BLASTX nr result
ID: Coptis25_contig00001266
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00001266
(2531 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002272755.1| PREDICTED: pentatricopeptide repeat-containi... 634 e-179
ref|XP_004146221.1| PREDICTED: pentatricopeptide repeat-containi... 590 e-166
ref|XP_003523367.1| PREDICTED: pentatricopeptide repeat-containi... 588 e-165
gb|ADN33740.1| pentatricopeptide repeat-containing protein [Cucu... 583 e-164
ref|XP_003526715.1| PREDICTED: pentatricopeptide repeat-containi... 582 e-163
>ref|XP_002272755.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like
[Vitis vinifera]
Length = 672
Score = 634 bits (1635), Expect = e-179
Identities = 346/641 (53%), Positives = 436/641 (68%), Gaps = 8/641 (1%)
Frame = -2
Query: 2344 SIRCLSYATPEEXXXXXXXXXRTLRIEPPLNSIRPQRRXXXXXXXXXXXXXXXXXXPEHV 2165
S+R LS+ TPEE R LRIEPPL+S+R Q+ E V
Sbjct: 30 SLRHLSFVTPEEAAAERRRRKRRLRIEPPLSSLRHQQAQPRQNPNPNHNPNAPKLP-EPV 88
Query: 2164 SALKGKRLDLHNKILTLIRENDLDEAALYTRHSIYSNCKPTIFTCNAVMAALLRQSRYSD 1985
SAL G RL+LHN+IL LIR NDLDEAAL TRHSIYSNC+PTIFT N+V+AALLRQSRYSD
Sbjct: 89 SALSGNRLNLHNRILGLIRVNDLDEAALLTRHSIYSNCRPTIFTVNSVLAALLRQSRYSD 148
Query: 1984 MLSLHRFVTQAGVAANVVTHNLLINAYCDCRKTDTALEHYKQLINNAPFDPSPTTYRILV 1805
+LSLHRF+TQAGVAANVVTHNLLINAY DCRKTDTALEHYKQLIN+APF+PSPTTYRIL+
Sbjct: 149 LLSLHRFITQAGVAANVVTHNLLINAYLDCRKTDTALEHYKQLINDAPFNPSPTTYRILI 208
Query: 1804 KGLVDNLKVDRAVELKDEMLEKGLVADPVVYNYLILGLVKNEDGDRXXXXXXXXXXXLDF 1625
KG+VDN KV+RA+ELK+EML KG ADPVVY+YL+LG V+N + D L
Sbjct: 209 KGIVDNGKVERALELKEEMLGKGFAADPVVYSYLMLGHVRNLNADGVFELYEELKEKLGD 268
Query: 1624 VNDGIVYGNLMKAYFLKGLDKEAMEIYADLSGEGSSIKMNALAYNSVLQALIKNGKSDEA 1445
V+DG+V G+LMK YFL+G++KEAM+ YA+ GEGS I+M+A+A+NSVL AL KNGK DEA
Sbjct: 269 VDDGVVVGSLMKGYFLRGMEKEAMQCYAEAVGEGSKIRMSAVAFNSVLDALSKNGKFDEA 328
Query: 1444 LQLFERMKEEHSPPRKLTVNLGSYNVMVDWFCEQGKFDDAIEVFRKMGEKRSSPDTLSFN 1265
+ LFERM E++PPR+L++NLGS+NVMVD FC G+F DAIEVFRKMGEKR S DTLS+N
Sbjct: 329 MLLFERMMAEYNPPRRLSMNLGSFNVMVDGFCTAGRFKDAIEVFRKMGEKRCSADTLSYN 388
Query: 1264 NLIQQLCANDLMPKAEELYREMGEIPGANPDEYTYVLLIDSCFEQSRADDAAEYFGKMVE 1085
NLI+QLC N ++ +AEELY EM G NPDE+TYVLL+D+CF+++R DD A YF KMVE
Sbjct: 389 NLIEQLCNNGMLAEAEELYGEMAN-KGVNPDEFTYVLLMDTCFKENRTDDGAGYFRKMVE 447
Query: 1084 SGLKPNLATYNKVVDGLIKAGKIDEANGFFSQMIVKLRLDAANFEVMLRALCEAAKLDEV 905
+GL+PNLA Y+K+VDGL+K GKIDEA F+ M+ KL++D A+++ +++AL E K D+V
Sbjct: 448 TGLRPNLAVYSKLVDGLVKVGKIDEAKSFYDLMVKKLKMDEASYKFLMKALFEVGKHDDV 507
Query: 904 LKLVSEMLKDEKVGLNSEMDEFVRDALRKEGREGDLVXXXXXXXXXXXXXXXXXXXXXXX 725
LK++ +ML D+ +++ EFV++ LRKEGRE D+V
Sbjct: 508 LKMIGDMLDDDASEFTTDLQEFVKEELRKEGREEDVV----------------------K 545
Query: 724 XXXXXXXXXXXXXXXXAGGTYSLFGDTKPSNGNVSPLSLFGDTKTSNS-DV---PSAETF 557
A T + K + ++ P LFG T N DV + E
Sbjct: 546 LMEDKEREKAEAQAKEAAATEAAKASAKAAVSSLLPSKLFGSKDTENEPDVVIGNTVEAI 605
Query: 556 SMNGEAPSGNQEGSGGAPA----VEATPALGVVEETIDASD 446
S+N E QE G +PA EAT A + + + D
Sbjct: 606 SVNEEVEDVEQESIGDSPAESGSEEATKAHNSADLDVKSDD 646
>ref|XP_004146221.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like
[Cucumis sativus] gi|449511036|ref|XP_004163845.1|
PREDICTED: pentatricopeptide repeat-containing protein
At3g49240-like [Cucumis sativus]
Length = 624
Score = 590 bits (1522), Expect = e-166
Identities = 296/517 (57%), Positives = 384/517 (74%), Gaps = 1/517 (0%)
Frame = -2
Query: 2344 SIRCLSYATPEEXXXXXXXXXRTLRIEPPLNSIRPQRRXXXXXXXXXXXXXXXXXXPEHV 2165
++R LS+A+ EE R LRIEPPL+S R PEH+
Sbjct: 34 TLRFLSFASAEEADAERRRRKRRLRIEPPLSSSSAARPLTQPPRSQTPQNPNAPKIPEHI 93
Query: 2164 SALKGKRLDLHNKILTLIRENDLDEAALYTRHSIYSNCKPTIFTCNAVMAALLRQSRYSD 1985
SAL G RL+LHN+ILTLIRENDL+EAAL+TRHSIYSNC+PTIFT NAV+ A LRQS+Y+D
Sbjct: 94 SALSGNRLNLHNRILTLIRENDLEEAALFTRHSIYSNCRPTIFTVNAVLNAQLRQSKYAD 153
Query: 1984 MLSLHRFVTQAGVAANVVTHNLLINAYCDCRKTDTALEHYKQLINNAPFDPSPTTYRILV 1805
+LSLHRF+TQAGV N++THNL+ Y DCRK DTA+EHYKQLIN+APF+PSPTTYRIL+
Sbjct: 154 LLSLHRFITQAGVVPNIITHNLIFQTYLDCRKPDTAMEHYKQLINDAPFNPSPTTYRILI 213
Query: 1804 KGLVDNLKVDRAVELKDEMLEKGLVADPVVYNYLILGLVKNEDGDRXXXXXXXXXXXLD- 1628
KGLVDN K++RA+ELKDEM+EKG DP++Y+YL+ G V++ D D L
Sbjct: 214 KGLVDNNKLERAMELKDEMIEKGFAPDPLIYHYLMGGCVRSLDPDGVFKLFEELKEKLGA 273
Query: 1627 FVNDGIVYGNLMKAYFLKGLDKEAMEIYADLSGEGSSIKMNALAYNSVLQALIKNGKSDE 1448
V DG+VYGNLMK YF+K +++EAM+ Y + G+ S +KM+A+AYNSVL AL +NGK E
Sbjct: 274 TVEDGVVYGNLMKGYFMKEMEEEAMKCYEETVGDNSVVKMSAIAYNSVLDALCRNGKFGE 333
Query: 1447 ALQLFERMKEEHSPPRKLTVNLGSYNVMVDWFCEQGKFDDAIEVFRKMGEKRSSPDTLSF 1268
AL LF+RM +EH PPR L VNLGS+NVMVD +C +G+F +AIEVF KMG+ R PDTLSF
Sbjct: 334 ALTLFDRMTKEHRPPRHLAVNLGSFNVMVDGYCIEGRFKEAIEVFEKMGDYRCCPDTLSF 393
Query: 1267 NNLIQQLCANDLMPKAEELYREMGEIPGANPDEYTYVLLIDSCFEQSRADDAAEYFGKMV 1088
NNLI+QLC N ++ +AE LY M + G NPDE+TY LL+DSCF+++RADDAA YF KMV
Sbjct: 394 NNLIEQLCNNGMLAEAEMLYGTMDD-KGVNPDEFTYGLLMDSCFKKNRADDAAAYFRKMV 452
Query: 1087 ESGLKPNLATYNKVVDGLIKAGKIDEANGFFSQMIVKLRLDAANFEVMLRALCEAAKLDE 908
+SGL+PN+A YN +VD L+K GKID+A FF M+ KL++DA++++ +++AL E+ K+DE
Sbjct: 453 DSGLRPNIAVYNILVDELVKLGKIDDAKSFFDLMVKKLKMDASSYQFIMKALSESGKMDE 512
Query: 907 VLKLVSEMLKDEKVGLNSEMDEFVRDALRKEGREGDL 797
+L +V +L D+ + + E+ EFVR LRKE RE DL
Sbjct: 513 ILNVVDTLLDDDGIEFSEELQEFVRGELRKENREEDL 549
>ref|XP_003523367.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like
[Glycine max]
Length = 631
Score = 588 bits (1515), Expect = e-165
Identities = 295/517 (57%), Positives = 383/517 (74%), Gaps = 1/517 (0%)
Frame = -2
Query: 2344 SIRCLSYATPEEXXXXXXXXXRTLRIEPPLNSIRPQRRXXXXXXXXXXXXXXXXXXPEHV 2165
SIR LS+++PEE R LR+EPPL+++ + PEHV
Sbjct: 27 SIRLLSFSSPEEAAAERRRRKRQLRMEPPLSALNRTQTAPKPLQSPYYLNPNNPKLPEHV 86
Query: 2164 SALKGKRLDLHNKILTLIRENDLDEAALYTRHSIYSNCKPTIFTCNAVMAALLRQSRYSD 1985
SAL G RL+LHN+ILTLIRENDLDEAALYTRHSIYSNC+PTIFT NAV+AALLRQSRYSD
Sbjct: 87 SALTGNRLNLHNRILTLIRENDLDEAALYTRHSIYSNCRPTIFTINAVLAALLRQSRYSD 146
Query: 1984 MLSLHRFVTQAGVAANVVTHNLLINAYCDCRKTDTALEHYKQLINNAPFDPSPTTYRILV 1805
+LSLHRF+TQAGV N++THNL+ Y DCRK DTALEHYKQ +N+AP +PSPTTYR+L+
Sbjct: 147 LLSLHRFITQAGVVPNIITHNLVFQTYLDCRKPDTALEHYKQFLNDAPMNPSPTTYRVLI 206
Query: 1804 KGLVDNLKVDRAVELKDEMLEKGLVADPVVYNYLILGLVKNEDGDR-XXXXXXXXXXXLD 1628
KGL+DN K++RA+++K EM KG DP+VY+YL+LG + DGD
Sbjct: 207 KGLIDNSKLERAMDIKTEMDSKGFAPDPLVYHYLMLGHARVSDGDAILRLYEELRERLGG 266
Query: 1627 FVNDGIVYGNLMKAYFLKGLDKEAMEIYADLSGEGSSIKMNALAYNSVLQALIKNGKSDE 1448
V DGIV+G LMK YF+KG++KEAME Y + G+ KM+A+ YNSVL AL KNG+ DE
Sbjct: 267 VVQDGIVFGCLMKGYFVKGMEKEAMECYEEALGKK---KMSAVGYNSVLDALSKNGRFDE 323
Query: 1447 ALQLFERMKEEHSPPRKLTVNLGSYNVMVDWFCEQGKFDDAIEVFRKMGEKRSSPDTLSF 1268
AL+LF+RM +EH P ++L+VNLGS+NV+VD +C++G+F++A+EVFRKMGE R SPDTLSF
Sbjct: 324 ALRLFDRMMKEHEPLKRLSVNLGSFNVIVDGYCDEGRFEEAMEVFRKMGEYRCSPDTLSF 383
Query: 1267 NNLIQQLCANDLMPKAEELYREMGEIPGANPDEYTYVLLIDSCFEQSRADDAAEYFGKMV 1088
NNLI +LC N + +AEE+Y EM E G +PDE+TY LL+D+CF ++RADDAA YF KMV
Sbjct: 384 NNLIDRLCDNGRIVEAEEVYGEM-EGKGVSPDEFTYGLLMDACFRENRADDAAAYFRKMV 442
Query: 1087 ESGLKPNLATYNKVVDGLIKAGKIDEANGFFSQMIVKLRLDAANFEVMLRALCEAAKLDE 908
+SGL+PNLA YN++V GL+K GKIDEA GFF M+ KL++D +++ +++ L + +LDE
Sbjct: 443 DSGLRPNLAVYNRLVGGLVKVGKIDEAKGFFELMVKKLKMDVTSYQFIMKVLSDEGRLDE 502
Query: 907 VLKLVSEMLKDEKVGLNSEMDEFVRDALRKEGREGDL 797
+LK+V +L D V + E EFV+ LRKEGRE +L
Sbjct: 503 MLKIVDTLLDDNGVDFDEEFQEFVKGELRKEGREEEL 539
>gb|ADN33740.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
melo]
Length = 624
Score = 583 bits (1504), Expect = e-164
Identities = 292/517 (56%), Positives = 379/517 (73%), Gaps = 1/517 (0%)
Frame = -2
Query: 2344 SIRCLSYATPEEXXXXXXXXXRTLRIEPPLNSIRPQRRXXXXXXXXXXXXXXXXXXPEHV 2165
+ R LS+A+ EE R LRIEPPL+S R PEH+
Sbjct: 34 TFRFLSFASAEEADAERRRRKRRLRIEPPLSSSSAARPQSQPSRSQTPQNPNTPKVPEHI 93
Query: 2164 SALKGKRLDLHNKILTLIRENDLDEAALYTRHSIYSNCKPTIFTCNAVMAALLRQSRYSD 1985
SAL G RL+LHN+ILTLIRENDL+EAAL+TRHSIYSNC+PTIFT NAV+ A LRQS+Y+D
Sbjct: 94 SALSGNRLNLHNRILTLIRENDLEEAALFTRHSIYSNCRPTIFTVNAVLNAQLRQSKYAD 153
Query: 1984 MLSLHRFVTQAGVAANVVTHNLLINAYCDCRKTDTALEHYKQLINNAPFDPSPTTYRILV 1805
+LSLHRF+TQAGV N++THNL+ Y DCRK DTA+EHYKQLIN+APF+PSPTTYRIL+
Sbjct: 154 LLSLHRFITQAGVVPNIITHNLIFQTYLDCRKPDTAMEHYKQLINDAPFNPSPTTYRILI 213
Query: 1804 KGLVDNLKVDRAVELKDEMLEKGLVADPVVYNYLILGLVKNEDGDR-XXXXXXXXXXXLD 1628
KGLVDN K++RA+ELK+EM+ KG DP++Y+YL+ G V++ D D
Sbjct: 214 KGLVDNKKLERAMELKEEMIVKGFAPDPLIYHYLMAGCVRSSDPDGVFKLFEELKEKLGG 273
Query: 1627 FVNDGIVYGNLMKAYFLKGLDKEAMEIYADLSGEGSSIKMNALAYNSVLQALIKNGKSDE 1448
V DG+VYGNLMK YF+K +++EAM+ Y + G+ +KM+A+AYNSVL AL K+GK E
Sbjct: 274 TVEDGVVYGNLMKGYFMKEMEEEAMKCYEETVGDNPVVKMSAIAYNSVLDALCKHGKFSE 333
Query: 1447 ALQLFERMKEEHSPPRKLTVNLGSYNVMVDWFCEQGKFDDAIEVFRKMGEKRSSPDTLSF 1268
AL LF+RM +EH PPR L VNLG++NVMVD +C +G+F +AI VF +MG+ R SPDTLSF
Sbjct: 334 ALTLFDRMTKEHRPPRHLAVNLGTFNVMVDGYCIKGRFKEAIGVFEEMGDYRCSPDTLSF 393
Query: 1267 NNLIQQLCANDLMPKAEELYREMGEIPGANPDEYTYVLLIDSCFEQSRADDAAEYFGKMV 1088
NNLI+QLC N ++ +AE LY MGE G NPDE+TY LL+ SCF+++RADDAA YF KMV
Sbjct: 394 NNLIEQLCNNGMLAEAEMLYGTMGE-KGVNPDEFTYGLLMHSCFQKNRADDAAAYFRKMV 452
Query: 1087 ESGLKPNLATYNKVVDGLIKAGKIDEANGFFSQMIVKLRLDAANFEVMLRALCEAAKLDE 908
+SGL+PN+A YN +V L+K GK+DEA FF M+ KL++DA+N++ +++AL E+ K+DE
Sbjct: 453 DSGLRPNIAVYNILVGELVKLGKVDEAKSFFDLMVKKLKMDASNYQFIMKALSESGKMDE 512
Query: 907 VLKLVSEMLKDEKVGLNSEMDEFVRDALRKEGREGDL 797
VL +V +L D+ + + E+ EFVR LRKE RE DL
Sbjct: 513 VLNVVDTLLDDDGIEFSEELQEFVRGELRKEDREEDL 549
>ref|XP_003526715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like
[Glycine max]
Length = 632
Score = 582 bits (1501), Expect = e-163
Identities = 292/518 (56%), Positives = 386/518 (74%), Gaps = 2/518 (0%)
Frame = -2
Query: 2344 SIRCLSYATPEEXXXXXXXXXRTLRIEPPLNSIRPQRRXXXXXXXXXXXXXXXXXXPEHV 2165
S+R +S+++PEE R LR+EPPL+++ + PEHV
Sbjct: 27 SLRLISFSSPEEAAAERRRRKRQLRMEPPLSALNRTQTAPKPQSSPYYLNPNNPKLPEHV 86
Query: 2164 SALKGKRLDLHNKILTLIRENDLDEAALYTRHSIYSNCKPTIFTCNAVMAALLRQSRYSD 1985
S+L G RL+LHN+ILTLIRENDLDEAALYTRHSIYSNC+PTIFT NAV+AALLRQSRYSD
Sbjct: 87 SSLTGNRLNLHNRILTLIRENDLDEAALYTRHSIYSNCRPTIFTINAVLAALLRQSRYSD 146
Query: 1984 MLSLHRFVTQAGVAANVVTHNLLINAYCDCRKTDTALEHYKQLINNAPFDPSPTTYRILV 1805
LSLHRF+TQAGV N++THNL+ Y DCRK DTALEHYKQ +N+AP +PSPTTYR+L+
Sbjct: 147 FLSLHRFITQAGVVPNIITHNLVFQTYLDCRKPDTALEHYKQFLNDAPMNPSPTTYRVLI 206
Query: 1804 KGLVDNLKVDRAVELKDEMLEKGLVADPVVYNYLILGLVKNEDGDR-XXXXXXXXXXXLD 1628
KGL+DN K++RA+E+K EM +G DP+VY+YL+LG + DGD
Sbjct: 207 KGLIDNNKLERALEIKTEMDSRGFSPDPLVYHYLMLGHTRVSDGDGVLRLYEELRERLGG 266
Query: 1627 FVNDGIVYGNLMKAYFLKGLDKEAMEIYADLSGEGSSIKMNALAYNSVLQALIKNGKSDE 1448
V DG+V+G LMK YFLKG++KEAME Y ++ G+ KM+A+ YNSVL AL KNG+ DE
Sbjct: 267 VVEDGVVFGCLMKGYFLKGMEKEAMECYEEVLGKK---KMSAVGYNSVLDALSKNGRLDE 323
Query: 1447 ALQLFERMKEEHSPPRKLTVNLGSYNVMVDWFCEQGKFDDAIEVFRKMGEKRS-SPDTLS 1271
AL+LF+RM +E+ PP++L+VNLGS+NV+VD +C +G+F++A+EVFRK+GE R SPDTLS
Sbjct: 324 ALRLFDRMMKEYEPPKRLSVNLGSFNVIVDGYCGEGRFEEAMEVFRKIGEYRGCSPDTLS 383
Query: 1270 FNNLIQQLCANDLMPKAEELYREMGEIPGANPDEYTYVLLIDSCFEQSRADDAAEYFGKM 1091
FNNLI++LC N + +AEE+Y EM E G +PDE+TY LL+D+CF ++RADD+A YF KM
Sbjct: 384 FNNLIERLCDNGRIVEAEEVYGEM-EGKGVSPDEFTYGLLMDACFRENRADDSAAYFRKM 442
Query: 1090 VESGLKPNLATYNKVVDGLIKAGKIDEANGFFSQMIVKLRLDAANFEVMLRALCEAAKLD 911
V+SGL+PNLA YN++VDGL+K GKIDEA GFF M+ KL++D A+++ M++ L + +LD
Sbjct: 443 VDSGLRPNLAVYNRLVDGLVKVGKIDEAKGFFELMVKKLKMDVASYQFMMKVLSDEGRLD 502
Query: 910 EVLKLVSEMLKDEKVGLNSEMDEFVRDALRKEGREGDL 797
E+L++V +L D V + E EFV+ LRKEGRE +L
Sbjct: 503 EMLQIVDTLLDDNGVDFDEEFQEFVKGELRKEGREEEL 540