BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00001192
         (1790 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004134625.1| PREDICTED: F-box protein SKIP19-like [Cucumi...   186   2e-44
ref|XP_002274093.1| PREDICTED: F-box protein SKIP19 [Vitis vinif...   185   4e-44
sp|Q9S9V9.1|FBL23_ARATH RecName: Full=Putative F-box/LRR-repeat ...   184   9e-44
ref|XP_002874843.1| hypothetical protein ARALYDRAFT_911810 [Arab...   177   6e-42
ref|XP_002526604.1| ubiquitin-protein ligase, putative [Ricinus ...   172   3e-40

>ref|XP_004134625.1| PREDICTED: F-box protein SKIP19-like [Cucumis sativus]
           gi|449490588|ref|XP_004158648.1| PREDICTED: F-box
           protein SKIP19-like [Cucumis sativus]
          Length = 311

 Score =  186 bits (472), Expect = 2e-44
 Identities = 110/253 (43%), Positives = 150/253 (59%), Gaps = 3/253 (1%)
 Frame = +1

Query: 238 RNWLDLPRDVMIIILSKLHTIDILYSVQRVCSSWRKLCKEPQFFCRIV---IPSRWEDCA 408
           RNWL+LP DV  +IL KL  ++IL   Q VCSSWRK+C++P  + R++    P  W D  
Sbjct: 15  RNWLELPVDVTSMILQKLGPVEILTYAQYVCSSWRKICEDPLMW-RVIDMRYPCDWWDMD 73

Query: 409 RLGADGLAELVKVAMDRSCGELVEFSLETRKQVVLIDLLFNVVERSNTLKYLRLDTCFTF 588
                 L EL + A+ RSCG+L+ F++E        DLL  + +  N L  LRL  C   
Sbjct: 74  Y----NLEELCRQAVKRSCGQLIHFNIE---HFGTDDLLLYITQSCNQLSRLRLVYCNRI 126

Query: 589 QSRSLWKQIARKIPLLEELEIHYDSFSVMAIEEVGRSCPNLHYFKLKGELPWYSRGDCNK 768
               L + ++ K+PLLE+LE+ + SF V  +E +G++CP L   KL  +  +Y R +C+K
Sbjct: 127 SDEGLVEAVS-KLPLLEDLELSFCSFDVETLETLGQNCPGLKSLKLNRQ--FYRRVECDK 183

Query: 769 MVFAIAESMPQLRRLSLIENGLTNDGLQAILDGCPHLEYLDLRKCLRVNLNFSLLKKSSD 948
              AIAE+MP LR L +  N LTN GL+AILDGC  LE LDLR C  +NL   L  K S+
Sbjct: 184 GALAIAENMPNLRHLHIFGNNLTNKGLEAILDGCSALESLDLRHCFNLNLAGQLGAKCSE 243

Query: 949 RIIDVRLPKDAID 987
           +I D+RLP D  D
Sbjct: 244 KIKDLRLPHDPTD 256


>ref|XP_002274093.1| PREDICTED: F-box protein SKIP19 [Vitis vinifera]
           gi|147853333|emb|CAN82327.1| hypothetical protein
           VITISV_041807 [Vitis vinifera]
           gi|297740788|emb|CBI30970.3| unnamed protein product
           [Vitis vinifera]
          Length = 321

 Score =  185 bits (469), Expect = 4e-44
 Identities = 106/253 (41%), Positives = 160/253 (63%)
 Frame = +1

Query: 229 EQVRNWLDLPRDVMIIILSKLHTIDILYSVQRVCSSWRKLCKEPQFFCRIVIPSRWEDCA 408
           E+ RNW +LPRDV  +ILSKL+ ++IL S Q VCS WRKLC+EP  +  I + +  + C 
Sbjct: 15  EEERNWQELPRDVTSMILSKLNAVEILSSAQFVCSFWRKLCREPMMWRNIDMHNLGDLCD 74

Query: 409 RLGADGLAELVKVAMDRSCGELVEFSLETRKQVVLIDLLFNVVERSNTLKYLRLDTCFTF 588
            LG D L E+ + A+DRS G+L+   ++        +LL  +++RS+ +++LRL +C+  
Sbjct: 75  -LGYD-LEEMARHAVDRSGGQLLSICID---DFATDNLLNYIIDRSSHIRHLRLVSCYGI 129

Query: 589 QSRSLWKQIARKIPLLEELEIHYDSFSVMAIEEVGRSCPNLHYFKLKGELPWYSRGDCNK 768
               L + I R +PLL E+++ Y SFS   +E +G+ CP L  F+L  +   +   +C++
Sbjct: 130 SDDGLSEGIKR-LPLLVEIDLCYCSFSKEVLEAIGQCCPRLKSFRLNCQGFRHPHIECDE 188

Query: 769 MVFAIAESMPQLRRLSLIENGLTNDGLQAILDGCPHLEYLDLRKCLRVNLNFSLLKKSSD 948
              AIA++MP L+ L L  N LTN+GL AILDGC HLE LDLR+C  VNL  +L K+ ++
Sbjct: 189 EALAIAQNMPGLKSLQLFGNKLTNNGLLAILDGCCHLESLDLRQCFNVNLGGNLAKRCAE 248

Query: 949 RIIDVRLPKDAID 987
           +I  +R P D+ D
Sbjct: 249 QIKILRYPNDSTD 261


>sp|Q9S9V9.1|FBL23_ARATH RecName: Full=Putative F-box/LRR-repeat protein 23
           gi|5732066|gb|AAD48965.1|AF147263_7 contains similarity
           to Medicago truncatula N7 protein (GB:Y17613)
           [Arabidopsis thaliana] gi|7267310|emb|CAB81092.1|
           AT4g05500 [Arabidopsis thaliana]
          Length = 449

 Score =  184 bits (466), Expect = 9e-44
 Identities = 112/271 (41%), Positives = 159/271 (58%), Gaps = 1/271 (0%)
 Frame = +1

Query: 178 MSSPVICTRMKKRKDTLEQVRNWLDLPRDVMIIILSKLHTIDILYSVQRVCSSWRKLCKE 357
           +SS  + + MK +K     +RNW +LP  +   IL +L  I+IL + Q+VC  W ++CK+
Sbjct: 164 LSSTPLPSLMKDKK-----LRNWAELPSKLTSSILLRLGAIEILQNAQKVCKPWHRVCKD 218

Query: 358 PQFFCRIVIPSRWEDCARLGADGLAELVKVAMDRSCGELVEFSLETRKQVVLIDLLFNVV 537
           P  + +I I +R  D A    D L  + + A+DRS G L+E  +         DL+  + 
Sbjct: 219 PSMWRKIDIDNR-NDRAAFKYD-LESMCRHAVDRSHGGLIEIEIW---YYGTNDLIMYIA 273

Query: 538 ERSNTLKYLRLDTCFTFQSRSLWKQIARKIPLLEELEIHYDSFSVMAIEEVGRSCPNLHY 717
           +RS+ LK L L  CF      + K ++ K+PLLE LE+ Y  FS  ++ ++GRSCPNL  
Sbjct: 274 DRSSNLKSLGLVRCFPITDEGVAKAVS-KVPLLEYLEVSYCLFSGESLRDIGRSCPNLKT 332

Query: 718 FKL-KGELPWYSRGDCNKMVFAIAESMPQLRRLSLIENGLTNDGLQAILDGCPHLEYLDL 894
            KL +     +S    +    AIAESMP+LR L L+ NGLTN GL AILDGCPHLE+LDL
Sbjct: 333 LKLNRAPEIMFSNSGFDDNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLDL 392

Query: 895 RKCLRVNLNFSLLKKSSDRIIDVRLPKDAID 987
           R+C  +NL   L K+  +RI D+R P D+ D
Sbjct: 393 RQCFNINLVGDLKKRCFERIKDLRCPNDSDD 423



 Score = 77.8 bits (190), Expect = 9e-12
 Identities = 39/68 (57%), Positives = 49/68 (72%)
 Frame = +1

Query: 778 AIAESMPQLRRLSLIENGLTNDGLQAILDGCPHLEYLDLRKCLRVNLNFSLLKKSSDRII 957
           AIAE+MP+LR L L  NGLTN  L+AILD C HL +LDLR+C  +NL   L K+ S+RI 
Sbjct: 24  AIAETMPELRHLKLFGNGLTNLRLEAILDNCVHLVHLDLRRCFNINLLGDLEKRCSERIR 83

Query: 958 DVRLPKDA 981
           D+R P D+
Sbjct: 84  DLRRPDDS 91


>ref|XP_002874843.1| hypothetical protein ARALYDRAFT_911810 [Arabidopsis lyrata subsp.
            lyrata] gi|297320680|gb|EFH51102.1| hypothetical protein
            ARALYDRAFT_911810 [Arabidopsis lyrata subsp. lyrata]
          Length = 610

 Score =  177 bits (450), Expect = 6e-42
 Identities = 110/258 (42%), Positives = 157/258 (60%), Gaps = 4/258 (1%)
 Frame = +1

Query: 229  EQVRNWLDLPRDVMIIILSKLHTIDILYSVQRVCSSWRKLCKEPQFFCRIVIPSRWEDCA 408
            E+VRNW +LP ++   IL +L TIDIL + Q+VC SWR++CK+P  + +I +    ++  
Sbjct: 342  EEVRNWAELPPELTSSILGRLGTIDILENAQKVCRSWRRVCKDPSMWRKIDM----DNLG 397

Query: 409  RLGADG--LAELVKVAMDRSCGELVEFSLETRKQVVLIDLLFNVVERSNTLKYLRLDTCF 582
             LGA G  L  + + A+DRS G LVE  +         +LL  + +RS+ L+ LRL  C+
Sbjct: 398  DLGAMGYDLEIMCRHAVDRSQGGLVEIDIW---YFGTDELLNYIADRSSNLRTLRLIMCY 454

Query: 583  TFQSRSLWKQIARKIPLLEELEIHYDSFSVMAIEEVGRSCPNLHYFKLKGEL-PWYSRGD 759
                    + +  K+PL+E LE+ + S S  +++ VG+SCPNL   KL  E  P ++  +
Sbjct: 455  PIADEGFIEAVV-KLPLIEYLELSHCSLSGESLKVVGQSCPNLKTLKLNSEPDPKFNDDE 513

Query: 760  CN-KMVFAIAESMPQLRRLSLIENGLTNDGLQAILDGCPHLEYLDLRKCLRVNLNFSLLK 936
             N +   AIAESMP+LR L L  N LTN GL AILDGCPHLE+LDLRKC  V+L   L K
Sbjct: 514  FNNEEALAIAESMPELRHLQLFGNILTNVGLNAILDGCPHLEHLDLRKCSNVDLTGDLEK 573

Query: 937  KSSDRIIDVRLPKDAIDG 990
            +  +RI D++ P D+  G
Sbjct: 574  RCVERIKDLKRPTDSTAG 591



 Score =  159 bits (401), Expect = 3e-36
 Identities = 99/259 (38%), Positives = 148/259 (57%), Gaps = 10/259 (3%)
 Frame = +1

Query: 238 RNWLDLPRDVMIIILSKLHTIDILYSVQRVCSSWRKLCKEPQFFCRIVIPSRWE-DCARL 414
           RNW +LP ++   IL +L  ++IL + Q+VC SWR++CK+P  + +IVI +    D  + 
Sbjct: 7   RNWAELPAELTSSILLRLGVVEILENAQKVCRSWRRVCKDPSMWRKIVIDNSGNRDIFKY 66

Query: 415 GADGLAELVKVAMDRSCGELVEFSLETRKQVVLIDLL-----FNVVERSNTLKYLRLDTC 579
             D +    + A+DRS G L+E  +E      L+D +      ++   S+ L+ LRL  C
Sbjct: 67  DLDSMC---RHAVDRSQGGLLEIDIEYFGTDKLLDYIADRFSLSLFSISSNLRSLRLVRC 123

Query: 580 FTFQSRSLWKQIARKIPLLEELEIHYDSFSVMAIEEVGRSCPNLHYFKL----KGELPWY 747
                + + + +  K+PLLE+LE+ Y SFS   +  VG+SCP+L   KL    + E    
Sbjct: 124 HQITDKGVAEAVV-KLPLLEDLEVSYCSFSGECLSVVGQSCPHLTTLKLNRRPRVEFVIN 182

Query: 748 SRGDCNKMVFAIAESMPQLRRLSLIENGLTNDGLQAILDGCPHLEYLDLRKCLRVNLNFS 927
            R   +    AIAESMP+LR L L+ N LTN GL AILD C HL++LDLR+C  +NL   
Sbjct: 183 MR---DHNAIAIAESMPELRHLQLLGNALTNTGLNAILDSCTHLDHLDLRQCYNINLVED 239

Query: 928 LLKKSSDRIIDVRLPKDAI 984
            +K+  +RI  +R P D+I
Sbjct: 240 FMKQCVERIKYLRCPNDSI 258


>ref|XP_002526604.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223534044|gb|EEF35763.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 305

 Score =  172 bits (435), Expect = 3e-40
 Identities = 109/253 (43%), Positives = 144/253 (56%)
 Frame = +1

Query: 229 EQVRNWLDLPRDVMIIILSKLHTIDILYSVQRVCSSWRKLCKEPQFFCRIVIPSRWEDCA 408
           +  RNW +LPRDV  +IL K+   DIL S Q VCSSW  +CK+P  +  + I     D  
Sbjct: 14  DSYRNWAELPRDVTALILDKVGAFDILGSAQFVCSSWNSVCKDPSMWRSVEIHPLC-DFW 72

Query: 409 RLGADGLAELVKVAMDRSCGELVEFSLETRKQVVLIDLLFNVVERSNTLKYLRLDTCFTF 588
            L  D L  L + A+DRS G L+  S+E         L+  + +RS+ LK LRL + +T 
Sbjct: 73  DLPFD-LEALCRNAVDRSRGGLISISIE---YFATDSLIKYIADRSSHLKRLRLLSSYTL 128

Query: 589 QSRSLWKQIARKIPLLEELEIHYDSFSVMAIEEVGRSCPNLHYFKLKGELPWYSRGDCNK 768
            S + + + A+K PLLEEL+I Y S S  A+  VG SCP L   KL  +       + N+
Sbjct: 129 -SDAAFSKAAKKFPLLEELDISYCSLSTEALVGVGISCPLLRSLKLNCQGYKRPHIESNE 187

Query: 769 MVFAIAESMPQLRRLSLIENGLTNDGLQAILDGCPHLEYLDLRKCLRVNLNFSLLKKSSD 948
              AI + MP LR L +  N LTNDG+QAILDGCPHLE+LDLR+C  V+L   L     +
Sbjct: 188 EALAIGQWMPHLRYLQIFGNKLTNDGVQAILDGCPHLEFLDLRQCFNVHLEGELGMLCGE 247

Query: 949 RIIDVRLPKDAID 987
           RI D+R P D  D
Sbjct: 248 RIKDLRRPDDPTD 260