BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00001234
         (1115 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABC86742.1| RNA recognition motif-containing protein [Vitis p...   195   1e-47
ref|XP_002271789.1| PREDICTED: 33 kDa ribonucleoprotein, chlorop...   193   6e-47
ref|XP_003556209.1| PREDICTED: uncharacterized protein LOC100803...   189   1e-45
ref|XP_003536377.1| PREDICTED: RNA-binding protein 7-like [Glyci...   186   1e-44
ref|XP_003592001.1| Peptidyl-prolyl cis-trans isomerase [Medicag...   179   1e-42

>gb|ABC86742.1| RNA recognition motif-containing protein [Vitis pseudoreticulata]
          Length = 194

 Score =  195 bits (496), Expect = 1e-47
 Identities = 108/188 (57%), Positives = 127/188 (67%), Gaps = 12/188 (6%)
 Frame = +1

Query: 142 TVYVGNLDERVTDKVLYEILVQAGRIVDLHIPLDKDTNRHKGFAFAEYETEEIADYAVRL 321
           +VY+GNLDERV+D+VLY+IL+QAGR+VDL+IP DK+T+R KGFAFAEYETEEIADYAV+L
Sbjct: 8   SVYIGNLDERVSDRVLYDILIQAGRVVDLYIPRDKETDRPKGFAFAEYETEEIADYAVKL 67

Query: 322 FSGLVTLYNRTLRFGISGQDKSSQKVSTHILPMNSLPNLSSHPPQLNYTGNSQRSSR--- 492
           FSGLVTLYNRTL+F ISGQDK S    T     NS      HP   N   NSQ S     
Sbjct: 68  FSGLVTLYNRTLKFAISGQDKPSSAAITP--TSNSSLEPKPHPVPFNNMENSQHSMGLRT 125

Query: 493 ---------NYAQPELSPLGMVQPNGYRSSIIGNTPDYSRRVFGAALDSVSHSSHRPYEW 645
                    NYAQ   S   + QPN Y S + G++ DYSRRVFGA LDS+S +  R Y+ 
Sbjct: 126 PCRLAAHPVNYAQVPASSDTLHQPNRYSSQLDGHSYDYSRRVFGATLDSISRTRSRYYDS 185

Query: 646 KNPNVYPS 669
            NP  YPS
Sbjct: 186 SNPITYPS 193


>ref|XP_002271789.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
           gi|297734803|emb|CBI17037.3| unnamed protein product
           [Vitis vinifera]
          Length = 194

 Score =  193 bits (491), Expect = 6e-47
 Identities = 107/188 (56%), Positives = 127/188 (67%), Gaps = 12/188 (6%)
 Frame = +1

Query: 142 TVYVGNLDERVTDKVLYEILVQAGRIVDLHIPLDKDTNRHKGFAFAEYETEEIADYAVRL 321
           +VY+GNLDERV+D+VLY+IL+QAGR+VDL+IP DK+T+R KGFAFAEYETEEIADYAV+L
Sbjct: 8   SVYIGNLDERVSDRVLYDILIQAGRVVDLYIPRDKETDRPKGFAFAEYETEEIADYAVKL 67

Query: 322 FSGLVTLYNRTLRFGISGQDKSSQKVSTHILPMNSLPNLSSHPPQLNYTGNSQRSSR--- 492
           FSGLVTLYNRTL+F ISGQDK S    T     NS      HP   N   NSQ S     
Sbjct: 68  FSGLVTLYNRTLKFAISGQDKPSSAAITP--TSNSSLEPKPHPVPFNNMENSQHSMGLRT 125

Query: 493 ---------NYAQPELSPLGMVQPNGYRSSIIGNTPDYSRRVFGAALDSVSHSSHRPYEW 645
                    NYAQ   S   + QPN Y S + G++ DYSRRVFGA LDS+S +  R ++ 
Sbjct: 126 PCRLAAHPVNYAQVPASSDTLHQPNRYSSQLDGHSYDYSRRVFGATLDSISRTRSRYHDS 185

Query: 646 KNPNVYPS 669
            NP  YPS
Sbjct: 186 SNPITYPS 193


>ref|XP_003556209.1| PREDICTED: uncharacterized protein LOC100803118 [Glycine max]
          Length = 196

 Score =  189 bits (480), Expect = 1e-45
 Identities = 102/193 (52%), Positives = 129/193 (66%), Gaps = 12/193 (6%)
 Frame = +1

Query: 127 GNRDSTVYVGNLDERVTDKVLYEILVQAGRIVDLHIPLDKDTNRHKGFAFAEYETEEIAD 306
           GN + +VY+GNLDERVTD+VLY+IL+QAGR+VDLHIP DK++ + KGFAFAEYETEEIAD
Sbjct: 3   GNSNCSVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEIAD 62

Query: 307 YAVRLFSGLVTLYNRTLRFGISGQDKSSQKVSTHILP-MNSLPNLSSHPPQLNYTGNSQR 483
           YAVRLFSGL+TLYNRTL+F ISG+DK++   ST I P +NS      +P  +N + N Q 
Sbjct: 63  YAVRLFSGLITLYNRTLKFAISGRDKTTSNGSTAIAPTLNSSQRPRPYPVPINNSENFQH 122

Query: 484 SSRNYAQPELSPLGM-----------VQPNGYRSSIIGNTPDYSRRVFGAALDSVSHSSH 630
            +R       S   +            Q +GY S   GN  +YSRR FGA LDS+S S  
Sbjct: 123 PARLSTPDRFSDYPVNNSQVLPSRVTDQSSGYGSHYSGNNYEYSRRAFGATLDSISRSRS 182

Query: 631 RPYEWKNPNVYPS 669
           R ++  +P  YPS
Sbjct: 183 RHFDKSSPISYPS 195


>ref|XP_003536377.1| PREDICTED: RNA-binding protein 7-like [Glycine max]
          Length = 186

 Score =  186 bits (471), Expect = 1e-44
 Identities = 102/185 (55%), Positives = 127/185 (68%), Gaps = 13/185 (7%)
 Frame = +1

Query: 127 GNRDSTVYVGNLDERVTDKVLYEILVQAGRIVDLHIPLDKDTNRHKGFAFAEYETEEIAD 306
           GN + +VY+GNLDERVTD+VLY+IL+QAGR+VDLHIP DK++ + KGFAFAEYETEEIAD
Sbjct: 3   GNSNCSVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEIAD 62

Query: 307 YAVRLFSGLVTLYNRTLRFGISGQDKSSQKVSTHILP-MNSLPNLSSHPPQLNYTGNSQR 483
           YAVRLFSGL+TLYNRTL+F ISG+DK++   ST I P  NS      +P  +N + N Q 
Sbjct: 63  YAVRLFSGLITLYNRTLKFAISGRDKTTSNGSTAITPTSNSSQRPRPYPVSINNSENFQH 122

Query: 484 SSR------------NYAQPELSPLGMVQPNGYRSSIIGNTPDYSRRVFGAALDSVSHSS 627
           S+R            NY+Q  L      Q +GY S   GN  +YSRR FGA LDS+S S 
Sbjct: 123 SARLSTPDRFSDHPVNYSQ-VLPSRVTDQSSGYGSHYSGNNYEYSRRAFGATLDSISRSR 181

Query: 628 HRPYE 642
            R ++
Sbjct: 182 SRRFD 186


>ref|XP_003592001.1| Peptidyl-prolyl cis-trans isomerase [Medicago truncatula]
           gi|355481049|gb|AES62252.1| Peptidyl-prolyl cis-trans
           isomerase [Medicago truncatula]
          Length = 200

 Score =  179 bits (453), Expect = 1e-42
 Identities = 104/196 (53%), Positives = 126/196 (64%), Gaps = 16/196 (8%)
 Frame = +1

Query: 127 GNRDSTVYVGNLDERVTDKVLYEILVQAGRIVDLHIPLDKDTNRHKGFAFAEYETEEIAD 306
           GN   TVY+GNLDERVTD++LY+IL+QAGR+VDLHIP DK++ + KGFAFAEYETEEIAD
Sbjct: 3   GNSSCTVYIGNLDERVTDRILYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEIAD 62

Query: 307 YAVRLFSGLVTLYNRTLRFGISGQDKSSQKVSTHILP-MNSLPNLSSHPPQLNYTGNSQR 483
           YAVRLFSGLVTLY RTL+F ISG+DK++   ST   P  NS      +P Q+N + N Q 
Sbjct: 63  YAVRLFSGLVTLYKRTLKFAISGRDKNTPNSSTATTPSSNSSQRPRPYPVQINSSENFQH 122

Query: 484 SSR------------NYAQ-PELSPLGMV--QPNGYRSSIIGNTPDYSRRVFGAALDSVS 618
           S+R            NY+Q  EL        Q N Y S   GN  D+SRR FG  LD+ S
Sbjct: 123 SARQSIPDRFSDRALNYSQVGELLGRNRATNQSNAYGSHFGGNHLDHSRRAFGEELDNAS 182

Query: 619 HSSHRPYEWKNPNVYP 666
            S  R  +  +P  YP
Sbjct: 183 RSRPRRPDTVSPISYP 198