA FLGYMVK LLQ+Y+G+ K DN+DDFRNKRL+LAGELLERELR
Sbjct: 193 LSNYLFPNLSGFRQKARFLGYMVKCLLQAYTGRRKIDNRDDFRNKRLELAGELLERELRV 252
Query: 188 HIKHAERRMVKAMQRDLYGERNLRQIEHYLDASLITNGLTKAFSTGAWSHHFKYSEKING 367
H+KHAERRMVKAMQRDLYGER + IEHYLDAS+ITNGL++AFSTGAWSH +K E+I+G
Sbjct: 253 HVKHAERRMVKAMQRDLYGERVIHAIEHYLDASIITNGLSRAFSTGAWSHPYKKMERISG 312
Query: 368 VVANLRRTNPLQTMCDMRKTRQHVQYSGKVGDARFPHPSHWGKLCFLSTSDGENCGLVKN 547
VVA LRRTNPLQT+ DMRKTRQ V Y+GKVGDAR+PHPSHWGK+CFLST DGENCGLVKN
Sbjct: 313 VVATLRRTNPLQTIADMRKTRQQVSYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 372
Query: 548 MAITGIVSTNLIQPLLGILLVCGMEKXXXXXXXXXXKGKNKIFLDGEWVGVCRDSLSLVN 727
+AITG+VSTN+ + L LL GMEK GK K+FLDG WVGVC DS+S V
Sbjct: 373 LAITGLVSTNIEEHFLDKLLDSGMEK-LVDDTSTLLSGKVKVFLDGNWVGVCGDSVSFVA 431
Query: 728 TLKRKRRSKEVPPQVEIKRDQQQEEVRIFTDSGRILRPLLVVENLKKINLLKGG-YNIHS 904
L+RKRR KEVP QVEIKRD+Q EVR+F+D+GRILRPLLVVENL KI KGG Y+ S
Sbjct: 432 ALRRKRRRKEVPHQVEIKRDEQHREVRVFSDAGRILRPLLVVENLGKIKASKGGDYSFQS 491
Query: 905 LMNKXXXXXXXXXXXXDCQTAWGVKYLFSEEKV-----YTHCELDPSFLLGLSCGIIPFT 1069
L++K DC+TAWG+ YLF E + YTHCELD SFLLGLS IIPF
Sbjct: 492 LLDKGVIEFIGTEEEEDCRTAWGINYLFMENEAKATVKYTHCELDMSFLLGLSAAIIPFA 551
Query: 1070 NHDHARRAL 1096
NHDHARR L
Sbjct: 552 NHDHARRVL 560
>ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Glycine
max]
Length = 1205
Score = 583 bits (1504), Expect = e-164
Identities = 277/346 (80%), Positives = 320/346 (92%), Gaps = 1/346 (0%)
Frame = +3
Query: 1242 LSHQLYYPQRPLFRTVISDCLGKPEYPLGKN-VHPMSEIYNGQNAIVAVNVHQGYNQEDS 1418
LSHQL+YPQ+PLFRT+ SDCLGKP++ LG++ + P +E YNGQNAIVAVNVH GYNQEDS
Sbjct: 771 LSHQLHYPQKPLFRTMTSDCLGKPDHSLGQSKIPPKAEFYNGQNAIVAVNVHLGYNQEDS 830
Query: 1419 LVMNRASLERGMFRTEHIRCYKAEVENKEILETKRMKSKDKIDFGKMPSKIGRVDSLDDD 1598
LVMNRASL+RGMFR+EHIR YK+E++NKE + KR K +D ++F K+ SKIGRVDSLDDD
Sbjct: 831 LVMNRASLQRGMFRSEHIRSYKSEIDNKESSDKKR-KPEDIVNFAKLQSKIGRVDSLDDD 889
Query: 1599 GFPFIGANLQSGDIVIGKCAESGADHSIKLKHTERGKVQKVILSANDEGTNFAAVSLRQV 1778
GFP++GANLQSGDI+IGKCAESGAD+S+KLKHTERG VQKV+LS+NDEG NFA VSLRQV
Sbjct: 890 GFPYVGANLQSGDIIIGKCAESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQV 949
Query: 1779 RSPIVGDKFSSMHGQKGVIGLLESQENFPFTHQGIVPDIVINPHAFPTRQTPGQLLEAAL 1958
RSP++GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAFP+RQTPGQLLEAAL
Sbjct: 950 RSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAAL 1009
Query: 1959 GKGIACGGLMRYATPFTTPSIDQITDQLHRAGYSRWGHERVYSGHYGEMMRSLIFIGPTF 2138
GKGIACGG+++ ATPF+TPS+D IT+QLHRAG+SRWG+ERVY+G GEM+RSLIF+GPTF
Sbjct: 1010 GKGIACGGILKQATPFSTPSVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTF 1069
Query: 2139 YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDC 2276
YQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDC
Sbjct: 1070 YQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 1115
Score = 447 bits (1150), Expect = e-123
Identities = 222/373 (59%), Positives = 279/373 (74%), Gaps = 8/373 (2%)
Frame = +2
Query: 2 DCLDKYLFPTLTGSKQKALFLGYMVKRLLQSYSGQGKPDNKDDFRNKRLDLAGELLEREL 181
+CL+ Y+FP ++G +KA FL YMVK LL +Y+G+ K DN+DDFRNKRL+LA ELL+REL
Sbjct: 375 ECLEMYVFPGISGLNRKARFLAYMVKGLLLAYTGRRKCDNRDDFRNKRLELASELLDREL 434
Query: 182 RNHIKHAERRMVKAMQRDLYGERNLRQIEHYLDASLITNGLTKAFSTGAWSHHFKYSEKI 361
+ H+ HA +RM KA+QRDLYG+R++R IEHYLDAS+ITNGL +AFSTGAWSH +K E+I
Sbjct: 435 KVHVAHARKRMAKALQRDLYGDRDVRPIEHYLDASIITNGLQRAFSTGAWSHPYKRMERI 494
Query: 362 NGVVANLRRTNPLQTMCDMRKTRQHVQYSGKVGDARFPHPSHWGKLCFLSTSDGENCGLV 541
+GVVAN+ RTNPLQTM ++R+ RQ VQY+GKVGDAR+PHPSHWGK+CFL+T DGENCGLV
Sbjct: 495 SGVVANVGRTNPLQTMAELRRARQQVQYTGKVGDARYPHPSHWGKVCFLTTPDGENCGLV 554
Query: 542 KNMAITGIVSTNLIQPLLGILLV---CGMEKXXXXXXXXXXKGKNKIFLDGEWVGVCRDS 712
KN+++TG+VST++ ILL CGM++ +K+ L+G+WVGVC DS
Sbjct: 555 KNLSVTGLVSTDVTDVTESILLKLVDCGMQELVDDTSTHLG-SMDKVLLNGDWVGVCPDS 613
Query: 713 LSLVNTLKRKRRSKEVPPQVEIKRDQQQEEVRIFTDSGRILRPLLVVENLKKINLLKGG- 889
S V L+ +RR E+P QVEIKRDQ Q EVRI++D+GRILRPLLVV NL KI K
Sbjct: 614 SSFVAELRSRRRRNELPHQVEIKRDQSQHEVRIYSDAGRILRPLLVVGNLLKIKGFKSDR 673
Query: 890 YNIHSLMNKXXXXXXXXXXXXDCQTAWGVKYLFSEE----KVYTHCELDPSFLLGLSCGI 1057
Y+ SL++K DC TAWGV+YLF +E YTHCELD SFLLGLSC +
Sbjct: 674 YSFQSLLDKGVIELIGPEEEEDCCTAWGVEYLFGKEGKRSVKYTHCELDMSFLLGLSCSL 733
Query: 1058 IPFTNHDHARRAL 1096
+PF NHDHARR L
Sbjct: 734 VPFANHDHARRVL 746
>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
sativus]
Length = 1197
Score = 582 bits (1501), Expect = e-163
Identities = 286/346 (82%), Positives = 311/346 (89%), Gaps = 1/346 (0%)
Frame = +3
Query: 1242 LSHQLYYPQRPLFRTVISDCLGKPEYPLGK-NVHPMSEIYNGQNAIVAVNVHQGYNQEDS 1418
LSHQL+YPQRPLFRT+ +DCLG P Y + P E YNGQNAIVAVNVH GYNQEDS
Sbjct: 763 LSHQLHYPQRPLFRTMTADCLGTPGYLSSHAGILPKPEFYNGQNAIVAVNVHLGYNQEDS 822
Query: 1419 LVMNRASLERGMFRTEHIRCYKAEVENKEILETKRMKSKDKIDFGKMPSKIGRVDSLDDD 1598
LVMNRASLERGMFR+EHIR YKAEV+NKE E KR KS D I+FGK SKIGRVDSLDDD
Sbjct: 823 LVMNRASLERGMFRSEHIRSYKAEVDNKESSE-KRRKSDDAINFGKTQSKIGRVDSLDDD 881
Query: 1599 GFPFIGANLQSGDIVIGKCAESGADHSIKLKHTERGKVQKVILSANDEGTNFAAVSLRQV 1778
GFP+IGANLQSGDIVIG+CAESGADHSIKLKHTE+G VQKV+LS+ND+G N+A VSLRQV
Sbjct: 882 GFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQV 941
Query: 1779 RSPIVGDKFSSMHGQKGVIGLLESQENFPFTHQGIVPDIVINPHAFPTRQTPGQLLEAAL 1958
RSP +GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAFP+RQTPGQLLEAAL
Sbjct: 942 RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 1001
Query: 1959 GKGIACGGLMRYATPFTTPSIDQITDQLHRAGYSRWGHERVYSGHYGEMMRSLIFIGPTF 2138
GKGIA GG ++YATPF+TPS+D ITDQLHRAG+SRWG ERVY+G GEMMRSLIF+GPTF
Sbjct: 1002 GKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTF 1061
Query: 2139 YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDC 2276
YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDC
Sbjct: 1062 YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 1107
Score = 461 bits (1185), Expect = e-127
Identities = 228/368 (61%), Positives = 277/368 (75%), Gaps = 3/368 (0%)
Frame = +2
Query: 2 DCLDKYLFPTLTGSKQKALFLGYMVKRLLQSYSGQGKPDNKDDFRNKRLDLAGELLEREL 181
DCL+ YLF +L GSKQK FLGYMVK LLQ+Y+G+ K DN+DDFRNKR +LA ELLEREL
Sbjct: 372 DCLNLYLFASLKGSKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAAELLEREL 431
Query: 182 RNHIKHAERRMVKAMQRDLYGERNLRQIEHYLDASLITNGLTKAFSTGAWSHHFKYSEKI 361
+ HI HA RRM KA+QRDLYG+R + IEHYLDAS+ITNGL++AFSTGAW+H FK E+I
Sbjct: 432 KVHIAHARRRMEKALQRDLYGDRQVHPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERI 491
Query: 362 NGVVANLRRTNPLQTMCDMRKTRQHVQYSGKVGDARFPHPSHWGKLCFLSTSDGENCGLV 541
+GVVA L R NPLQTM ++R+TRQ V Y+GKVGDAR+PHPSHWG++CFLST DGENCGL+
Sbjct: 492 SGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLI 551
Query: 542 KNMAITGIVSTNLIQPLLGILLVCGMEKXXXXXXXXXXKGKNKIFLDGEWVGVCRDSLSL 721
KN++ TG+VS N + + L CGME GK +IFLDGEWVGVC DSLS
Sbjct: 552 KNLSGTGLVSLNTKKSITPTLFRCGMENLVDNTSTSFC-GKYRIFLDGEWVGVCEDSLSF 610
Query: 722 VNTLKRKRRSKEVPPQVEIKRDQQQEEVRIFTDSGRILRPLLVVENLKKINLLKG-GYNI 898
V ++RKRR QVE+KRD+Q +EVRIF+D+GRILRPLLVVENL +I+ KG Y
Sbjct: 611 VTNVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTF 670
Query: 899 HSLMNKXXXXXXXXXXXXDCQTAWGVKYLFSEEKV--YTHCELDPSFLLGLSCGIIPFTN 1072
SL++K DC+ AW +K+L +E Y+HCELD SFLLGLSCG++PF N
Sbjct: 671 QSLLDKGIIELIGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLGLSCGLVPFAN 730
Query: 1073 HDHARRAL 1096
HDHARRAL
Sbjct: 731 HDHARRAL 738