BLASTX nr result
ID: Coptis25_contig00001171
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00001171
(1914 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004136610.1| PREDICTED: probable ADP-ribosylation factor ... 388 e-105
gb|ADN33979.1| GTPase activating protein [Cucumis melo subsp. melo] 384 e-104
ref|XP_003632552.1| PREDICTED: probable ADP-ribosylation factor ... 352 2e-94
emb|CBI31191.3| unnamed protein product [Vitis vinifera] 352 2e-94
ref|XP_002530953.1| HIV-1 rev binding protein, hrbl, putative [R... 313 1e-82
>ref|XP_004136610.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein
AGD14-like [Cucumis sativus]
gi|449522163|ref|XP_004168097.1| PREDICTED: probable
ADP-ribosylation factor GTPase-activating protein
AGD14-like [Cucumis sativus]
Length = 673
Score = 388 bits (996), Expect = e-105
Identities = 257/642 (40%), Positives = 322/642 (50%), Gaps = 93/642 (14%)
Frame = +1
Query: 1 NFWTFVCTTCSGIHREFTHRVKSVSMAKFTPQEVEALQRGGNQRARELFLKDWDLQRQRL 180
NFWTFVC TCSGIHREFTHRVKSVSMAKF+ QEVEALQ GGNQRARE++LKDWD QRQRL
Sbjct: 40 NFWTFVCMTCSGIHREFTHRVKSVSMAKFSFQEVEALQNGGNQRAREIYLKDWDFQRQRL 99
Query: 181 PDSSNVDRVREFIKNTYVDGKYAGGKTSDKPPRDLQSIRSLDDETRRAXXXXXXXXXXXX 360
P +SNV+++REFIKN YVD KYAGG+TS+KPPRD+QSIR +DETRRA
Sbjct: 100 PVNSNVEKIREFIKNVYVDRKYAGGRTSEKPPRDMQSIRIHEDETRRASSYHSYSQSPPY 159
Query: 361 XXXXXDRKYGKQVGVLSRKPGSDRG-YEGKISSFVYSPGRL----HEERFANEGXXXXXX 525
DRKYGKQ L+RKPGSDRG YEGK+S V+SPGRL +++RF NEG
Sbjct: 160 DYQYEDRKYGKQAASLTRKPGSDRGRYEGKVSGSVFSPGRLSDQTYDDRFVNEGYASRVS 219
Query: 526 XXXXXXXXXPFRSDNQSPNFQ--SKLSSTSQYPVKDILVEDKHPQTMGAYSDLNIAKGDS 699
PFRS SPNFQ S SS + +D+L ED Q ++ N D+
Sbjct: 220 DFSVSSGGDPFRSGAHSPNFQKDSGFSSPPFHCARDMLNEDTRHQISSMSAEAN-GHRDA 278
Query: 700 SGVRHTQRTVXXXXXXXXXXXXVT-----SGSLVDVVSEPAQSAGTQLGRMTPXXXXXXX 864
G+ QRT+ + S L D V EP A L +M
Sbjct: 279 YGISRPQRTMSSGSFGSIDSNSTSLKSYNSAGLTDGVLEPEPIAHNNLDKM---PSSQQS 335
Query: 865 XXXXXXXEIDLFSVEFLQK---SGASSIDLFEKPTTSSAPSQDHY--------------T 993
+ F F K S SS+DLF+ + AP D +
Sbjct: 336 SVPGVSISLSFFEEPFAPKPVSSATSSVDLFQSQASLPAPPVDLFQLSSASPSFCENQPQ 395
Query: 994 ENTTMVPSIDFFADITHQNLVAASLEQKPQAGLLPDNKGWATFDLPQQETSTIATKYVPH 1173
+ + S+ FF + Q+ A+L++ P +P N+GWATFD PQ +S ++ V
Sbjct: 396 QRSPPPQSLQFFPETNPQH--PATLDKMPLESAVPKNEGWATFDSPQTTSSVHSSVNVNA 453
Query: 1174 THIPS------------------AXXXXXXXXXXQW-PSVNYTSPGPFPSVDNQWHGSLH 1296
PS QW P+ NY + P +QWH +L
Sbjct: 454 VKNPSNVGAFGKLVPPNEGALGKFDPLVSSSAVVQWPPTPNYIAHDPSLLASSQWHNNLP 513
Query: 1297 EVQVLSGPTSTTGG-----------------------------LPSI------------- 1350
QV + TST LPS
Sbjct: 514 NAQVPAEVTSTDASWNAFEDAITDLSLQRGKQNTERQVPVQEFLPSSDGHLFFGVTEGER 573
Query: 1351 ---ATDQKSTNPFDLPYDSDLEPNSVLLNMNSLQAALPESQLPPSYIEDFNQPWFPSNTI 1521
T KSTNPFDLPYD D+E ++ L+M+SLQ+ALP +QLP S + +QPWF N
Sbjct: 574 GTQMTSGKSTNPFDLPYDPDMEQTNMFLDMSSLQSALPNAQLPSSLVGG-SQPWFSQNP- 631
Query: 1522 PPYVQAAPQGGLAYMTGEAPTPQFPNISSQGSVASLGGNPFA 1647
P++ A QGGL+ M G+AP Q NI+ SVAS+GGNPFA
Sbjct: 632 APFIPTAGQGGLSLMAGQAPGSQISNITPPESVASIGGNPFA 673
>gb|ADN33979.1| GTPase activating protein [Cucumis melo subsp. melo]
Length = 674
Score = 384 bits (985), Expect = e-104
Identities = 257/643 (39%), Positives = 327/643 (50%), Gaps = 94/643 (14%)
Frame = +1
Query: 1 NFWTFVCTTCSGIHREFTHRVKSVSMAKFTPQEVEALQRGGNQRARELFLKDWDLQRQRL 180
NFWTFVC TCSGIHREFTHRVKSVSMAKFT QEVEALQ GGNQRARE++LKDWD QRQRL
Sbjct: 40 NFWTFVCMTCSGIHREFTHRVKSVSMAKFTFQEVEALQNGGNQRAREIYLKDWDFQRQRL 99
Query: 181 PDSSNVDRVREFIKNTYVDGKYAGGKTSDKPPRDLQSIRSLDDETRRAXXXXXXXXXXXX 360
P +SNV+++REFIKN YVD KYAGG+TS+KPPRD+QS+R +DETRRA
Sbjct: 100 PVNSNVEKIREFIKNVYVDRKYAGGRTSEKPPRDMQSLRIHEDETRRASSYHSYSQSPPY 159
Query: 361 XXXXXDRKYGKQVGVLSRKPGSDRG-YEGKISSFVYSPGRL----HEERFANEGXXXXXX 525
DRKYGKQ L+RKPGSDRG YEGK+S V+SPGRL +++RFANEG
Sbjct: 160 DYQYEDRKYGKQAASLTRKPGSDRGRYEGKVSGSVFSPGRLSDQTYDDRFANEGYASRVS 219
Query: 526 XXXXXXXXXPFRSDNQSPNFQ--SKLSSTSQYPVKDILVEDKHPQTMGAYSDLNIAKGDS 699
PFRS SPNFQ S SS +D+L +D Q ++ N D+
Sbjct: 220 DFSVSSGGDPFRSGAHSPNFQKDSGFSSPPFPCARDMLNDDTRHQISSMSAEAN-GHRDA 278
Query: 700 SGVRHTQRTVXXXXXXXXXXXXVT-----SGSLVDVVSEPAQSAGTQLGRMTPXXXXXXX 864
G+ QRT+ + S + D V EP A L +M
Sbjct: 279 YGISRPQRTMSSGSFGSIDSNSTSLKSYNSAGVTDGVLEPEPIAHNNLDKM---PASQQS 335
Query: 865 XXXXXXXEIDLFSVEFLQK---SGASSIDLFEKPTTSSAPSQDHY--------------T 993
+ F F K + SS+DLF+ + AP D +
Sbjct: 336 SVPGVSISLSFFEEPFAPKPVSAVTSSVDLFQSQASLPAPPVDLFQLSSASPSFCENQPQ 395
Query: 994 ENTTMVPSIDFFADITHQNLVAASLEQKPQAGLLPDNKGWATFDLPQQETSTIAT----- 1158
+ + S+ FF + Q+ A+L++ P +P N+GWATFD PQ +S ++
Sbjct: 396 QRSPPPQSLQFFPETNPQH--PATLDKMPLESAVPKNEGWATFDSPQTTSSVHSSVNVNA 453
Query: 1159 -----------KYVPHTH---IPSAXXXXXXXXXXQWPSV-NYTSPGPFPSVDNQWHGSL 1293
K VP ++ + QWPS NY++ P +QWH +L
Sbjct: 454 VKNPSNESAFGKLVPPSNEGALGKFDPFVSSSAVVQWPSTPNYSAYDPSLLASSQWHTNL 513
Query: 1294 HEVQVLSGPTST----------------TGG-------------LPSI------------ 1350
QV + ST GG LPS
Sbjct: 514 PNAQVPAEVMSTDASWNAFEDAITDLSLQGGKQNTELQVPVQEFLPSSDGHLFFGVTEGE 573
Query: 1351 ----ATDQKSTNPFDLPYDSDLEPNSVLLNMNSLQAALPESQLPPSYIEDFNQPWFPSNT 1518
T KSTNPFDLPYD D+E ++ L+M+SLQ+ALP +QLP S + +QPWF N
Sbjct: 574 RGTQMTSGKSTNPFDLPYDPDMEQTNMFLDMSSLQSALPNAQLPSSLVGG-SQPWFSQNP 632
Query: 1519 IPPYVQAAPQGGLAYMTGEAPTPQFPNISSQGSVASLGGNPFA 1647
P++ A QGGL+ M G+AP Q NI+ SVAS+GGNPFA
Sbjct: 633 -APFIPTAAQGGLSLMAGQAPGSQISNITPPESVASIGGNPFA 674
>ref|XP_003632552.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein
AGD14-like [Vitis vinifera]
Length = 677
Score = 352 bits (904), Expect = 2e-94
Identities = 223/484 (46%), Positives = 268/484 (55%), Gaps = 41/484 (8%)
Frame = +1
Query: 1 NFWTFVCTTCSGIHREFTHRVKSVSMAKFTPQEVEALQRGGNQRARELFLKDWDLQRQRL 180
NFWTFVCTTCSGIHREFTHRVKSVSMAKFT QEVEALQ+GGNQRAREL+LKDWD QRQRL
Sbjct: 40 NFWTFVCTTCSGIHREFTHRVKSVSMAKFTSQEVEALQKGGNQRARELYLKDWDTQRQRL 99
Query: 181 PDSSNVDRVREFIKNTYVDGKYAGGKTSDKPPRDLQSIRSLDDETRRAXXXXXXXXXXXX 360
PD SNVD+VR+FIK+ YVD +YA GKTSDKPPRD Q++R D+ETRRA
Sbjct: 100 PDISNVDKVRDFIKSVYVDRRYAVGKTSDKPPRDTQNLRDRDEETRRASSYHSYSQSPPY 159
Query: 361 XXXXXDRKYGKQVGVLSRKPGSDRG-YEGKISSFVYSPGRL----HEERFANEGXXXXXX 525
DR+YGKQ VL+RKPGSDRG Y+GKISSFVYSPGRL +E+RFAN+G
Sbjct: 160 DYQYEDRRYGKQAAVLTRKPGSDRGLYDGKISSFVYSPGRLSDQMYEDRFANDG------ 213
Query: 526 XXXXXXXXXPFRSDNQSPNFQSKL--SSTSQYPVKDILVEDKHPQTMGAYSDLNIAKGDS 699
PFRS+ QSPNFQ + SS +P +DIL+ D QT+ + N +
Sbjct: 214 ------SGDPFRSNIQSPNFQKGIGFSSPPIHPSRDILIGDAQQQTINTVVEENSRR--- 264
Query: 700 SGVRHTQRTVXXXXXXXXXXXXVT-----SGSLVDVVSEPAQS-AGTQLGRMTPXXXXXX 861
G + QRT ++ S +L+DVVSEP QS G +++
Sbjct: 265 DGFQRPQRTTSSGSFGSFDSNSMSIKSANSSNLMDVVSEPEQSTGGAHQDKISELHALPR 324
Query: 862 XXXXXXXXEIDLFSVEFLQK---SGASSIDLFEKPTTSSAPSQD---------------H 987
+DLF F + S ASSIDLF+ P TSS PS D H
Sbjct: 325 SSVSGYPVSLDLFDAPFAPETVTSSASSIDLFQLPVTSSVPSVDLFQQSSVSSVSSMNPH 384
Query: 988 YTENTTMVPSIDFFADITHQNLVAASLEQKPQAGLLPDNKGWATFDLPQQETSTI-ATKY 1164
T+ + DFFA+I Q AA+L QK +P N+GWATFD P TS T+
Sbjct: 385 QASQTSPPSAFDFFAEINQQQ-SAATLHQKLPELSVPKNEGWATFDTPTPMTSIAGTTEN 443
Query: 1165 VPHTHIPSA--------XXXXXXXXXXQWPSV-NYTSPGPFPSVDNQWHGSLHEVQVLSG 1317
IPS QWP + + GP S+ N W LH VQ +
Sbjct: 444 CTPAKIPSTDGGPPGKLDSVLSIDASMQWPLFQDSNAHGPSSSMSNPWDQGLHNVQASAN 503
Query: 1318 PTST 1329
TST
Sbjct: 504 VTST 507
Score = 140 bits (352), Expect = 2e-30
Identities = 66/112 (58%), Positives = 83/112 (74%), Gaps = 1/112 (0%)
Frame = +1
Query: 1315 GPTSTTGGLPSIATDQKSTNPFDLPYDSDLEPNSVLLNMNSLQAALPES-QLPPSYIEDF 1491
GP+ +GG S TD+KS+NPFDLPYDSDLE +S+ L+M+SLQAALP + QLP ++
Sbjct: 566 GPSLPSGGTQSQGTDKKSSNPFDLPYDSDLEQSSMFLDMSSLQAALPSNPQLPSVFLGGV 625
Query: 1492 NQPWFPSNTIPPYVQAAPQGGLAYMTGEAPTPQFPNISSQGSVASLGGNPFA 1647
QPWFP + PY+ AAPQGGLAY+ G P+ Q PN +QG VAS+GGNPFA
Sbjct: 626 TQPWFPQKPVTPYIPAAPQGGLAYVAGSTPSSQLPNGQTQGPVASIGGNPFA 677
>emb|CBI31191.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 352 bits (904), Expect = 2e-94
Identities = 223/484 (46%), Positives = 268/484 (55%), Gaps = 41/484 (8%)
Frame = +1
Query: 1 NFWTFVCTTCSGIHREFTHRVKSVSMAKFTPQEVEALQRGGNQRARELFLKDWDLQRQRL 180
NFWTFVCTTCSGIHREFTHRVKSVSMAKFT QEVEALQ+GGNQRAREL+LKDWD QRQRL
Sbjct: 40 NFWTFVCTTCSGIHREFTHRVKSVSMAKFTSQEVEALQKGGNQRARELYLKDWDTQRQRL 99
Query: 181 PDSSNVDRVREFIKNTYVDGKYAGGKTSDKPPRDLQSIRSLDDETRRAXXXXXXXXXXXX 360
PD SNVD+VR+FIK+ YVD +YA GKTSDKPPRD Q++R D+ETRRA
Sbjct: 100 PDISNVDKVRDFIKSVYVDRRYAVGKTSDKPPRDTQNLRDRDEETRRASSYHSYSQSPPY 159
Query: 361 XXXXXDRKYGKQVGVLSRKPGSDRG-YEGKISSFVYSPGRL----HEERFANEGXXXXXX 525
DR+YGKQ VL+RKPGSDRG Y+GKISSFVYSPGRL +E+RFAN+G
Sbjct: 160 DYQYEDRRYGKQAAVLTRKPGSDRGLYDGKISSFVYSPGRLSDQMYEDRFANDG------ 213
Query: 526 XXXXXXXXXPFRSDNQSPNFQSKL--SSTSQYPVKDILVEDKHPQTMGAYSDLNIAKGDS 699
PFRS+ QSPNFQ + SS +P +DIL+ D QT+ + N +
Sbjct: 214 ------SGDPFRSNIQSPNFQKGIGFSSPPIHPSRDILIGDAQQQTINTVVEENSRR--- 264
Query: 700 SGVRHTQRTVXXXXXXXXXXXXVT-----SGSLVDVVSEPAQS-AGTQLGRMTPXXXXXX 861
G + QRT ++ S +L+DVVSEP QS G +++
Sbjct: 265 DGFQRPQRTTSSGSFGSFDSNSMSIKSANSSNLMDVVSEPEQSTGGAHQDKISELHALPR 324
Query: 862 XXXXXXXXEIDLFSVEFLQK---SGASSIDLFEKPTTSSAPSQD---------------H 987
+DLF F + S ASSIDLF+ P TSS PS D H
Sbjct: 325 SSVSGYPVSLDLFDAPFAPETVTSSASSIDLFQLPVTSSVPSVDLFQQSSVSSVSSMNPH 384
Query: 988 YTENTTMVPSIDFFADITHQNLVAASLEQKPQAGLLPDNKGWATFDLPQQETSTI-ATKY 1164
T+ + DFFA+I Q AA+L QK +P N+GWATFD P TS T+
Sbjct: 385 QASQTSPPSAFDFFAEINQQQ-SAATLHQKLPELSVPKNEGWATFDTPTPMTSIAGTTEN 443
Query: 1165 VPHTHIPSA--------XXXXXXXXXXQWPSV-NYTSPGPFPSVDNQWHGSLHEVQVLSG 1317
IPS QWP + + GP S+ N W LH VQ +
Sbjct: 444 CTPAKIPSTDGGPPGKLDSVLSIDASMQWPLFQDSNAHGPSSSMSNPWDQGLHNVQASAN 503
Query: 1318 PTST 1329
TST
Sbjct: 504 VTST 507
Score = 135 bits (340), Expect = 4e-29
Identities = 64/106 (60%), Positives = 79/106 (74%), Gaps = 1/106 (0%)
Frame = +1
Query: 1333 GGLPSIATDQKSTNPFDLPYDSDLEPNSVLLNMNSLQAALPES-QLPPSYIEDFNQPWFP 1509
GG S TD+KS+NPFDLPYDSDLE +S+ L+M+SLQAALP + QLP ++ QPWFP
Sbjct: 590 GGTQSQGTDKKSSNPFDLPYDSDLEQSSMFLDMSSLQAALPSNPQLPSVFLGGVTQPWFP 649
Query: 1510 SNTIPPYVQAAPQGGLAYMTGEAPTPQFPNISSQGSVASLGGNPFA 1647
+ PY+ AAPQGGLAY+ G P+ Q PN +QG VAS+GGNPFA
Sbjct: 650 QKPVTPYIPAAPQGGLAYVAGSTPSSQLPNGQTQGPVASIGGNPFA 695
>ref|XP_002530953.1| HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
gi|223529468|gb|EEF31425.1| HIV-1 rev binding protein,
hrbl, putative [Ricinus communis]
Length = 692
Score = 313 bits (802), Expect = 1e-82
Identities = 202/479 (42%), Positives = 258/479 (53%), Gaps = 35/479 (7%)
Frame = +1
Query: 1 NFWTFVCTTCSGIHREFTHRVKSVSMAKFTPQEVEALQRGGNQRARELFLKDWDLQRQRL 180
NFWTFVC TCSGIHREFTHRVKSVSM+KFT Q+VEALQ GGNQRARE++LKDWD QRQRL
Sbjct: 40 NFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQDVEALQNGGNQRAREIYLKDWDQQRQRL 99
Query: 181 PDSSNVDRVREFIKNTYVDGKYAGGKTSDKPPRDLQSIRSLDDETRRAXXXXXXXXXXXX 360
PD+SNVD++REFIK+ YVD KYAGGKT DKPPRDLQ +RS +DETRRA
Sbjct: 100 PDNSNVDKIREFIKSIYVDKKYAGGKTHDKPPRDLQRMRSHEDETRRASSYHSYSQSPPY 159
Query: 361 XXXXXDRKYGKQVGVLSRKPGSDRG-YEGKISSFVYSPGRL----HEERFANEGXXXXXX 525
DR+YGKQ G+L+RKPGSDRG Y GK+SSF+ SP RL E+RFANEG
Sbjct: 160 DYQYEDRRYGKQAGILTRKPGSDRGLYVGKMSSFICSPTRLSDRMFEDRFANEGSVSGVS 219
Query: 526 XXXXXXXXXPFRSDNQSPNFQSKLSSTSQYPVKDILVEDKHPQTMGAYSDLNIAKGDSSG 705
+ +SPN+ S T K+IL ED + + +S+ N +G + G
Sbjct: 220 DYSVSSGGELVTT--ESPNYSSPPIQTP----KNILGEDVQQRRIDLFSEANFKRG-AEG 272
Query: 706 VRHTQRTVXXXXXXXXXXXXVT-----SGSLVDVVSEPAQSAGTQLGRMTPXXXXXXXXX 870
+ H+QR+ V+ S SL D+VSEP Q+ GT +M
Sbjct: 273 IPHSQRSASLGSIGSFDSNSVSVKSFNSSSLADIVSEPEQATGTHQDKM---PTFQRMAG 329
Query: 871 XXXXXEIDLFSVEFLQKSGA---SSIDLFEKPTTSSAPSQD---------------HYTE 996
+D F + K+ A S IDLF+ TS AP + + T
Sbjct: 330 SGSYDSLDHFKAPVVPKADASVGSPIDLFQLSATSPAPPVNLFEISPLDPAPAMNAYQTP 389
Query: 997 NTTMVPSIDFFADITHQNLVAASLEQKPQAGLLPDNKGWATFDLPQQETSTIA----TKY 1164
T++ SID F IT Q + + + P+ +P N+GWATFD+ Q TST T +
Sbjct: 390 QTSLPSSIDLFGGITQQQSINSVDQNSPELS-IPKNEGWATFDI-QPTTSTQGNGNLTPF 447
Query: 1165 VPHTHIPSA---XXXXXXXXXXQWPSVNYTSPGPFPSVDNQWHGSLHEVQVLSGPTSTT 1332
V T + S+ QWP +S S W+ LH V+V ++ T
Sbjct: 448 VISTSMYSSAQFDQVSSSDKGMQWPPFQNSSVEESASGSAPWNNGLHNVEVPDNTSAQT 506
Score = 119 bits (297), Expect = 4e-24
Identities = 57/102 (55%), Positives = 75/102 (73%), Gaps = 1/102 (0%)
Frame = +1
Query: 1345 SIATDQKSTNPFDLPYDSDLEPNSVLLNMNSLQAALPESQLPPSYI-EDFNQPWFPSNTI 1521
S A + KS NPFDLPYDS+LEP ++ L+M+SLQAALP++ L +++ +PWFP + +
Sbjct: 594 SHANNHKSNNPFDLPYDSELEPGNMFLDMSSLQAALPDAHLQSAFLGSGMTEPWFPQDPV 653
Query: 1522 PPYVQAAPQGGLAYMTGEAPTPQFPNISSQGSVASLGGNPFA 1647
YV AAPQGGLAYM G+AP PN+ +QG VA +GGNPFA
Sbjct: 654 TTYVPAAPQGGLAYMGGQAPN---PNVQTQGPVAFVGGNPFA 692