BLASTX nr result

ID: Coptis25_contig00001407 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00001407
         (1604 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515074.1| pyruvate dehydrogenase, putative [Ricinus co...   681   0.0  
gb|ACF17669.1| putative pyruvate dehydrogenase E1 alpha subunit ...   678   0.0  
gb|ABK95003.1| unknown [Populus trichocarpa]                          673   0.0  
ref|XP_003548126.1| PREDICTED: pyruvate dehydrogenase E1 compone...   662   0.0  
ref|XP_002267676.1| PREDICTED: pyruvate dehydrogenase E1 compone...   662   0.0  

>ref|XP_002515074.1| pyruvate dehydrogenase, putative [Ricinus communis]
            gi|223545554|gb|EEF47058.1| pyruvate dehydrogenase,
            putative [Ricinus communis]
          Length = 433

 Score =  681 bits (1757), Expect = 0.0
 Identities = 344/436 (78%), Positives = 370/436 (84%), Gaps = 2/436 (0%)
 Frame = -2

Query: 1516 MASSYSAIRTIQPLSFPTSRSQEK--PLFHPINQKTSSFIGSTHKXXXXXXXXXXXXXXX 1343
            MA+++SA   IQPL    +RS  K  PLF P+ + TSSFIGST K               
Sbjct: 1    MATAFSATHLIQPLPVDNTRSYNKHQPLFDPL-KTTSSFIGSTSKLRFSALPKLNHVSSF 59

Query: 1342 XXXXXXXXXXXXXXXKTTGPVSNLLITKEEGLVLYEDMVLGRTFEDMCAQMYYRGKMFGF 1163
                           K     SNLLITKEEGLVLYEDMVLGR FEDMCAQMYYRGKMFGF
Sbjct: 60   RRSAIVAVSEAVKEKKLKS-TSNLLITKEEGLVLYEDMVLGRAFEDMCAQMYYRGKMFGF 118

Query: 1162 VHLYNGQEAVSTGFIKLLKQEDSVVSTYRDHVHALSKGVPASAVMSELFGKKTGCCRGQG 983
            VHLYNGQEAVSTGFIKLLK+EDSVVSTYRDHVHALSKGVPA AVMSELFGK TGCCRGQG
Sbjct: 119  VHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKTTGCCRGQG 178

Query: 982  GSMHMFSKEHNVLGGFAFIGEGIPVATGAAFTSKYKREVLKEADCDHVTLAFFGDGTCNN 803
            GSMHMFSK+HNVLGGFAFIGEGIPVATGAAFTSKY+REVLKE DCDHVTLAFFGDGTCNN
Sbjct: 179  GSMHMFSKDHNVLGGFAFIGEGIPVATGAAFTSKYRREVLKE-DCDHVTLAFFGDGTCNN 237

Query: 802  GQFFECLNMAQLWKLPIVFVVENNLWAIGMSHLRATSDPEIYKKGPAFGMPGVHVDGMDV 623
            GQFFECLNMA LWKLPIVFVVENNLWAIGMSHLRATSDP+I+KKGPAFGMPGVHVDGMDV
Sbjct: 238  GQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIWKKGPAFGMPGVHVDGMDV 297

Query: 622  LKVREVAKEAIGRARRGEGPSLIECETYRFRGHSLADPDELRDAGEKNHYNTRCPIAALK 443
            LKVREVAKEAIGRARRGEGP+L+ECETYRFRGHSLADPDELRD  EK HY  R PI +LK
Sbjct: 298  LKVREVAKEAIGRARRGEGPTLVECETYRFRGHSLADPDELRDPAEKAHYAARDPITSLK 357

Query: 442  KYIFENNLATEADLKTIDKKIDELIEEAVEFAEASPLPPRSQLLENVFADPKGFGIGPDG 263
            KYI EN+LA+EA+LK I+KKIDE++E++VEFA+ SP+PPRSQLLENVFADPKGFGIGPDG
Sbjct: 358  KYIIENSLASEAELKAIEKKIDEVVEDSVEFADESPVPPRSQLLENVFADPKGFGIGPDG 417

Query: 262  KYRCEDPKFTEGTAQV 215
            +YRCEDPKFT+GTA V
Sbjct: 418  RYRCEDPKFTQGTAHV 433


>gb|ACF17669.1| putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum]
          Length = 431

 Score =  678 bits (1749), Expect = 0.0
 Identities = 339/435 (77%), Positives = 369/435 (84%), Gaps = 1/435 (0%)
 Frame = -2

Query: 1516 MASSYSAIRTIQPLSFPTSRSQEKPLFHPINQKTSSFIG-STHKXXXXXXXXXXXXXXXX 1340
            MA+S+   + + PL+  ++RS +KPL   +    SSF+G S HK                
Sbjct: 1    MATSFFTAKVL-PLN--STRSADKPLLGQV-LLPSSFLGPSAHKLSLNNAFSLQSQRRSN 56

Query: 1339 XXXXXXXXXXXXXXKTTGPVSNLLITKEEGLVLYEDMVLGRTFEDMCAQMYYRGKMFGFV 1160
                          K+   +SNLLITKEEGL LYEDMVLGR FEDMCAQMYYRGKMFGFV
Sbjct: 57   AVVAVSDVVKDNKSKSKSSISNLLITKEEGLELYEDMVLGRAFEDMCAQMYYRGKMFGFV 116

Query: 1159 HLYNGQEAVSTGFIKLLKQEDSVVSTYRDHVHALSKGVPASAVMSELFGKKTGCCRGQGG 980
            HLYNGQEAVSTGFIKLLK+EDSVVSTYRDHVHALSKGVPA  VMSELFGK TGCCRGQGG
Sbjct: 117  HLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARQVMSELFGKTTGCCRGQGG 176

Query: 979  SMHMFSKEHNVLGGFAFIGEGIPVATGAAFTSKYKREVLKEADCDHVTLAFFGDGTCNNG 800
            SMHMFSKEHNVLGGFAFIGEGIPVATGAAFTSKY+REVLKEADCDHVTLAFFGDGTCNNG
Sbjct: 177  SMHMFSKEHNVLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNG 236

Query: 799  QFFECLNMAQLWKLPIVFVVENNLWAIGMSHLRATSDPEIYKKGPAFGMPGVHVDGMDVL 620
            QF+ECLNMA LWKLPI+FVVENNLWAIGMSHLR+TSDPEI+KKGPAFGMPGVHVDGMDVL
Sbjct: 237  QFYECLNMAALWKLPIIFVVENNLWAIGMSHLRSTSDPEIWKKGPAFGMPGVHVDGMDVL 296

Query: 619  KVREVAKEAIGRARRGEGPSLIECETYRFRGHSLADPDELRDAGEKNHYNTRCPIAALKK 440
            KVREVA EA+GRARRGEGP+L+ECETYRFRGHSLADPDELRD  EKNHY TR PI ALKK
Sbjct: 297  KVREVANEAVGRARRGEGPTLVECETYRFRGHSLADPDELRDPAEKNHYATRDPITALKK 356

Query: 439  YIFENNLATEADLKTIDKKIDELIEEAVEFAEASPLPPRSQLLENVFADPKGFGIGPDGK 260
            Y+FENNL  EA+LK IDKKIDEL+EE+VEFA+ASP+P R+QLLENVFADP+GFGIGPDG+
Sbjct: 357  YMFENNLVNEAELKAIDKKIDELVEESVEFADASPVPARNQLLENVFADPRGFGIGPDGR 416

Query: 259  YRCEDPKFTEGTAQV 215
            YRCEDPKFTEGTAQV
Sbjct: 417  YRCEDPKFTEGTAQV 431


>gb|ABK95003.1| unknown [Populus trichocarpa]
          Length = 442

 Score =  673 bits (1736), Expect = 0.0
 Identities = 339/439 (77%), Positives = 367/439 (83%), Gaps = 6/439 (1%)
 Frame = -2

Query: 1513 ASSYSAIRTIQPLSF--PTSRSQEK--PLFHPINQ--KTSSFIGSTHKXXXXXXXXXXXX 1352
            AS++SA +  QP S    TSRS EK    F P+     +SSF+GST K            
Sbjct: 4    ASAFSATKFTQPFSLNGTTSRSHEKHQSFFDPLRTAPSSSSFLGSTRKLRLSSASKSKLV 63

Query: 1351 XXXXXXXXXXXXXXXXXXKTTGPVSNLLITKEEGLVLYEDMVLGRTFEDMCAQMYYRGKM 1172
                              K     +NLLITKEEGL +YEDM+LGR FEDMCAQMYYRGKM
Sbjct: 64   ANPNRRSAVVAVSDVVKEKKVKSTTNLLITKEEGLEVYEDMILGRAFEDMCAQMYYRGKM 123

Query: 1171 FGFVHLYNGQEAVSTGFIKLLKQEDSVVSTYRDHVHALSKGVPASAVMSELFGKKTGCCR 992
            FGFVHLYNGQEAVSTGFIKLLK+EDSVVSTYRDHVHALSKGVPA AVMSELFGK TGCCR
Sbjct: 124  FGFVHLYNGQEAVSTGFIKLLKREDSVVSTYRDHVHALSKGVPARAVMSELFGKTTGCCR 183

Query: 991  GQGGSMHMFSKEHNVLGGFAFIGEGIPVATGAAFTSKYKREVLKEADCDHVTLAFFGDGT 812
            GQGGSMHMFSKEHN++GGFAFIGEGIPVATGAAF+SKY+REVLKEADCDHVTLAFFGDGT
Sbjct: 184  GQGGSMHMFSKEHNLIGGFAFIGEGIPVATGAAFSSKYRREVLKEADCDHVTLAFFGDGT 243

Query: 811  CNNGQFFECLNMAQLWKLPIVFVVENNLWAIGMSHLRATSDPEIYKKGPAFGMPGVHVDG 632
            CNNGQFFECLNMA LWKLPIVFVVENNLWAIGMSH+RATSDPEI+KKGPAFGMPGVHVDG
Sbjct: 244  CNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHVRATSDPEIWKKGPAFGMPGVHVDG 303

Query: 631  MDVLKVREVAKEAIGRARRGEGPSLIECETYRFRGHSLADPDELRDAGEKNHYNTRCPIA 452
            MDVLKVREVAKEAIGRARRGEGP+L+ECETYRFRGHSLADPDELRD  EK  Y  R PIA
Sbjct: 304  MDVLKVREVAKEAIGRARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPIA 363

Query: 451  ALKKYIFENNLATEADLKTIDKKIDELIEEAVEFAEASPLPPRSQLLENVFADPKGFGIG 272
            ALKKY+ EN+LA+EA+LK I+KKIDE++EEAVEFA+ SP P RSQLLENVFADPKGFGIG
Sbjct: 364  ALKKYMIENSLASEAELKAIEKKIDEVVEEAVEFADESPHPSRSQLLENVFADPKGFGIG 423

Query: 271  PDGKYRCEDPKFTEGTAQV 215
            PDG+YRCEDPKFTEGTA+V
Sbjct: 424  PDGRYRCEDPKFTEGTARV 442


>ref|XP_003548126.1| PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-like
            [Glycine max]
          Length = 432

 Score =  662 bits (1709), Expect = 0.0
 Identities = 327/426 (76%), Positives = 355/426 (83%), Gaps = 4/426 (0%)
 Frame = -2

Query: 1480 PLSFPTSRSQEKPLF----HPINQKTSSFIGSTHKXXXXXXXXXXXXXXXXXXXXXXXXX 1313
            PL+  T RS +KPL     H     +SSF+GST K                         
Sbjct: 14   PLNSTTPRSNDKPLSFSFDHSKPNPSSSFLGSTRKLLRFNALAKPHAHTRASSSPVAAVL 73

Query: 1312 XXXXXKTTGPVSNLLITKEEGLVLYEDMVLGRTFEDMCAQMYYRGKMFGFVHLYNGQEAV 1133
                       SNLL+TKEEGL LYEDM+LGR FED CA+MYYRGKMFGFVHLYNGQE V
Sbjct: 74   LER-------TSNLLVTKEEGLELYEDMILGRFFEDKCAEMYYRGKMFGFVHLYNGQETV 126

Query: 1132 STGFIKLLKQEDSVVSTYRDHVHALSKGVPASAVMSELFGKKTGCCRGQGGSMHMFSKEH 953
            STGFIKLLK+EDSVVSTYRDHVHALSKGVP+  VMSELFGK TGCCRGQGGSMHMFSKEH
Sbjct: 127  STGFIKLLKKEDSVVSTYRDHVHALSKGVPSREVMSELFGKATGCCRGQGGSMHMFSKEH 186

Query: 952  NVLGGFAFIGEGIPVATGAAFTSKYKREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMA 773
            N+LGGFAFIGEGIPVATGAAF+SKY+REVLK+ADCDHVTLAFFGDGTCNNGQF+ECLNMA
Sbjct: 187  NLLGGFAFIGEGIPVATGAAFSSKYRREVLKQADCDHVTLAFFGDGTCNNGQFYECLNMA 246

Query: 772  QLWKLPIVFVVENNLWAIGMSHLRATSDPEIYKKGPAFGMPGVHVDGMDVLKVREVAKEA 593
             LWKLPIVFVVENNLWAIGMSHLRATSDP+I+KKGPAFGMPGVHVDGMDVL+VREVAKEA
Sbjct: 247  ALWKLPIVFVVENNLWAIGMSHLRATSDPQIWKKGPAFGMPGVHVDGMDVLQVREVAKEA 306

Query: 592  IGRARRGEGPSLIECETYRFRGHSLADPDELRDAGEKNHYNTRCPIAALKKYIFENNLAT 413
            +GRARRGEGP+L+ECETYRFRGHSLADPDELRD  EK HY  R PI ALKKY+FENNLA 
Sbjct: 307  VGRARRGEGPTLVECETYRFRGHSLADPDELRDPAEKEHYAGRDPITALKKYLFENNLAN 366

Query: 412  EADLKTIDKKIDELIEEAVEFAEASPLPPRSQLLENVFADPKGFGIGPDGKYRCEDPKFT 233
            E +LKTI+KKIDE++E+AVEFA+ SPLPPRSQLLENVFADPKGFGIGPDG YRCEDPKFT
Sbjct: 367  EQELKTIEKKIDEILEDAVEFADKSPLPPRSQLLENVFADPKGFGIGPDGSYRCEDPKFT 426

Query: 232  EGTAQV 215
            +GTA V
Sbjct: 427  QGTAHV 432


>ref|XP_002267676.1| PREDICTED: pyruvate dehydrogenase E1 component subunit alpha [Vitis
            vinifera] gi|296089009|emb|CBI38712.3| unnamed protein
            product [Vitis vinifera]
          Length = 433

 Score =  662 bits (1708), Expect = 0.0
 Identities = 341/438 (77%), Positives = 363/438 (82%), Gaps = 4/438 (0%)
 Frame = -2

Query: 1516 MASSYSAIRTIQPLSFPTSRSQEKP--LFHPINQKTSSFIGSTHKXXXXXXXXXXXXXXX 1343
            MASS+ +   IQPL     RS +KP  LF  + + TS+F+GST K               
Sbjct: 1    MASSFLSSGIIQPLPL---RSPDKPQTLFDHL-KTTSTFLGSTSKLRSVSLSKPNLPNPH 56

Query: 1342 XXXXXXXXXXXXXXXKTTGPVSN--LLITKEEGLVLYEDMVLGRTFEDMCAQMYYRGKMF 1169
                           KT    S+  LLIT+EEGL LYEDMVLGR FEDMCAQMYYRGKMF
Sbjct: 57   RRSTVVAVSDVLKEKKTKSAASSSQLLITREEGLELYEDMVLGRAFEDMCAQMYYRGKMF 116

Query: 1168 GFVHLYNGQEAVSTGFIKLLKQEDSVVSTYRDHVHALSKGVPASAVMSELFGKKTGCCRG 989
            GFVHLYNGQEAVSTGFIKLLK+ED VVSTYRDHVHALSKGVPA AVMSELFGK TGCCRG
Sbjct: 117  GFVHLYNGQEAVSTGFIKLLKKEDCVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRG 176

Query: 988  QGGSMHMFSKEHNVLGGFAFIGEGIPVATGAAFTSKYKREVLKEADCDHVTLAFFGDGTC 809
            QGGSMHMFSKEHNVLGGFAFIGEGIPVATGAAFTSKYKREVLKE DCD VTLAFFGDGTC
Sbjct: 177  QGGSMHMFSKEHNVLGGFAFIGEGIPVATGAAFTSKYKREVLKE-DCDEVTLAFFGDGTC 235

Query: 808  NNGQFFECLNMAQLWKLPIVFVVENNLWAIGMSHLRATSDPEIYKKGPAFGMPGVHVDGM 629
            NNGQFFECLNMA LWKLPIVFVVENNLWAIGMSHLRATSDPEI+KKGPAFGMPG HVDGM
Sbjct: 236  NNGQFFECLNMASLWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGFHVDGM 295

Query: 628  DVLKVREVAKEAIGRARRGEGPSLIECETYRFRGHSLADPDELRDAGEKNHYNTRCPIAA 449
            DVLKVREVAKEAI RARRGEGP+L+ECETYRFRGHSLADPDELRD  EK HY  R P+ A
Sbjct: 296  DVLKVREVAKEAIQRARRGEGPTLVECETYRFRGHSLADPDELRDPAEKAHYAARDPLTA 355

Query: 448  LKKYIFENNLATEADLKTIDKKIDELIEEAVEFAEASPLPPRSQLLENVFADPKGFGIGP 269
            LKKYIF+N LA+EA+LK I+KKIDE++EE+VEFA+ASP PPRSQLLENVFADPKGFGIGP
Sbjct: 356  LKKYIFDNKLASEAELKAIEKKIDEVVEESVEFADASPPPPRSQLLENVFADPKGFGIGP 415

Query: 268  DGKYRCEDPKFTEGTAQV 215
            DG YRCEDPKFTEGTA V
Sbjct: 416  DGSYRCEDPKFTEGTAHV 433


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