BLASTX nr result

ID: Coptis25_contig00001120 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00001120
         (1532 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277654.1| PREDICTED: uncharacterized protein LOC100261...   110   1e-21
emb|CAN78371.1| hypothetical protein VITISV_043533 [Vitis vinifera]   101   6e-19
ref|XP_002311833.1| predicted protein [Populus trichocarpa] gi|2...    96   2e-17
ref|XP_004173131.1| PREDICTED: uncharacterized LOC101204739 [Cuc...    90   1e-15
ref|XP_004150899.1| PREDICTED: uncharacterized protein LOC101204...    90   1e-15

>ref|XP_002277654.1| PREDICTED: uncharacterized protein LOC100261454 [Vitis vinifera]
          Length = 491

 Score =  110 bits (274), Expect = 1e-21
 Identities = 76/162 (46%), Positives = 85/162 (52%), Gaps = 31/162 (19%)
 Frame = +2

Query: 695  VQVMNNMMHHGFNGIDITHGLGGENVGQM-----GNIPMPQMGNFPMGHMGN-IPAVQGL 856
            V  +NNM +   N   I  GLGG N+GQM     GN+PM QMGN  M  MGN +PAVQGL
Sbjct: 332  VHAINNMPNAMHNMAAI-RGLGGGNMGQMPMGPMGNMPMGQMGNMSMAQMGNNMPAVQGL 390

Query: 857  PAAPMNAGAGG--------------YFQGAAPEYHAGNPYH------XXXXXXXXXXXXX 976
            PA  +NAG  G              YFQGA PE  AGNPY+                   
Sbjct: 391  PAGAINAGGAGGGAPPGYGGGVPPGYFQGAGPEVMAGNPYYQQQLAAMMMNQQRAHGNER 450

Query: 977  XXXXXYARPPPAV----AYTPSPEPYT-YFSDENTSSSCNVM 1087
                 YARPPPAV     Y P P+PYT +FSDENT SSCNVM
Sbjct: 451  FQPMMYARPPPAVNYLPPYPPQPDPYTHFFSDENT-SSCNVM 491


>emb|CAN78371.1| hypothetical protein VITISV_043533 [Vitis vinifera]
          Length = 136

 Score =  101 bits (251), Expect = 6e-19
 Identities = 65/137 (47%), Positives = 73/137 (53%), Gaps = 26/137 (18%)
 Frame = +2

Query: 755  LGGENVGQMGNIPMPQMGNFPMGHMGN-IPAVQGLPAAPMNAGA--------------GG 889
            +G   +G MGN+PM QMGN  M  MGN +PAVQGLPA  +NAG                G
Sbjct: 1    MGQMPMGPMGNMPMGQMGNMSMAQMGNNMPAVQGLPAGAINAGGVSGGAPPGYGGGVPPG 60

Query: 890  YFQGAAPEYHAGNPYH------XXXXXXXXXXXXXXXXXXYARPPPAV----AYTPSPEP 1039
            YFQGA PE  AGNPY+                        YARPPPAV     Y P P+P
Sbjct: 61   YFQGAGPEVMAGNPYYQQQLAAMMMNQQRAHGNERFQPMMYARPPPAVNYLPPYPPQPDP 120

Query: 1040 YT-YFSDENTSSSCNVM 1087
            YT +FSDENT SSCNVM
Sbjct: 121  YTHFFSDENT-SSCNVM 136


>ref|XP_002311833.1| predicted protein [Populus trichocarpa] gi|222851653|gb|EEE89200.1|
            predicted protein [Populus trichocarpa]
          Length = 505

 Score = 96.3 bits (238), Expect = 2e-17
 Identities = 72/183 (39%), Positives = 78/183 (42%), Gaps = 56/183 (30%)
 Frame = +2

Query: 707  NNMMHHGFNGIDITHGLGGE-------------NVGQMGNIPMPQMGNFPMGHMGNIPAV 847
            NNM  +G  G    +G+GG              N+GQMG +PM QMG  PMG MG IPAV
Sbjct: 326  NNMQMNG--GKKGNNGVGGALNDGFQKVGGPQVNMGQMGGMPMGQMGGMPMGQMGGIPAV 383

Query: 848  QGLPAA-----PMNAGAGGYFQGAAPEYHAGNPYH---------------XXXXXXXXXX 967
            QGLPAA         GA GYFQGA P+   GNPY                          
Sbjct: 384  QGLPAAAAMGGAAGGGANGYFQGAGPDLLPGNPYQQQQQQQHIAAMTAMMNQQRAAMGGG 443

Query: 968  XXXXXXXXYARPPPAVAYT---PSPEPYTY--------------------FSDENTSSSC 1078
                    YARPPPAV Y    P P PY Y                    FSDENT SSC
Sbjct: 444  NERFQPMMYARPPPAVNYMPQHPQPHPYPYPYPYPHPHPHPNGNDQYTNFFSDENT-SSC 502

Query: 1079 NVM 1087
            NVM
Sbjct: 503  NVM 505


>ref|XP_004173131.1| PREDICTED: uncharacterized LOC101204739 [Cucumis sativus]
          Length = 550

 Score = 90.1 bits (222), Expect = 1e-15
 Identities = 72/163 (44%), Positives = 74/163 (45%), Gaps = 34/163 (20%)
 Frame = +2

Query: 701  VMNNMMHHGFNGIDITHGL--GGENVGQMG-----------NIPMPQMGNFPMGHMGNIP 841
            VMN    HGF  I    GL  GG   G  G           N+PM QMGN  M  MG+IP
Sbjct: 390  VMNGGGPHGFPSIGGHPGLPAGGLAAGGAGGGGGGGRPMNLNMPMAQMGNMQMSQMGSIP 449

Query: 842  AVQGLPAAPMNAGAGG--YFQGA--APEYHAGNPY----HXXXXXXXXXXXXXXXXXXYA 997
            AVQGLPA  MN G  G  YFQGA    E   GNPY                       YA
Sbjct: 450  AVQGLPAPAMNGGGPGSAYFQGAPGPAEAMGGNPYQQQQQYMAAMNHQRAAMANQAMMYA 509

Query: 998  RPPPAVAYTPSPEPYTY-------------FSDENTSSSCNVM 1087
            RPPPAV Y P P PY Y             FSDENT SSCNVM
Sbjct: 510  RPPPAVNYLP-PYPYPYPPPPPAGDNYTHFFSDENT-SSCNVM 550


>ref|XP_004150899.1| PREDICTED: uncharacterized protein LOC101204739 [Cucumis sativus]
          Length = 539

 Score = 90.1 bits (222), Expect = 1e-15
 Identities = 72/163 (44%), Positives = 74/163 (45%), Gaps = 34/163 (20%)
 Frame = +2

Query: 701  VMNNMMHHGFNGIDITHGL--GGENVGQMG-----------NIPMPQMGNFPMGHMGNIP 841
            VMN    HGF  I    GL  GG   G  G           N+PM QMGN  M  MG+IP
Sbjct: 379  VMNGGGPHGFPSIGGHPGLPAGGLAAGGAGGGGGGGRPMNLNMPMAQMGNMQMSQMGSIP 438

Query: 842  AVQGLPAAPMNAGAGG--YFQGA--APEYHAGNPY----HXXXXXXXXXXXXXXXXXXYA 997
            AVQGLPA  MN G  G  YFQGA    E   GNPY                       YA
Sbjct: 439  AVQGLPAPAMNGGGPGSAYFQGAPGPAEAMGGNPYQQQQQYMAAMNHQRAAMANQAMMYA 498

Query: 998  RPPPAVAYTPSPEPYTY-------------FSDENTSSSCNVM 1087
            RPPPAV Y P P PY Y             FSDENT SSCNVM
Sbjct: 499  RPPPAVNYLP-PYPYPYPPPPPAGDNYTHFFSDENT-SSCNVM 539


Top