BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00001329
         (349 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004146426.1| PREDICTED: RNA-dependent RNA polymerase 1-li...    95   5e-18
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...    85   7e-15
gb|ABL68088.1| putative RNA-directed RNA polymerase 1 [Nicotiana...    85   7e-15
ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...    84   9e-15
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]        84   1e-14

>ref|XP_004146426.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
           gi|449491619|ref|XP_004158954.1| PREDICTED:
           RNA-dependent RNA polymerase 1-like [Cucumis sativus]
           gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
           1a [Cucumis sativus]
          Length = 1130

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 47/77 (61%), Positives = 59/77 (76%), Gaps = 6/77 (7%)
 Frame = -2

Query: 213 VPVTPSKVYFCQFCEPDVNLSNRVIRHFHEYIDNFIHVSFYDEDWEKMRSTDLSPRATSK 34
           V +TP KV+FC    P+VN+SNRV+RHF +YIDNF+ VSF DE+W+KMRSTDL PR +SK
Sbjct: 369 VQITPCKVFFCG---PEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLPRMSSK 425

Query: 33  NED------RRILSTLR 1
           +ED      RRILS L+
Sbjct: 426 SEDGKTDIYRRILSVLK 442


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
           gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
           [Nicotiana glutinosa]
          Length = 1117

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 46/76 (60%), Positives = 56/76 (73%), Gaps = 5/76 (6%)
 Frame = -2

Query: 213 VPVTPSKVYFCQFCEPDVNLSNRVIRHFHEYIDNFIHVSFYDEDWEKMRSTDLSPRATSK 34
           V VTP KVYFC    P+VN+SNRV+R++ E IDNF+ VSF DE+WEK+ STDL PRA++ 
Sbjct: 361 VLVTPCKVYFCG---PEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHSTDLLPRASTG 417

Query: 33  NEDR-----RILSTLR 1
           N  R     RILSTLR
Sbjct: 418 NGVRTDIYLRILSTLR 433


>gb|ABL68088.1| putative RNA-directed RNA polymerase 1 [Nicotiana attenuata]
          Length = 1044

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 46/76 (60%), Positives = 56/76 (73%), Gaps = 5/76 (6%)
 Frame = -2

Query: 213 VPVTPSKVYFCQFCEPDVNLSNRVIRHFHEYIDNFIHVSFYDEDWEKMRSTDLSPRATSK 34
           V VTP KVYFC    P+VN+SNRV+R++ E IDNF+ VSF DE+WEK+ STDL PRA++ 
Sbjct: 359 VLVTPCKVYFCG---PEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHSTDLLPRASTG 415

Query: 33  NEDR-----RILSTLR 1
           N  R     RILSTLR
Sbjct: 416 NGIRTDIYLRILSTLR 431


>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
           gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
           [Populus trichocarpa]
          Length = 1133

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 44/79 (55%), Positives = 58/79 (73%), Gaps = 6/79 (7%)
 Frame = -2

Query: 219 YEVPVTPSKVYFCQFCEPDVNLSNRVIRHFHEYIDNFIHVSFYDEDWEKMRSTDLSPRAT 40
           Y+V +TP KV+FC    P+VN+SNRV+R + E IDNF+ VSF DE+ EK+ STD+SPR +
Sbjct: 368 YKVQITPCKVFFCG---PEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDVSPRTS 424

Query: 39  SKNEDR------RILSTLR 1
           S+NE R      RILSTL+
Sbjct: 425 SRNELRRTAIYNRILSTLQ 443


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 45/76 (59%), Positives = 56/76 (73%), Gaps = 5/76 (6%)
 Frame = -2

Query: 213 VPVTPSKVYFCQFCEPDVNLSNRVIRHFHEYIDNFIHVSFYDEDWEKMRSTDLSPRATSK 34
           V VTP KVYFC    P+VN+SNRV+R++ E I+NF+ VSF DE+WEK+ STDL PRA++ 
Sbjct: 360 VVVTPCKVYFCG---PEVNVSNRVLRNYSEDINNFLRVSFVDEEWEKIHSTDLLPRASTG 416

Query: 33  NEDR-----RILSTLR 1
           N  R     RILSTLR
Sbjct: 417 NGTRTDIYERILSTLR 432