BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00003057
         (265 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004168984.1| PREDICTED: pentatricopeptide repeat-containi...    75   4e-12
ref|XP_004146598.1| PREDICTED: pentatricopeptide repeat-containi...    75   4e-12
ref|XP_002531596.1| pentatricopeptide repeat-containing protein,...    74   1e-11
ref|XP_002869870.1| hypothetical protein ARALYDRAFT_354609 [Arab...    70   1e-10
ref|XP_003633265.1| PREDICTED: pentatricopeptide repeat-containi...    69   4e-10

>ref|XP_004168984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 461

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 31/60 (51%), Positives = 47/60 (78%)
 Frame = +1

Query: 85  NLFKRIASLGDQRVSAVPVLEQWVQQGTSVIKDQLTSLIRDLKAYRRFKHPLEISQWMSD 264
           NL++RI+ +GD  +S  P+L+QWV +G  V +D+L  +I++L+ Y+RFKH LEIS+WMSD
Sbjct: 30  NLYRRISPVGDPNISVTPLLDQWVLEGRLVQQDELRHIIKELRVYKRFKHALEISKWMSD 89


>ref|XP_004146598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 227

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 31/60 (51%), Positives = 47/60 (78%)
 Frame = +1

Query: 85  NLFKRIASLGDQRVSAVPVLEQWVQQGTSVIKDQLTSLIRDLKAYRRFKHPLEISQWMSD 264
           NL++RI+ +GD  +S  P+L+QWV +G  V +D+L  +I++L+ Y+RFKH LEIS+WMSD
Sbjct: 30  NLYRRISPVGDPNISVTPLLDQWVLEGRLVQQDELRHIIKELRVYKRFKHALEISKWMSD 89


>ref|XP_002531596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528792|gb|EEF30799.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 300

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 34/77 (44%), Positives = 52/77 (67%)
 Frame = +1

Query: 34  PSLSRALFYTTDTCHGTNLFKRIASLGDQRVSAVPVLEQWVQQGTSVIKDQLTSLIRDLK 213
           P+ S+  F      +   L++RI+ +GD +VS VP+L+QW+++G SV KDQL   I++L+
Sbjct: 33  PTSSQKWFRERGKDNLNQLYRRISPVGDPKVSIVPILDQWIEEGKSVNKDQLQVFIKELR 92

Query: 214 AYRRFKHPLEISQWMSD 264
             +R+ H LEIS WMSD
Sbjct: 93  YCKRYTHALEISMWMSD 109


>ref|XP_002869870.1| hypothetical protein ARALYDRAFT_354609 [Arabidopsis lyrata subsp.
           lyrata] gi|297315706|gb|EFH46129.1| hypothetical protein
           ARALYDRAFT_354609 [Arabidopsis lyrata subsp. lyrata]
          Length = 480

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 38/90 (42%), Positives = 57/90 (63%), Gaps = 5/90 (5%)
 Frame = +1

Query: 10  LTNPILVLPSLSRALFYTTDTCHGTN-----LFKRIASLGDQRVSAVPVLEQWVQQGTSV 174
           L N + VL SL R    T    +G++     L+KRI+ LGD ++S VPVL++W  +G   
Sbjct: 10  LNNGVNVLFSLQRR---TLSRGYGSSMGRFGLYKRISPLGDPKISIVPVLDEWRGEGNYT 66

Query: 175 IKDQLTSLIRDLKAYRRFKHPLEISQWMSD 264
            K++L  +I++L  Y+RF H LE+S+WMSD
Sbjct: 67  SKEELRGMIKELIKYKRFVHALEVSRWMSD 96


>ref|XP_003633265.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Vitis vinifera]
          Length = 461

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 30/61 (49%), Positives = 45/61 (73%)
 Frame = +1

Query: 82  TNLFKRIASLGDQRVSAVPVLEQWVQQGTSVIKDQLTSLIRDLKAYRRFKHPLEISQWMS 261
           ++L+ RI ++ D + S  P+L QW+++G +V K QL SL+R +K +RRF H LEISQWM+
Sbjct: 22  SSLYDRIQAVRDPKASISPLLNQWIEEGQTVSKPQLQSLVRIMKDFRRFHHALEISQWMT 81

Query: 262 D 264
           D
Sbjct: 82  D 82