BLASTX nr result
ID: Coptis25_contig00001449
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00001449
(1934 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002268036.2| PREDICTED: splicing factor 3A subunit 3-like... 358 0.0
ref|XP_003523375.1| PREDICTED: splicing factor 3A subunit 3-like... 369 0.0
ref|XP_003526707.1| PREDICTED: splicing factor 3A subunit 3-like... 368 0.0
ref|XP_002317774.1| predicted protein [Populus trichocarpa] gi|2... 358 0.0
ref|XP_004145709.1| PREDICTED: splicing factor 3A subunit 3-like... 350 0.0
>ref|XP_002268036.2| PREDICTED: splicing factor 3A subunit 3-like [Vitis vinifera]
gi|302144037|emb|CBI23142.3| unnamed protein product
[Vitis vinifera]
Length = 509
Score = 358 bits (919), Expect(3) = 0.0
Identities = 172/244 (70%), Positives = 192/244 (78%)
Frame = +1
Query: 964 ALSALGLKSGGTVKERAERLFLTKHTPLEQLDKKHFLKGSCGVKQNGTAAVSERTGDLKN 1143
AL+ALGLK+GGTV++RAERLFLTKHTPLEQLD+KHF KGS +QNGT A + K
Sbjct: 267 ALAALGLKTGGTVQQRAERLFLTKHTPLEQLDQKHFAKGSRRSEQNGTPAAPKEADSSKE 326
Query: 1144 IALTEAKLKRLCEDLLNEIIVQTKENVEKKQALTFXXXXXXXXXXXXXXXXXXXXXXXQI 1323
IAL EAKL+++CE LL E IV+TKEN+EKKQALT+ QI
Sbjct: 327 IALLEAKLRKICE-LLYETIVRTKENIEKKQALTYEEMEAEREEEEVQADTESDDEEQQI 385
Query: 1324 YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAFERHFKEWRHQHGMRC 1503
YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAFERHFKEWRHQHGMRC
Sbjct: 386 YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAFERHFKEWRHQHGMRC 445
Query: 1504 LGIPNTKNFNEVTSIEEAQELWRKIQQRQGVNKWRPXXXXXXXXXXGNIYNKKTYTDLQR 1683
LGIPNTKNFNE+TSI+EA+ LW +IQ+RQG+NKWRP GNIYNKKTYTDLQR
Sbjct: 446 LGIPNTKNFNEITSIKEAKVLWERIQERQGLNKWRPDLEEEYEDKEGNIYNKKTYTDLQR 505
Query: 1684 QGLL 1695
QGL+
Sbjct: 506 QGLI 509
Score = 306 bits (785), Expect(3) = 0.0
Identities = 142/208 (68%), Positives = 178/208 (85%), Gaps = 1/208 (0%)
Frame = +2
Query: 269 VEIYEDKDSARKDEIAALGGQSGN-TNVFGAFYDRLKEIREYHRRHPSARVIDASEDYDE 445
++IYEDKD+ARKDEIAALGGQ+ TNVF AFYDRLKEIREYHR+H +ARV+DA+E+Y+E
Sbjct: 59 IDIYEDKDNARKDEIAALGGQTATGTNVFSAFYDRLKEIREYHRKHQAARVVDANEEYEE 118
Query: 446 LLKDEPLVEFSGEEGYGRYFDMHELYNEYINSKFGKLVEYSTYLDIFSQTHEIPRNLKLT 625
LLK+E +EF GEE +GRY D+HELYNEYINSKFG+ +EYS Y+++FS+ +IPR LKLT
Sbjct: 119 LLKEELRIEFRGEEAFGRYLDLHELYNEYINSKFGEHIEYSAYVEVFSEPQKIPRKLKLT 178
Query: 626 GAYKDYLEHLLEYLIHFFQRIEPLQDLDRFFSKVESEFEELWANGNVEGWENKGLENGHI 805
Y++YLE+LLEYLI+FF+R EPLQDLDR F+K+ ++FEE WANG VEGWEN+ ENG++
Sbjct: 179 RQYREYLENLLEYLIYFFERTEPLQDLDRIFTKLATDFEEQWANGMVEGWENESQENGNV 238
Query: 806 SSHEALIDLDYYSTMEELMEVGPGKLKE 889
+ A IDLDYYST+EE+MEVGP LKE
Sbjct: 239 PTQHAAIDLDYYSTVEEVMEVGPEMLKE 266
Score = 99.0 bits (245), Expect(3) = 0.0
Identities = 48/59 (81%), Positives = 55/59 (93%)
Frame = +3
Query: 45 MSSTLLEVTRSSHEEVERLERLIVKDLQKEPASSRERLFQNHRVRNMIDSITSTTHKLV 221
MSSTLLEVTR+ HEE+ERLERLIVKDLQ EPASS++RLFQ+HRVRNMID+IT TT KL+
Sbjct: 1 MSSTLLEVTRAGHEEIERLERLIVKDLQNEPASSKDRLFQSHRVRNMIDTITITTEKLI 59
>ref|XP_003523375.1| PREDICTED: splicing factor 3A subunit 3-like [Glycine max]
Length = 509
Score = 369 bits (946), Expect(3) = 0.0
Identities = 177/244 (72%), Positives = 197/244 (80%)
Frame = +1
Query: 964 ALSALGLKSGGTVKERAERLFLTKHTPLEQLDKKHFLKGSCGVKQNGTAAVSERTGDLKN 1143
AL+ALGLK+GGTV++RAERLFLTKHTPLE+LDKKHF KG+ GV++NG AAVS+ G+ K
Sbjct: 267 ALAALGLKTGGTVQQRAERLFLTKHTPLEKLDKKHFAKGARGVEKNGVAAVSQEDGNSKE 326
Query: 1144 IALTEAKLKRLCEDLLNEIIVQTKENVEKKQALTFXXXXXXXXXXXXXXXXXXXXXXXQI 1323
IAL EAK+ +LC DLL E I +TK+NV KKQALT+ QI
Sbjct: 327 IALMEAKMTKLC-DLLEETIARTKDNVVKKQALTYEEMEAEREEEETQEDTESEDEEEQI 385
Query: 1324 YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAFERHFKEWRHQHGMRC 1503
YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN+SYWGRRAFERHFKEWRHQHGMRC
Sbjct: 386 YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRC 445
Query: 1504 LGIPNTKNFNEVTSIEEAQELWRKIQQRQGVNKWRPXXXXXXXXXXGNIYNKKTYTDLQR 1683
LGIPNTKNFNE+TSIEEA+ELW+KIQQRQGVNKWRP GNIYNKKTYTDLQR
Sbjct: 446 LGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQR 505
Query: 1684 QGLL 1695
QGL+
Sbjct: 506 QGLI 509
Score = 296 bits (758), Expect(3) = 0.0
Identities = 139/208 (66%), Positives = 169/208 (81%), Gaps = 1/208 (0%)
Frame = +2
Query: 269 VEIYEDKDSARKDEIAALGGQSGN-TNVFGAFYDRLKEIREYHRRHPSARVIDASEDYDE 445
+ IYED D+ARKDEIAALGGQ+ NVF AFYDRLKEIREYHR+HP ARV+DA++DY+
Sbjct: 59 IGIYEDSDNARKDEIAALGGQTATGINVFSAFYDRLKEIREYHRKHPVARVVDANDDYET 118
Query: 446 LLKDEPLVEFSGEEGYGRYFDMHELYNEYINSKFGKLVEYSTYLDIFSQTHEIPRNLKLT 625
LL +E +EFSGEE GRY D+HELY +Y+NSKFG+ +EYS YLD+FS T +IPR +K+T
Sbjct: 119 LLNEELQIEFSGEEALGRYLDLHELYYQYVNSKFGEPIEYSAYLDVFSDTDKIPRKMKMT 178
Query: 626 GAYKDYLEHLLEYLIHFFQRIEPLQDLDRFFSKVESEFEELWANGNVEGWENKGLENGHI 805
Y++YL +LLEYL++FFQR EPLQDLDR SKV +EFEE WA G V+GWEN ENGH+
Sbjct: 179 RQYREYLANLLEYLLYFFQRTEPLQDLDRILSKVTTEFEESWAVGKVQGWENDNQENGHV 238
Query: 806 SSHEALIDLDYYSTMEELMEVGPGKLKE 889
+ A IDLDYYST+EELMEVGP +LKE
Sbjct: 239 LAEHATIDLDYYSTVEELMEVGPERLKE 266
Score = 97.1 bits (240), Expect(3) = 0.0
Identities = 46/59 (77%), Positives = 57/59 (96%)
Frame = +3
Query: 45 MSSTLLEVTRSSHEEVERLERLIVKDLQKEPASSRERLFQNHRVRNMIDSITSTTHKLV 221
MSST+LEVTR++HEEVERLERLIVK+LQ +PAS++ERL+Q+HRVRNMID+ITSTT KL+
Sbjct: 1 MSSTVLEVTRAAHEEVERLERLIVKELQNDPASNKERLYQSHRVRNMIDTITSTTEKLI 59
>ref|XP_003526707.1| PREDICTED: splicing factor 3A subunit 3-like [Glycine max]
Length = 509
Score = 368 bits (944), Expect(3) = 0.0
Identities = 175/244 (71%), Positives = 196/244 (80%)
Frame = +1
Query: 964 ALSALGLKSGGTVKERAERLFLTKHTPLEQLDKKHFLKGSCGVKQNGTAAVSERTGDLKN 1143
AL+ALGLK+GGTV++RAERLFLTKHTPLE+LD+KHF KG+CGV++NG AAV + G+ K
Sbjct: 267 ALAALGLKTGGTVQQRAERLFLTKHTPLEKLDRKHFAKGACGVEKNGVAAVPQEDGNSKE 326
Query: 1144 IALTEAKLKRLCEDLLNEIIVQTKENVEKKQALTFXXXXXXXXXXXXXXXXXXXXXXXQI 1323
IAL EAK+ +LC LL E I +TK+NV KKQALT+ QI
Sbjct: 327 IALMEAKMTKLCH-LLEETIARTKDNVVKKQALTYEEMEAEREEEETQEDSESEDEEQQI 385
Query: 1324 YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAFERHFKEWRHQHGMRC 1503
YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN+SYWGRRAFERHFKEWRHQHGMRC
Sbjct: 386 YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRC 445
Query: 1504 LGIPNTKNFNEVTSIEEAQELWRKIQQRQGVNKWRPXXXXXXXXXXGNIYNKKTYTDLQR 1683
LGIPNTKNFNE+TSIEEA+ELW+KIQQRQGVNKWRP GNIYNKKTYTDLQR
Sbjct: 446 LGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQR 505
Query: 1684 QGLL 1695
QGL+
Sbjct: 506 QGLI 509
Score = 294 bits (753), Expect(3) = 0.0
Identities = 137/208 (65%), Positives = 168/208 (80%), Gaps = 1/208 (0%)
Frame = +2
Query: 269 VEIYEDKDSARKDEIAALGGQSGN-TNVFGAFYDRLKEIREYHRRHPSARVIDASEDYDE 445
+ +YED D+ARKDEIAALGGQ+ NVF AFYDRLKEIREYHR+HP ARV+DA++DY+
Sbjct: 59 IGVYEDNDNARKDEIAALGGQTATGINVFSAFYDRLKEIREYHRKHPVARVVDANDDYET 118
Query: 446 LLKDEPLVEFSGEEGYGRYFDMHELYNEYINSKFGKLVEYSTYLDIFSQTHEIPRNLKLT 625
LL +EP +EFSGEE GRY D+HELY +Y+NSKFG+ +EYS YLD+FS T +IPR +K+T
Sbjct: 119 LLNEEPQIEFSGEESLGRYLDLHELYYQYVNSKFGEPIEYSAYLDVFSDTDKIPRKMKMT 178
Query: 626 GAYKDYLEHLLEYLIHFFQRIEPLQDLDRFFSKVESEFEELWANGNVEGWENKGLENGHI 805
Y++YL +LLEYL++FFQR EPLQDLDR SKV +EFEE W G V+ WEN ENGH+
Sbjct: 179 RQYREYLANLLEYLLYFFQRTEPLQDLDRILSKVTTEFEESWVVGKVQRWENDNQENGHV 238
Query: 806 SSHEALIDLDYYSTMEELMEVGPGKLKE 889
+ A IDLDYYST+EELMEVGP +LKE
Sbjct: 239 LAEHAPIDLDYYSTIEELMEVGPERLKE 266
Score = 97.1 bits (240), Expect(3) = 0.0
Identities = 46/59 (77%), Positives = 57/59 (96%)
Frame = +3
Query: 45 MSSTLLEVTRSSHEEVERLERLIVKDLQKEPASSRERLFQNHRVRNMIDSITSTTHKLV 221
MSST+LEVTR++HEEVERLERLIVK+LQ +PAS++ERL+Q+HRVRNMID+ITSTT KL+
Sbjct: 1 MSSTVLEVTRAAHEEVERLERLIVKELQNDPASNKERLYQSHRVRNMIDTITSTTEKLI 59
>ref|XP_002317774.1| predicted protein [Populus trichocarpa] gi|222858447|gb|EEE95994.1|
predicted protein [Populus trichocarpa]
Length = 509
Score = 358 bits (920), Expect(3) = 0.0
Identities = 174/244 (71%), Positives = 194/244 (79%)
Frame = +1
Query: 964 ALSALGLKSGGTVKERAERLFLTKHTPLEQLDKKHFLKGSCGVKQNGTAAVSERTGDLKN 1143
AL+ALGLKSGGTV++RAERLFLTK TPLE+LDKKHF+KGS G + NG AA S+ + K
Sbjct: 267 ALAALGLKSGGTVQQRAERLFLTKDTPLEKLDKKHFVKGSRGSEPNGGAATSKEVDNSKE 326
Query: 1144 IALTEAKLKRLCEDLLNEIIVQTKENVEKKQALTFXXXXXXXXXXXXXXXXXXXXXXXQI 1323
IAL EAK+ +LC DLL+E IV+TKENV KKQALT+ QI
Sbjct: 327 IALMEAKINKLC-DLLDETIVRTKENVVKKQALTYDEMEAEREEEETQADTESDDDEQQI 385
Query: 1324 YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAFERHFKEWRHQHGMRC 1503
YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN+SYWGRRAFERHFKEWRHQHGMRC
Sbjct: 386 YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRC 445
Query: 1504 LGIPNTKNFNEVTSIEEAQELWRKIQQRQGVNKWRPXXXXXXXXXXGNIYNKKTYTDLQR 1683
LGIPNTKNFNE+TSI+EAQELW+ IQ+RQGVNKWRP GNIYN+KTYTDLQR
Sbjct: 446 LGIPNTKNFNEITSIKEAQELWKGIQERQGVNKWRPDLEEEYEDKEGNIYNRKTYTDLQR 505
Query: 1684 QGLL 1695
QGL+
Sbjct: 506 QGLI 509
Score = 304 bits (779), Expect(3) = 0.0
Identities = 141/208 (67%), Positives = 174/208 (83%), Gaps = 1/208 (0%)
Frame = +2
Query: 269 VEIYEDKDSARKDEIAALGGQSG-NTNVFGAFYDRLKEIREYHRRHPSARVIDASEDYDE 445
VE+YEDKD+AR+DEIAALGGQ+ TNVF AFYDRLKEIREYHRRHP+ARV+DA+EDY+
Sbjct: 59 VEVYEDKDNARRDEIAALGGQTAMGTNVFSAFYDRLKEIREYHRRHPAARVVDANEDYEA 118
Query: 446 LLKDEPLVEFSGEEGYGRYFDMHELYNEYINSKFGKLVEYSTYLDIFSQTHEIPRNLKLT 625
+LK+EP++EF+GEE +G+Y DMHELYN+Y N KF K +EYSTYLDIFSQ + +P LK +
Sbjct: 119 MLKEEPVIEFTGEEAFGKYLDMHELYNQYNNLKFEKPIEYSTYLDIFSQPNIVPHKLKFS 178
Query: 626 GAYKDYLEHLLEYLIHFFQRIEPLQDLDRFFSKVESEFEELWANGNVEGWENKGLENGHI 805
Y++Y+E+LLEYL++FFQR EPLQDLDR FSKV +EFEE W N V+GWE ENGH+
Sbjct: 179 RRYREYMENLLEYLVYFFQRTEPLQDLDRIFSKVTTEFEEQWENDAVQGWEKTSQENGHL 238
Query: 806 SSHEALIDLDYYSTMEELMEVGPGKLKE 889
S+ +IDLD+YST+EEL EVGP KLKE
Sbjct: 239 SADHTVIDLDFYSTVEELKEVGPEKLKE 266
Score = 95.9 bits (237), Expect(3) = 0.0
Identities = 47/59 (79%), Positives = 55/59 (93%)
Frame = +3
Query: 45 MSSTLLEVTRSSHEEVERLERLIVKDLQKEPASSRERLFQNHRVRNMIDSITSTTHKLV 221
MSS LLEVTR+SHEEVERLERLIVKDLQ EPA++++RLFQ+HRVRNMID+I +TT KLV
Sbjct: 1 MSSNLLEVTRASHEEVERLERLIVKDLQNEPANNKDRLFQSHRVRNMIDNIITTTEKLV 59
>ref|XP_004145709.1| PREDICTED: splicing factor 3A subunit 3-like [Cucumis sativus]
gi|449507630|ref|XP_004163087.1| PREDICTED: LOW QUALITY
PROTEIN: splicing factor 3A subunit 3-like [Cucumis
sativus]
Length = 508
Score = 350 bits (897), Expect(3) = 0.0
Identities = 167/243 (68%), Positives = 191/243 (78%)
Frame = +1
Query: 967 LSALGLKSGGTVKERAERLFLTKHTPLEQLDKKHFLKGSCGVKQNGTAAVSERTGDLKNI 1146
L ALGLK+GGTV++RAERLFLTKHTPL+ LDKKHF K S QNG+A S+ +LK +
Sbjct: 267 LMALGLKTGGTVQQRAERLFLTKHTPLQLLDKKHFAKLSRQPIQNGSAVASQNNENLKQV 326
Query: 1147 ALTEAKLKRLCEDLLNEIIVQTKENVEKKQALTFXXXXXXXXXXXXXXXXXXXXXXXQIY 1326
AL EAK+++LC DLL+E I +TK+N+ KKQALT+ QIY
Sbjct: 327 ALMEAKIEKLC-DLLDETIARTKDNIVKKQALTYEEIEAEREEEETQAESESDDEEQQIY 385
Query: 1327 NPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAFERHFKEWRHQHGMRCL 1506
NPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN+SYWGRRAFERHFKEWRHQHGMRCL
Sbjct: 386 NPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCL 445
Query: 1507 GIPNTKNFNEVTSIEEAQELWRKIQQRQGVNKWRPXXXXXXXXXXGNIYNKKTYTDLQRQ 1686
GIPNTKNFNE+TSIEEA++LW++IQ+RQGVNKWRP GNIYNKKTYTDLQRQ
Sbjct: 446 GIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQ 505
Query: 1687 GLL 1695
GL+
Sbjct: 506 GLI 508
Score = 310 bits (794), Expect(3) = 0.0
Identities = 149/208 (71%), Positives = 176/208 (84%), Gaps = 1/208 (0%)
Frame = +2
Query: 269 VEIYEDKDSARKDEIAALGGQS-GNTNVFGAFYDRLKEIREYHRRHPSARVIDASEDYDE 445
VEIYEDKDSARKDEIAALGGQ+ TNVF AFYDRLKEIREYHRRHP+ARV+D SED D
Sbjct: 59 VEIYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSED-DG 117
Query: 446 LLKDEPLVEFSGEEGYGRYFDMHELYNEYINSKFGKLVEYSTYLDIFSQTHEIPRNLKLT 625
LLK+EP +EFSGEE +GRY D+HELYN+YINSKFG+ +EYS+YLD+FSQ +I + LK +
Sbjct: 118 LLKEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISQKLKFS 177
Query: 626 GAYKDYLEHLLEYLIHFFQRIEPLQDLDRFFSKVESEFEELWANGNVEGWENKGLENGHI 805
Y++YLE+LL YLI+FFQR EPLQDLDR FSKVESEFEE W G +EGWEN +NGH
Sbjct: 178 RQYREYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWVIGTIEGWENTSQDNGHD 237
Query: 806 SSHEALIDLDYYSTMEELMEVGPGKLKE 889
S+ +LIDLDYYST+EEL+E+GP +LKE
Sbjct: 238 SAQHSLIDLDYYSTVEELVELGPERLKE 265
Score = 95.1 bits (235), Expect(3) = 0.0
Identities = 48/59 (81%), Positives = 54/59 (91%)
Frame = +3
Query: 45 MSSTLLEVTRSSHEEVERLERLIVKDLQKEPASSRERLFQNHRVRNMIDSITSTTHKLV 221
MSSTLLEVTRSSHEEVERLERLIVK+LQ EPAS ++RL Q+HRVR+MID+I STT KLV
Sbjct: 1 MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRSMIDTIMSTTEKLV 59