BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00001423
         (1350 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group] g...   520   e-145
dbj|BAK05040.1| predicted protein [Hordeum vulgare subsp. vulgare]    520   e-145
ref|XP_003578512.1| PREDICTED: transcription initiation factor I...   519   e-145
ref|XP_002460572.1| hypothetical protein SORBIDRAFT_02g031020 [S...   517   e-144
ref|NP_001149721.1| transcription initiation factor IIB [Zea may...   512   e-142

>ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group]
            gi|21362998|sp|Q8W0W3.1|TF2B_ORYSJ RecName:
            Full=Transcription initiation factor IIB; AltName:
            Full=General transcription factor TFIIB
            gi|18481632|gb|AAL73491.1|AF464908_1 general
            transcription factor TFIIB [Oryza sativa]
            gi|50725809|dbj|BAD33339.1| Transcription initiation
            factor IIB [Oryza sativa Japonica Group]
            gi|50726577|dbj|BAD34211.1| Transcription initiation
            factor IIB [Oryza sativa Japonica Group]
            gi|113632008|dbj|BAF25689.1| Os09g0534800 [Oryza sativa
            Japonica Group] gi|125564497|gb|EAZ09877.1| hypothetical
            protein OsI_32170 [Oryza sativa Indica Group]
            gi|125606444|gb|EAZ45480.1| hypothetical protein
            OsJ_30135 [Oryza sativa Japonica Group]
            gi|347737122|gb|AEP20532.1| transcription factor [Oryza
            sativa Japonica Group]
          Length = 312

 Score =  520 bits (1338), Expect = e-145
 Identities = 266/337 (78%), Positives = 283/337 (83%)
 Frame = -2

Query: 1259 MADMFCPECKKSTEVVLDHSAGDTVCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1080
            M+D FCP+CKK TEV  DHSAGDTVC                                  
Sbjct: 1    MSDSFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETS------------------ 42

Query: 1079 XXXXXXXXXEWRTFANESGENDPVRVGGPSNPLLTDGGLSTVISKPNGASGDFLSSSLGR 900
                     EWRTFANES +NDPVRVGGP+NPLLTDGGLSTVI+KPNGA G+FLSSSLGR
Sbjct: 43   ---------EWRTFANESSDNDPVRVGGPTNPLLTDGGLSTVIAKPNGAQGEFLSSSLGR 93

Query: 899  WQNRGSNPDRSLIQAFKTIAIMCDRLGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAA 720
            WQNRGSNPDRSLI AF+TIA M DRLGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAA
Sbjct: 94   WQNRGSNPDRSLILAFRTIANMADRLGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAA 153

Query: 719  CLYIACRQEDRPRTVKEICSVANGATKKEVGRAKEFIVKQLEVEMGQSMEMGTIHAGDFL 540
            CLYIACRQEDRPRTVKEICSVANGATKKE+GRAKEFIVKQLEVEMGQSMEMGTIHAGDFL
Sbjct: 154  CLYIACRQEDRPRTVKEICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFL 213

Query: 539  RRFCSHLGMNNAAIKAAQEAVQKSEELDIRRSPISIAAAVIYMITQLSDEKKPLRDISLA 360
            RRFCS LGMNN A+KAAQEAVQ+SEELDIRRSPISIAAAVIYMITQLSD+KKPL+DISLA
Sbjct: 214  RRFCSTLGMNNQAVKAAQEAVQRSEELDIRRSPISIAAAVIYMITQLSDDKKPLKDISLA 273

Query: 359  TGVAEGTIRNSYKDLYPYASRLIPSSFAKEDDLRNLC 249
            TGVAEGTIRNSYKDLYPYASRLIP+++AKE+DL+NLC
Sbjct: 274  TGVAEGTIRNSYKDLYPYASRLIPNTYAKEEDLKNLC 310


>dbj|BAK05040.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 312

 Score =  520 bits (1338), Expect = e-145
 Identities = 266/337 (78%), Positives = 283/337 (83%)
 Frame = -2

Query: 1259 MADMFCPECKKSTEVVLDHSAGDTVCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1080
            M+D +CP+CKK TEV  DHSAGDTVC                                  
Sbjct: 1    MSDTYCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETS------------------ 42

Query: 1079 XXXXXXXXXEWRTFANESGENDPVRVGGPSNPLLTDGGLSTVISKPNGASGDFLSSSLGR 900
                     EWRTFANES +NDPVRVGGPSNPLLTDGGLSTVI+KPNGA GDFLSSSLGR
Sbjct: 43   ---------EWRTFANESNDNDPVRVGGPSNPLLTDGGLSTVIAKPNGAHGDFLSSSLGR 93

Query: 899  WQNRGSNPDRSLIQAFKTIAIMCDRLGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAA 720
            WQNRGSNPDRSLI AF+TIA M DRLGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAA
Sbjct: 94   WQNRGSNPDRSLILAFRTIANMADRLGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAA 153

Query: 719  CLYIACRQEDRPRTVKEICSVANGATKKEVGRAKEFIVKQLEVEMGQSMEMGTIHAGDFL 540
            CLYIACRQEDRPRTVKEICSVANGATKKE+GRAKEFIVKQLEVEMGQSMEMGTIHAGDFL
Sbjct: 154  CLYIACRQEDRPRTVKEICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFL 213

Query: 539  RRFCSHLGMNNAAIKAAQEAVQKSEELDIRRSPISIAAAVIYMITQLSDEKKPLRDISLA 360
            RRFCS LGMNN A+KAAQEAVQ+SEELDIRRSPISIAAAVIYMITQLS++KKPL+DISLA
Sbjct: 214  RRFCSTLGMNNTAVKAAQEAVQRSEELDIRRSPISIAAAVIYMITQLSEDKKPLKDISLA 273

Query: 359  TGVAEGTIRNSYKDLYPYASRLIPSSFAKEDDLRNLC 249
            TGVAEGTIRNSYKDLYPYA+RLIP+S+AKE+DL+NLC
Sbjct: 274  TGVAEGTIRNSYKDLYPYAARLIPNSYAKEEDLKNLC 310


>ref|XP_003578512.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
            distachyon]
          Length = 312

 Score =  519 bits (1337), Expect = e-145
 Identities = 266/337 (78%), Positives = 283/337 (83%)
 Frame = -2

Query: 1259 MADMFCPECKKSTEVVLDHSAGDTVCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1080
            M+D FCP+CKK TEV  DHSAGDTVC                                  
Sbjct: 1    MSDTFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETS------------------ 42

Query: 1079 XXXXXXXXXEWRTFANESGENDPVRVGGPSNPLLTDGGLSTVISKPNGASGDFLSSSLGR 900
                     EWRTFANES +NDPVRVGGPSNPLLTDGGLSTVI+KPNGA G+FLSSSLGR
Sbjct: 43   ---------EWRTFANESNDNDPVRVGGPSNPLLTDGGLSTVIAKPNGAHGEFLSSSLGR 93

Query: 899  WQNRGSNPDRSLIQAFKTIAIMCDRLGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAA 720
            WQNRGSNPDRSLI AF+TIA M DRLGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAA
Sbjct: 94   WQNRGSNPDRSLILAFRTIANMADRLGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAA 153

Query: 719  CLYIACRQEDRPRTVKEICSVANGATKKEVGRAKEFIVKQLEVEMGQSMEMGTIHAGDFL 540
            CLYIACRQEDRPRTVKEICSVANGATKKE+GRAKEFIVKQLEVEMGQSMEMGTIHAGDFL
Sbjct: 154  CLYIACRQEDRPRTVKEICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFL 213

Query: 539  RRFCSHLGMNNAAIKAAQEAVQKSEELDIRRSPISIAAAVIYMITQLSDEKKPLRDISLA 360
            RRFCS LGMNN A+KAAQEAVQ+SEELDIRRSPISIAAAVIYMITQLS++KKPL+DISLA
Sbjct: 214  RRFCSTLGMNNTAVKAAQEAVQRSEELDIRRSPISIAAAVIYMITQLSEDKKPLKDISLA 273

Query: 359  TGVAEGTIRNSYKDLYPYASRLIPSSFAKEDDLRNLC 249
            TGVAEGTIRNSYKDLYPYASRLIP+++AKE+DL+NLC
Sbjct: 274  TGVAEGTIRNSYKDLYPYASRLIPNTYAKEEDLKNLC 310


>ref|XP_002460572.1| hypothetical protein SORBIDRAFT_02g031020 [Sorghum bicolor]
            gi|241923949|gb|EER97093.1| hypothetical protein
            SORBIDRAFT_02g031020 [Sorghum bicolor]
          Length = 312

 Score =  517 bits (1332), Expect = e-144
 Identities = 264/337 (78%), Positives = 283/337 (83%)
 Frame = -2

Query: 1259 MADMFCPECKKSTEVVLDHSAGDTVCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1080
            M+D FCP+CKK TEV  DHSAGDTVC                                  
Sbjct: 1    MSDSFCPDCKKQTEVAFDHSAGDTVCTECGLVLEAHSVDETS------------------ 42

Query: 1079 XXXXXXXXXEWRTFANESGENDPVRVGGPSNPLLTDGGLSTVISKPNGASGDFLSSSLGR 900
                     EWRTFANES +NDPVRVGGP+NPLLTDGGLSTVI+KPNGA G+FLSSSLGR
Sbjct: 43   ---------EWRTFANESNDNDPVRVGGPTNPLLTDGGLSTVIAKPNGAQGEFLSSSLGR 93

Query: 899  WQNRGSNPDRSLIQAFKTIAIMCDRLGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAA 720
            WQNRGSNPDRSLI AF+TIA M DRLGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAA
Sbjct: 94   WQNRGSNPDRSLILAFRTIANMADRLGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAA 153

Query: 719  CLYIACRQEDRPRTVKEICSVANGATKKEVGRAKEFIVKQLEVEMGQSMEMGTIHAGDFL 540
            CLYIACRQEDRPRTVKEICSVANGATKKE+GRAKEFIVKQLEVEMGQSMEMGTIHAGDFL
Sbjct: 154  CLYIACRQEDRPRTVKEICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFL 213

Query: 539  RRFCSHLGMNNAAIKAAQEAVQKSEELDIRRSPISIAAAVIYMITQLSDEKKPLRDISLA 360
            RRFCS LGMNN A+KAAQEAVQ+SEELDIRRSPISIAAAVIYMITQLS++KKPL+DISLA
Sbjct: 214  RRFCSTLGMNNQAVKAAQEAVQRSEELDIRRSPISIAAAVIYMITQLSEDKKPLKDISLA 273

Query: 359  TGVAEGTIRNSYKDLYPYASRLIPSSFAKEDDLRNLC 249
            TGVAEGTIRNSYKDLYPYA+RLIP+++AKE+DL+NLC
Sbjct: 274  TGVAEGTIRNSYKDLYPYAARLIPNTYAKEEDLKNLC 310


>ref|NP_001149721.1| transcription initiation factor IIB [Zea mays]
            gi|195629762|gb|ACG36522.1| transcription initiation
            factor IIB [Zea mays] gi|414590059|tpg|DAA40630.1| TPA:
            transcription initiation factor IIB [Zea mays]
          Length = 312

 Score =  512 bits (1318), Expect = e-142
 Identities = 261/337 (77%), Positives = 281/337 (83%)
 Frame = -2

Query: 1259 MADMFCPECKKSTEVVLDHSAGDTVCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1080
            M+D +CP+CKK TEV  DHSAGDTVC                                  
Sbjct: 1    MSDSYCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETS------------------ 42

Query: 1079 XXXXXXXXXEWRTFANESGENDPVRVGGPSNPLLTDGGLSTVISKPNGASGDFLSSSLGR 900
                     EWRTFANES +NDPVRVGGPSNPLLTDGGLSTVI+KPNGA GDFLSSSLGR
Sbjct: 43   ---------EWRTFANESNDNDPVRVGGPSNPLLTDGGLSTVIAKPNGAQGDFLSSSLGR 93

Query: 899  WQNRGSNPDRSLIQAFKTIAIMCDRLGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAA 720
            WQNRGSNPDRSLI AF+TIA M DRLGLVATIKDRANEI+KK+EDLKSIRGRNQDAILAA
Sbjct: 94   WQNRGSNPDRSLILAFRTIANMADRLGLVATIKDRANEIFKKIEDLKSIRGRNQDAILAA 153

Query: 719  CLYIACRQEDRPRTVKEICSVANGATKKEVGRAKEFIVKQLEVEMGQSMEMGTIHAGDFL 540
            CLYIACRQEDRPRTVKEICSVANGATKKE+GRAKEFIVKQLEVEMGQSMEMGTIHAGDFL
Sbjct: 154  CLYIACRQEDRPRTVKEICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFL 213

Query: 539  RRFCSHLGMNNAAIKAAQEAVQKSEELDIRRSPISIAAAVIYMITQLSDEKKPLRDISLA 360
            RRFCS LGM N A+ AA+EAVQ+SEELDIRRSPISIAAAVIYMITQLS++KKPL+DISLA
Sbjct: 214  RRFCSTLGMTNQAVNAAKEAVQRSEELDIRRSPISIAAAVIYMITQLSEDKKPLKDISLA 273

Query: 359  TGVAEGTIRNSYKDLYPYASRLIPSSFAKEDDLRNLC 249
            TGVAEGTIRNSYKDLYPYASRLIP+++AKE+DL+NLC
Sbjct: 274  TGVAEGTIRNSYKDLYPYASRLIPNTYAKEEDLKNLC 310