BLASTX nr result
ID: Coptis25_contig00001340
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00001340
(1762 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001190724.1| F-box/LRR-repeat protein [Arabidopsis thalia... 157 1e-35
ref|NP_567422.1| F-box/LRR-repeat protein [Arabidopsis thaliana]... 157 1e-35
ref|NP_567421.1| F-box/LRR-repeat protein [Arabidopsis thaliana]... 154 9e-35
emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera] 150 1e-33
ref|NP_176127.1| F-box protein [Arabidopsis thaliana] gi|3740953... 149 2e-33
>ref|NP_001190724.1| F-box/LRR-repeat protein [Arabidopsis thaliana]
gi|332657973|gb|AEE83373.1| F-box/LRR-repeat protein
[Arabidopsis thaliana]
Length = 443
Score = 157 bits (396), Expect = 1e-35
Identities = 113/316 (35%), Positives = 164/316 (51%), Gaps = 21/316 (6%)
Frame = -1
Query: 1222 NGGEDVDRISCLPDNILHHILSFLPTKYAVGSSVLSTKWKYLWTSVPKLELSDSLLYSTK 1043
+G DV IS LPD+I HILSFLPTK A +SVLS KW+YL+ VP L+L DS+ + +
Sbjct: 4 SGSRDV--ISSLPDDISSHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDDSVYLNPE 61
Query: 1042 IKSGDPMVKASFMNFVDRVLLLHEASSIHKFSLECAEAYDVTRFNAWISAVLKRNVQELI 863
+ + SFM+FVDRVL L S +HKFSL+ + D R WI+ VL+R V +L
Sbjct: 62 ---NETEISTSFMDFVDRVLALQGNSPLHKFSLKIGDGIDPVRIIPWINNVLERGVSDLD 118
Query: 862 LSVCMD-PFVFPLCRFNCQSLTTLKIDVGSACFWTPTSMCFPKLKVLNLKDVIF-CGDLS 689
L + ++ F+ P + C++L LK+ G + PKLK L ++ F +
Sbjct: 119 LHLNLESEFLLPSQVYLCKTLVWLKLRFGLYPTIDVEDVHLPKLKTLYIEATHFEEHGVG 178
Query: 688 IQQAFFSFPVLEEFHAYSIEWEKFNTVNISAPTLKKLIL-----DVFDDSYTVEDCEINI 524
+ + P+LE+ I W ++ ++S PTLK+L D F S ++
Sbjct: 179 LTKLLSGCPMLEDLVLDDISWFIWDFASVSVPTLKRLRFSWQERDEFPKSVLLD------ 232
Query: 523 YTENLIYFELASQLAYWYNLHNLSSLVEARIGCKFGH----NYHR----------ISKFF 386
T NL+Y + +A Y NL SLVEA I + NYH+ + F
Sbjct: 233 -TPNLVYLKFTDTVAGKYPKVNLDSLVEAHIDLRLLKPLLINYHQGYGENDMVGNATDFI 291
Query: 385 GKICNVKVLHLSIHTI 338
+ICNVK L+LS +T+
Sbjct: 292 MRICNVKTLYLSANTL 307
>ref|NP_567422.1| F-box/LRR-repeat protein [Arabidopsis thaliana]
gi|75245750|sp|Q8L7H1.1|FBL75_ARATH RecName:
Full=F-box/LRR-repeat protein At4g14103
gi|22136642|gb|AAM91640.1| unknown protein [Arabidopsis
thaliana] gi|332657972|gb|AEE83372.1| F-box/LRR-repeat
protein [Arabidopsis thaliana]
Length = 381
Score = 157 bits (396), Expect = 1e-35
Identities = 113/316 (35%), Positives = 164/316 (51%), Gaps = 21/316 (6%)
Frame = -1
Query: 1222 NGGEDVDRISCLPDNILHHILSFLPTKYAVGSSVLSTKWKYLWTSVPKLELSDSLLYSTK 1043
+G DV IS LPD+I HILSFLPTK A +SVLS KW+YL+ VP L+L DS+ + +
Sbjct: 4 SGSRDV--ISSLPDDISSHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDDSVYLNPE 61
Query: 1042 IKSGDPMVKASFMNFVDRVLLLHEASSIHKFSLECAEAYDVTRFNAWISAVLKRNVQELI 863
+ + SFM+FVDRVL L S +HKFSL+ + D R WI+ VL+R V +L
Sbjct: 62 ---NETEISTSFMDFVDRVLALQGNSPLHKFSLKIGDGIDPVRIIPWINNVLERGVSDLD 118
Query: 862 LSVCMD-PFVFPLCRFNCQSLTTLKIDVGSACFWTPTSMCFPKLKVLNLKDVIF-CGDLS 689
L + ++ F+ P + C++L LK+ G + PKLK L ++ F +
Sbjct: 119 LHLNLESEFLLPSQVYLCKTLVWLKLRFGLYPTIDVEDVHLPKLKTLYIEATHFEEHGVG 178
Query: 688 IQQAFFSFPVLEEFHAYSIEWEKFNTVNISAPTLKKLIL-----DVFDDSYTVEDCEINI 524
+ + P+LE+ I W ++ ++S PTLK+L D F S ++
Sbjct: 179 LTKLLSGCPMLEDLVLDDISWFIWDFASVSVPTLKRLRFSWQERDEFPKSVLLD------ 232
Query: 523 YTENLIYFELASQLAYWYNLHNLSSLVEARIGCKFGH----NYHR----------ISKFF 386
T NL+Y + +A Y NL SLVEA I + NYH+ + F
Sbjct: 233 -TPNLVYLKFTDTVAGKYPKVNLDSLVEAHIDLRLLKPLLINYHQGYGENDMVGNATDFI 291
Query: 385 GKICNVKVLHLSIHTI 338
+ICNVK L+LS +T+
Sbjct: 292 MRICNVKTLYLSANTL 307
>ref|NP_567421.1| F-box/LRR-repeat protein [Arabidopsis thaliana]
gi|75249810|sp|Q94B46.1|FBL74_ARATH RecName:
Full=F-box/LRR-repeat protein At4g14096
gi|14596145|gb|AAK68800.1| Unknown protein [Arabidopsis
thaliana] gi|22136112|gb|AAM91134.1| unknown protein
[Arabidopsis thaliana] gi|332657971|gb|AEE83371.1|
F-box/LRR-repeat protein [Arabidopsis thaliana]
Length = 468
Score = 154 bits (388), Expect = 9e-35
Identities = 111/305 (36%), Positives = 161/305 (52%), Gaps = 16/305 (5%)
Frame = -1
Query: 1204 DRISCLPDNILHHILSFLPTKYAVGSSVLSTKWKYLWTSVPKLELSDSLLYSTKIKSGDP 1025
D IS LP+ I HILSFLPTK A +SVLS KW+YL+ VP L+L +S+ + + +
Sbjct: 8 DIISSLPEAISCHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDESVYLNPE---NET 64
Query: 1024 MVKASFMNFVDRVLLLHEASSIHKFSLECAEAYDVTRFNAWISAVLKRNVQELILSVCMD 845
V +SFM+FVDRVL L S +HKFSL+ + + R WI+ VL+R V +L L V M+
Sbjct: 65 EVSSSFMDFVDRVLALQGNSPLHKFSLKIGDGVEPDRIIPWINNVLERGVSDLDLHVYME 124
Query: 844 -PFVFPLCRFNCQSLTTLKIDVGSACFWTPTSMCFPKLKVLNLKDVIF-CGDLSIQQAFF 671
FVFP F ++L LK+ + + + PKLK L + F + + +
Sbjct: 125 TEFVFPSEMFLSKTLVRLKLMLYPLLEF--EDVYLPKLKTLYIDSCYFEKYGIGLTKLLS 182
Query: 670 SFPVLEEFHAYSIEWEKFNTVNISAPTLKKL-----ILDVFDDSYTVEDCEINIYTENLI 506
P+LE+ I W ++ ++S PTLK+L + D F S ++I T NL+
Sbjct: 183 GCPILEDLVLDDIPWCTWDFASVSVPTLKRLTFSTQVRDEFPKS-------VSIDTPNLV 235
Query: 505 YFELASQLAYWYNLHNLSSLVEARIGCKF--GHNYH-------RISKFFGKICNVKVLHL 353
Y + +A Y N SLVEA I + GH + + F +ICNVK L+L
Sbjct: 236 YLKFTDTVAGKYPKVNFDSLVEAHIDLRLLQGHQGYGENDMVGNATDFIMRICNVKTLYL 295
Query: 352 SIHTI 338
S +T+
Sbjct: 296 SSNTL 300
>emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera]
Length = 607
Score = 150 bits (378), Expect = 1e-33
Identities = 116/315 (36%), Positives = 164/315 (52%), Gaps = 22/315 (6%)
Frame = -1
Query: 1228 GQNGGEDVDRISCLPDNILHHILSFLPTKYAVGSSVLSTKWKYLWTSVPKLELSDSLLY- 1052
G E D IS LPD +L HILSFLPTK+AVG+S+LS +W+YLW SVP L+ D L
Sbjct: 2 GSEYEESRDIISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLN 61
Query: 1051 -STKIKSGDPMVKASFMNFVDRVLLLHEASSIHKFSLECAEAYDVTRFNAWISAVLKRNV 875
ST ++ + ++ F NFVD VL E S I KF L + ++ +WI L+R V
Sbjct: 62 PSTLVELEERII--MFQNFVDGVLRHSEVSCIKKFRLGYRD-NNLDSVYSWICIALERRV 118
Query: 874 QELILSVCMDPFV-FPLCRFNCQSLTTLKIDVGSACFWTPTSMCFPKLKVLNLKDVIFCG 698
QEL L + +D V P F C++L +K+ + PT++ P LK L+LK V +
Sbjct: 119 QELDLHLLIDWRVELPPMFFICKTLVVVKLSC-ALFLDIPTTVWLPSLKALHLKSVEYSD 177
Query: 697 DLSIQQAFFSFPVLEEFHAYSIEWEKFNTVNISAPTLKKLILDVFDDSYT------VEDC 536
D SIQ+ PVLEE E + VN+S P+LK L + F D + +D
Sbjct: 178 DDSIQKLLSGCPVLEELVIEREERDNQWVVNVSNPSLKILRIFFFTDGFAHPYEQEDQDY 237
Query: 535 EINIYTENLIYFELASQLAYWYNLHNLSSLVEARIGCK------------FGHNYH-RIS 395
++ + NL Y + L+ Y + +L SLV+A I + G +YH I
Sbjct: 238 KVVVDAPNLEYLSITDYLSKDYFVKDLPSLVKAFIDVEQDSEEFEESPHNGGISYHGPIY 297
Query: 394 KFFGKICNVKVLHLS 350
+ G+I NVK L L+
Sbjct: 298 ELLGRISNVKCLSLT 312
>ref|NP_176127.1| F-box protein [Arabidopsis thaliana]
gi|374095392|sp|Q9LQC1.2|FB65_ARATH RecName:
Full=Putative F-box protein At1g58310
gi|332195413|gb|AEE33534.1| F-box protein [Arabidopsis
thaliana]
Length = 505
Score = 149 bits (377), Expect = 2e-33
Identities = 107/329 (32%), Positives = 159/329 (48%), Gaps = 36/329 (10%)
Frame = -1
Query: 1216 GEDVDRISCLPDNILHHILSFLPTKYAVGSSVLSTKWKYLWTSVPKLELSDSLL------ 1055
G D IS LPD++L HILSFL TK A +SVL+ KW+YL+ SVP L+ DS+
Sbjct: 4 GRSRDIISGLPDSLLCHILSFLNTKEAASTSVLAKKWRYLFASVPNLDFDDSVHLRLGKR 63
Query: 1054 --------YSTKIKSGDPMVKASFMNFVDRVLLLHEASSIHKFSLECAEAYDVTRFNAWI 899
Y I + SFM+FVD+VL L + S +HKFSL+ + D+ R WI
Sbjct: 64 NPAVSGEDYLKMINERSDQLSTSFMDFVDQVLRLQDNSPLHKFSLKIRDCVDIVRIICWI 123
Query: 898 SAVLKRNVQELILSVCMD-PFVFPLCRFNCQSLTTLKIDVGSACFWTPTSMCFPKLKVLN 722
VL+R V +L L + + P F ++L LK+ V F + PKLK L+
Sbjct: 124 LKVLERGVSDLELDMHLKWKSSLPSKIFLSETLVRLKLSVERGPFIDVEDVHLPKLKTLH 183
Query: 721 LKDVIF-CGDLSIQQAFFSFPVLEEFHAYSIEWEKFNTVNISAPTLKKLIL--DVFDDSY 551
+ V F + + + +LEE + I W ++ V++S TLK+L +V D
Sbjct: 184 IVSVKFEKHGIGLNKLLSGCHILEELNLEYISWCLWDFVSVSLTTLKRLTFCGEVMQDEN 243
Query: 550 TVEDCEINIYTENLIYFELASQLAYWYNLHNLSSLVEARIGCKFGHNYHRISKFFGK--- 380
+ ++ T NL+Y +A Y+ N SLVEA I + + ++F
Sbjct: 244 PI---SVSFNTPNLVYLMFTDAIADEYSTVNFDSLVEAHINLQMSEDQVEQTRFSDSEGN 300
Query: 379 ---------------ICNVKVLHLSIHTI 338
ICNVK+L+LS++T+
Sbjct: 301 MEGCMVANATELIMGICNVKILYLSVYTL 329