BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00001216
         (1421 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285308.1| PREDICTED: sigma factor sigB regulation prot...   440   e-121
ref|XP_002510101.1| sigma factor sigb regulation protein rsbq, p...   440   e-121
ref|XP_002302409.1| predicted protein [Populus trichocarpa] gi|2...   426   e-117
pdb|4DNP|A Chain A, Crystal Structure Of Dad2                         423   e-116
gb|AFR68698.1| DAD2 [Petunia x hybrida]                               423   e-116

>ref|XP_002285308.1| PREDICTED: sigma factor sigB regulation protein rsbQ [Vitis vinifera]
          Length = 266

 Score =  440 bits (1132), Expect = e-121
 Identities = 211/262 (80%), Positives = 240/262 (91%)
 Frame = +1

Query: 226  ILEALNVRVVGNGEKYVVLAHGFGTDQSAWMKILPYFMSSYRIVLYDLVCAGSVNPDYFD 405
            +LEALNVRVVGNGE+ +VLAHGFGTDQSAW +ILPYF+  +RI+LYDLVCAGSVNPDYFD
Sbjct: 5    LLEALNVRVVGNGERVLVLAHGFGTDQSAWQRILPYFLPHFRIILYDLVCAGSVNPDYFD 64

Query: 406  FRRYTSLEAYVDDLLHILDALRVEKCAYVGHSVSAMIGILASIRRPNLFSKLILLGASPR 585
            FRRYT+L+A+VDDLL+ILDAL V++CAYVGHSVSAMIGILASIRRP LF+KL+L+GASPR
Sbjct: 65   FRRYTTLDAFVDDLLNILDALGVDRCAYVGHSVSAMIGILASIRRPELFTKLVLIGASPR 124

Query: 586  FLNDSDYHGGFEHGEIDKVFTAMKANYEAWVSGYAPLAVGADVPTAVREFSRTLFNMRPD 765
            FLND DYHGGFE GEI+KVF+AM+ANY+AWV G+APL+VGADVP AVREFSRTLFNMRPD
Sbjct: 125  FLNDHDYHGGFEEGEIEKVFSAMEANYDAWVHGFAPLSVGADVPAAVREFSRTLFNMRPD 184

Query: 766  ISLFVCQTVFTSDLRGYLGLVRVPCVIIQTAKDVSVPLKVANYLKTHLGGRTTVELLNTE 945
            I+LFV +T+F SDLRG LGLV+VPC IIQTAKDVSVP  VA YLK HLGGR TVE+LN E
Sbjct: 185  ITLFVSRTIFNSDLRGVLGLVKVPCCIIQTAKDVSVPTSVALYLKNHLGGRNTVEMLNVE 244

Query: 946  GHLPHLSAPAVLVPVLRRALTR 1011
            GHLPHLSAP +L PVLRRAL+R
Sbjct: 245  GHLPHLSAPMLLAPVLRRALSR 266


>ref|XP_002510101.1| sigma factor sigb regulation protein rsbq, putative [Ricinus
            communis] gi|223550802|gb|EEF52288.1| sigma factor sigb
            regulation protein rsbq, putative [Ricinus communis]
          Length = 266

 Score =  440 bits (1131), Expect = e-121
 Identities = 214/266 (80%), Positives = 240/266 (90%)
 Frame = +1

Query: 214  MTINILEALNVRVVGNGEKYVVLAHGFGTDQSAWMKILPYFMSSYRIVLYDLVCAGSVNP 393
            M   +LEALNVRVVG+G+K +VLAHGFGTDQSAW +ILP+F  +Y I+LYDLVCAGSVNP
Sbjct: 1    MGTTLLEALNVRVVGSGDKILVLAHGFGTDQSAWQRILPFFTQNYSIILYDLVCAGSVNP 60

Query: 394  DYFDFRRYTSLEAYVDDLLHILDALRVEKCAYVGHSVSAMIGILASIRRPNLFSKLILLG 573
            DYFDFRRYT+L+AYVDDLL+ILDALRV++CAYVGHSVSAMIGILASIRRP LFSKLIL+G
Sbjct: 61   DYFDFRRYTTLDAYVDDLLNILDALRVDRCAYVGHSVSAMIGILASIRRPELFSKLILIG 120

Query: 574  ASPRFLNDSDYHGGFEHGEIDKVFTAMKANYEAWVSGYAPLAVGADVPTAVREFSRTLFN 753
            ASPRFLND DYHGGFE  +I+ VFTAM+ANYEAWV+G+APLAVGADVP AVREFSRTLFN
Sbjct: 121  ASPRFLNDKDYHGGFERPDIENVFTAMEANYEAWVNGFAPLAVGADVPAAVREFSRTLFN 180

Query: 754  MRPDISLFVCQTVFTSDLRGYLGLVRVPCVIIQTAKDVSVPLKVANYLKTHLGGRTTVEL 933
            MRPDI+LFV +TVF SDLRG LGLV+VPC IIQTAKDVSVP  VA YL+ HLGGR TVE+
Sbjct: 181  MRPDITLFVSRTVFNSDLRGILGLVKVPCCIIQTAKDVSVPASVAEYLRIHLGGRNTVEI 240

Query: 934  LNTEGHLPHLSAPAVLVPVLRRALTR 1011
            L TEGHLPHLSAPA+L  VLRRAL+R
Sbjct: 241  LRTEGHLPHLSAPALLAQVLRRALSR 266


>ref|XP_002302409.1| predicted protein [Populus trichocarpa] gi|222844135|gb|EEE81682.1|
            predicted protein [Populus trichocarpa]
          Length = 266

 Score =  426 bits (1096), Expect = e-117
 Identities = 204/266 (76%), Positives = 235/266 (88%)
 Frame = +1

Query: 214  MTINILEALNVRVVGNGEKYVVLAHGFGTDQSAWMKILPYFMSSYRIVLYDLVCAGSVNP 393
            M  +IL+ALNVRV G G+K++V AHGFGTDQSAW +ILP+F   YR++L+DLVCAGSVNP
Sbjct: 1    MGSHILDALNVRVEGQGDKFLVFAHGFGTDQSAWQRILPFFTPYYRVILFDLVCAGSVNP 60

Query: 394  DYFDFRRYTSLEAYVDDLLHILDALRVEKCAYVGHSVSAMIGILASIRRPNLFSKLILLG 573
            DYF+FRRYT+LEAYVDDLL+ILD L V++C YVGHSVSAMIGILASIRRP LF+KLI++G
Sbjct: 61   DYFNFRRYTNLEAYVDDLLNILDTLGVDRCFYVGHSVSAMIGILASIRRPELFTKLIMIG 120

Query: 574  ASPRFLNDSDYHGGFEHGEIDKVFTAMKANYEAWVSGYAPLAVGADVPTAVREFSRTLFN 753
            ASPRFLND DYHGGFE  EI+ VF AM+ANYEAWV G+APLAVGADVP AVREFSRTLFN
Sbjct: 121  ASPRFLNDKDYHGGFEQEEIESVFVAMEANYEAWVKGFAPLAVGADVPAAVREFSRTLFN 180

Query: 754  MRPDISLFVCQTVFTSDLRGYLGLVRVPCVIIQTAKDVSVPLKVANYLKTHLGGRTTVEL 933
            MRPDI+LFV +TVF SDLRG LGLV+VPC +IQT+KDVSVP  VA YLK HLGG+ TVE+
Sbjct: 181  MRPDITLFVSRTVFNSDLRGILGLVKVPCCVIQTSKDVSVPASVAKYLKNHLGGKATVEM 240

Query: 934  LNTEGHLPHLSAPAVLVPVLRRALTR 1011
            L TEGHLPHLSAPA+L PV+RRAL+R
Sbjct: 241  LRTEGHLPHLSAPAMLAPVIRRALSR 266


>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
          Length = 269

 Score =  423 bits (1087), Expect = e-116
 Identities = 204/261 (78%), Positives = 232/261 (88%)
 Frame = +1

Query: 226  ILEALNVRVVGNGEKYVVLAHGFGTDQSAWMKILPYFMSSYRIVLYDLVCAGSVNPDYFD 405
            +L+ALNVRVVG+GE+ +VLAHGFGTDQSAW +ILP+F+  YR+VLYDLVCAGSVNPD+FD
Sbjct: 7    LLDALNVRVVGSGERVLVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAGSVNPDFFD 66

Query: 406  FRRYTSLEAYVDDLLHILDALRVEKCAYVGHSVSAMIGILASIRRPNLFSKLILLGASPR 585
            FRRYT+L+ YVDDLLHILDAL ++ CAYVGHSVSAMIGILASIRRP LFSKLIL+GASPR
Sbjct: 67   FRRYTTLDPYVDDLLHILDALGIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPR 126

Query: 586  FLNDSDYHGGFEHGEIDKVFTAMKANYEAWVSGYAPLAVGADVPTAVREFSRTLFNMRPD 765
            FLND DYHGGFE GEI+KVF+AM+ANYEAWV+G+APLAVGADVP AVREFSRTLFNMRPD
Sbjct: 127  FLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGADVPAAVREFSRTLFNMRPD 186

Query: 766  ISLFVCQTVFTSDLRGYLGLVRVPCVIIQTAKDVSVPLKVANYLKTHLGGRTTVELLNTE 945
            I+LFV +TVF SD+RG LGLV+VPC I QTA+D SVP  VA YLK HLGG+ TV  LN E
Sbjct: 187  ITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHLGGKNTVHWLNIE 246

Query: 946  GHLPHLSAPAVLVPVLRRALT 1008
            GHLPHLSAP +L   LRRAL+
Sbjct: 247  GHLPHLSAPTLLAQELRRALS 267


>gb|AFR68698.1| DAD2 [Petunia x hybrida]
          Length = 267

 Score =  423 bits (1087), Expect = e-116
 Identities = 204/261 (78%), Positives = 232/261 (88%)
 Frame = +1

Query: 226  ILEALNVRVVGNGEKYVVLAHGFGTDQSAWMKILPYFMSSYRIVLYDLVCAGSVNPDYFD 405
            +L+ALNVRVVG+GE+ +VLAHGFGTDQSAW +ILP+F+  YR+VLYDLVCAGSVNPD+FD
Sbjct: 5    LLDALNVRVVGSGERVLVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAGSVNPDFFD 64

Query: 406  FRRYTSLEAYVDDLLHILDALRVEKCAYVGHSVSAMIGILASIRRPNLFSKLILLGASPR 585
            FRRYT+L+ YVDDLLHILDAL ++ CAYVGHSVSAMIGILASIRRP LFSKLIL+GASPR
Sbjct: 65   FRRYTTLDPYVDDLLHILDALGIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPR 124

Query: 586  FLNDSDYHGGFEHGEIDKVFTAMKANYEAWVSGYAPLAVGADVPTAVREFSRTLFNMRPD 765
            FLND DYHGGFE GEI+KVF+AM+ANYEAWV+G+APLAVGADVP AVREFSRTLFNMRPD
Sbjct: 125  FLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGADVPAAVREFSRTLFNMRPD 184

Query: 766  ISLFVCQTVFTSDLRGYLGLVRVPCVIIQTAKDVSVPLKVANYLKTHLGGRTTVELLNTE 945
            I+LFV +TVF SD+RG LGLV+VPC I QTA+D SVP  VA YLK HLGG+ TV  LN E
Sbjct: 185  ITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHLGGKNTVHWLNIE 244

Query: 946  GHLPHLSAPAVLVPVLRRALT 1008
            GHLPHLSAP +L   LRRAL+
Sbjct: 245  GHLPHLSAPTLLAQELRRALS 265