BLASTX nr result
ID: Coptis25_contig00001082
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00001082
(1798 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002270571.2| PREDICTED: ribulose bisphosphate carboxylase... 734 0.0
ref|XP_002524206.1| Ribulose bisphosphate carboxylase/oxygenase ... 732 0.0
gb|ABK96359.1| unknown [Populus trichocarpa x Populus deltoides] 740 0.0
ref|NP_001240152.1| ribulose bisphosphate carboxylase/oxygenase ... 731 0.0
gb|ABK95600.1| unknown [Populus trichocarpa] 733 0.0
>ref|XP_002270571.2| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Vitis vinifera]
gi|297740331|emb|CBI30513.3| unnamed protein product
[Vitis vinifera]
Length = 474
Score = 734 bits (1896), Expect(2) = 0.0
Identities = 359/438 (81%), Positives = 397/438 (90%)
Frame = -1
Query: 1660 MAAPFSTLGAVNSALVNLPSSNTGASLPTSSFFGTNLKKAISSGYTNQKVSSRSFKVVXX 1481
MAA STLGAVN A +NL S TGAS+P+S+F G +LKK +SS + + SS +FKVV
Sbjct: 1 MAATISTLGAVNRAPLNLNGSGTGASVPSSAFLGNSLKK-VSSKIAHPRTSSGNFKVVAE 59
Query: 1480 XXXXXXKGQDRWKGLGTDISDDQQDITRGKGLVDSLFQAPSGAGTHDAIMSSYDYISQGL 1301
+D+WKGL D SDDQQDITRGKG+VDSLFQAP +GTH A+MSSYDYIS GL
Sbjct: 60 VDEEKQTSKDKWKGLAFDESDDQQDITRGKGMVDSLFQAPMDSGTHYAVMSSYDYISTGL 119
Query: 1300 REYNFDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 1121
R+YN DN MDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNLDNTMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 1120 AKMGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGG 941
AKMG+NPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGR+GG
Sbjct: 180 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGG 239
Query: 940 TTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 761
TTQYTVNNQMVNATLMNIADNPT+VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 760 MEKFYWAPTRDDRIGVCTGIFKTDNIAPEDVIKIVDTFPGQSIDFFGALRARVYDDEVRK 581
MEKFYWAPTR+DRIGVCTGIF++DNI ED++K+VDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPTREDRIGVCTGIFRSDNIPKEDMVKLVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 580 WISGVGVDGIGKKLVNSKDGPPTFEQPKMTVEKLLEYGYMIVQEQDNVKRVQLADKYLNE 401
W++ VGV+GIGKKLVNSK+GPPTFE+PKMT++KLLEYG M+VQEQ+NVKRVQLADKYL+E
Sbjct: 360 WVASVGVEGIGKKLVNSKEGPPTFEKPKMTLDKLLEYGNMLVQEQENVKRVQLADKYLSE 419
Query: 400 ASLGEANADAINSGNFFG 347
A+LG+AN DAI SG+F+G
Sbjct: 420 AALGDANEDAIKSGSFYG 437
Score = 77.0 bits (188), Expect(2) = 0.0
Identities = 33/38 (86%), Positives = 37/38 (97%)
Frame = -2
Query: 315 GKAAQQVNVPVPEGCTDPSAQNFDPTARSDNGSCLYEL 202
GKAAQQVN+PVPEGCTDPSA NFDPTARSD+GSCLY++
Sbjct: 437 GKAAQQVNLPVPEGCTDPSANNFDPTARSDDGSCLYQI 474
>ref|XP_002524206.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
gi|223536483|gb|EEF38130.1| Ribulose bisphosphate
carboxylase/oxygenase activase 1, chloroplast precursor,
putative [Ricinus communis]
Length = 473
Score = 732 bits (1889), Expect(2) = 0.0
Identities = 358/438 (81%), Positives = 392/438 (89%)
Frame = -1
Query: 1660 MAAPFSTLGAVNSALVNLPSSNTGASLPTSSFFGTNLKKAISSGYTNQKVSSRSFKVVXX 1481
MAA ST+GAVN + L S G+S+PTS+FFG++LKK S ++ K SS SFKVV
Sbjct: 1 MAATISTVGAVNRTPLALNGSGAGSSVPTSAFFGSSLKKLNSPRFS--KFSSGSFKVVSE 58
Query: 1480 XXXXXXKGQDRWKGLGTDISDDQQDITRGKGLVDSLFQAPSGAGTHDAIMSSYDYISQGL 1301
DRW GL D+SDDQQDITRGKG+VDSLFQAP AGTH A+MSSY+Y+S GL
Sbjct: 59 YDEEKQTSADRWGGLAYDMSDDQQDITRGKGMVDSLFQAPQDAGTHYAVMSSYEYLSTGL 118
Query: 1300 REYNFDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 1121
R+YN DNNMDGFYIAPAFMDKLVVHITKNFMTLPNIK+PLILGIWGGKGQGKSFQCELVF
Sbjct: 119 RQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVF 178
Query: 1120 AKMGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGG 941
AKMG+NPIMMSAGELESGNAGEPAKLIRQRYREAAD+I+KGKMCCLFINDLDAGAGRMGG
Sbjct: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGG 238
Query: 940 TTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 761
TTQYTVNNQMVNATLMNIADNPT+VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 298
Query: 760 MEKFYWAPTRDDRIGVCTGIFKTDNIAPEDVIKIVDTFPGQSIDFFGALRARVYDDEVRK 581
MEKFYWAPTR+DRIGVCTGIFKTD +APEDV+K+VDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 299 MEKFYWAPTREDRIGVCTGIFKTDGVAPEDVVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
Query: 580 WISGVGVDGIGKKLVNSKDGPPTFEQPKMTVEKLLEYGYMIVQEQDNVKRVQLADKYLNE 401
WI GVGV+ IGK LVNSK+GPPTFEQPKMT+EKLLEYG M+VQEQ+NVKRVQLADKY++E
Sbjct: 359 WIGGVGVEKIGKSLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYMSE 418
Query: 400 ASLGEANADAINSGNFFG 347
A+LGEAN D+I G F+G
Sbjct: 419 AALGEANQDSIERGTFYG 436
Score = 75.5 bits (184), Expect(2) = 0.0
Identities = 32/37 (86%), Positives = 36/37 (97%)
Frame = -2
Query: 315 GKAAQQVNVPVPEGCTDPSAQNFDPTARSDNGSCLYE 205
GKAAQQVN+PVPEGCTDP+AQNFDPTARSD+GSC Y+
Sbjct: 436 GKAAQQVNIPVPEGCTDPTAQNFDPTARSDDGSCTYK 472
>gb|ABK96359.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 476
Score = 740 bits (1911), Expect(2) = 0.0
Identities = 361/439 (82%), Positives = 398/439 (90%), Gaps = 1/439 (0%)
Frame = -1
Query: 1660 MAAPFSTLGAVNSALVNLPSSNTGASLPTSSFFGTNLKKAISSGYTNQKVSSRSFKVVXX 1481
MAA ST+GAVN+A + L S G+++P S+FFG +LKK SS +TN K+SS SFKVV
Sbjct: 1 MAATISTVGAVNTAPLALNGSGAGSTVPNSAFFGNSLKKVSSSRFTNSKISSGSFKVVAE 60
Query: 1480 XXXXXXKGQDRWKGLGTDISDDQQDITRGKGLVDSLFQAPSGAGTHDAIMSSYDYISQGL 1301
+DRW GL TD+SDDQQDITRGKG+VDSLFQAP G GTH+ I+SSY+Y+SQGL
Sbjct: 61 YDEKKQTDKDRWGGLVTDMSDDQQDITRGKGMVDSLFQAPQGTGTHNPILSSYEYLSQGL 120
Query: 1300 REYNFDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 1121
R YN DNNMDG+YIAPAFMDKLVVHI+KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVF
Sbjct: 121 RTYNLDNNMDGYYIAPAFMDKLVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVF 180
Query: 1120 AKMGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIRK-GKMCCLFINDLDAGAGRMG 944
AKMG+NPIMMSAGELESGNAGEPAKLIRQRYREAADII+K GKMCCLFINDLDAGAGR+G
Sbjct: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRLG 240
Query: 943 GTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 764
GTTQYTVNNQMVNATLMNIADNPT+VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDG
Sbjct: 241 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDG 300
Query: 763 RMEKFYWAPTRDDRIGVCTGIFKTDNIAPEDVIKIVDTFPGQSIDFFGALRARVYDDEVR 584
RMEKFYWAPTRDDRIGVC GIFK+D IA ED++K+VDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 301 RMEKFYWAPTRDDRIGVCIGIFKSDKIAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 360
Query: 583 KWISGVGVDGIGKKLVNSKDGPPTFEQPKMTVEKLLEYGYMIVQEQDNVKRVQLADKYLN 404
KWISGVGVD IGKKLVNS+DGPPTFEQPKMT+EKLLEYG M+VQEQ+NVKRVQLADKYL+
Sbjct: 361 KWISGVGVDSIGKKLVNSRDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLS 420
Query: 403 EASLGEANADAINSGNFFG 347
EASLGEAN D+I+ G F+G
Sbjct: 421 EASLGEANQDSIDRGTFYG 439
Score = 66.6 bits (161), Expect(2) = 0.0
Identities = 29/37 (78%), Positives = 33/37 (89%)
Frame = -2
Query: 315 GKAAQQVNVPVPEGCTDPSAQNFDPTARSDNGSCLYE 205
G+AAQQV VPV EGCTDP+A NFDPTARSD+GSC Y+
Sbjct: 439 GQAAQQVKVPVAEGCTDPNAANFDPTARSDDGSCTYK 475
>ref|NP_001240152.1| ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Glycine max]
gi|290766479|gb|ADD60242.1| alpha-form rubisco activase
[Glycine max] gi|290766489|gb|ADD60247.1| alpha-form
rubisco activase [Glycine max]
Length = 478
Score = 731 bits (1888), Expect(2) = 0.0
Identities = 359/441 (81%), Positives = 396/441 (89%), Gaps = 3/441 (0%)
Frame = -1
Query: 1660 MAAPFSTLGAVNSALVNLPSSNTGASLPTSSFFGTNLKKAISSGYTNQKVSSRSFKVVXX 1481
MAA ST+GAVN A ++L SS GAS+P+S+FFGT+LKK I+S N K+SS SFK+V
Sbjct: 1 MAASVSTVGAVNGAPLSLNSSGAGASVPSSAFFGTSLKKVIASRVPNVKISSGSFKIVAA 60
Query: 1480 XXXXXXKGQ---DRWKGLGTDISDDQQDITRGKGLVDSLFQAPSGAGTHDAIMSSYDYIS 1310
K Q DRWKGL D+SDDQQDITRGKGLVDSLFQAP GTH AIMSSY+Y+S
Sbjct: 61 EKEIDEKQQTDKDRWKGLAYDVSDDQQDITRGKGLVDSLFQAPQDTGTHYAIMSSYEYLS 120
Query: 1309 QGLREYNFDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCE 1130
GL++YN DNNMDGFYIAPAFMDKLVVHI+KNFMTLPNIKVPLILGIWGGKGQGKSFQCE
Sbjct: 121 TGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCE 180
Query: 1129 LVFAKMGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGR 950
LVFAKMG+NPIMMSAGELESGNAGEPAKLIRQRYREAAD+I+KGKMC LFINDLDAGAGR
Sbjct: 181 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCALFINDLDAGAGR 240
Query: 949 MGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 770
+GGTTQYTVNNQMVNATLMNIADNPT+VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR
Sbjct: 241 LGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 300
Query: 769 DGRMEKFYWAPTRDDRIGVCTGIFKTDNIAPEDVIKIVDTFPGQSIDFFGALRARVYDDE 590
DGRMEKFYWAPTRDDR+GVC GIF+TDN+ +D++K+VDTFPGQSIDFFGALRARVYDDE
Sbjct: 301 DGRMEKFYWAPTRDDRVGVCNGIFRTDNVPKDDIVKLVDTFPGQSIDFFGALRARVYDDE 360
Query: 589 VRKWISGVGVDGIGKKLVNSKDGPPTFEQPKMTVEKLLEYGYMIVQEQDNVKRVQLADKY 410
VRKWIS VGVD IGKKLVNSK+GPPTF+QPKMT+ KLLEYG M+VQEQ+NVKRVQLADKY
Sbjct: 361 VRKWISVVGVDFIGKKLVNSKEGPPTFDQPKMTLSKLLEYGNMLVQEQENVKRVQLADKY 420
Query: 409 LNEASLGEANADAINSGNFFG 347
L EA+LG+AN D+IN G F+G
Sbjct: 421 LKEAALGDANQDSINRGTFYG 441
Score = 73.9 bits (180), Expect(2) = 0.0
Identities = 31/36 (86%), Positives = 35/36 (97%)
Frame = -2
Query: 315 GKAAQQVNVPVPEGCTDPSAQNFDPTARSDNGSCLY 208
GKAAQQVN+PVPEGCTDP+A NFDPTARSD+G+CLY
Sbjct: 441 GKAAQQVNIPVPEGCTDPNASNFDPTARSDDGTCLY 476
>gb|ABK95600.1| unknown [Populus trichocarpa]
Length = 476
Score = 733 bits (1893), Expect(2) = 0.0
Identities = 355/439 (80%), Positives = 396/439 (90%), Gaps = 1/439 (0%)
Frame = -1
Query: 1660 MAAPFSTLGAVNSALVNLPSSNTGASLPTSSFFGTNLKKAISSGYTNQKVSSRSFKVVXX 1481
MAA ST+GAVN+A + L S G+++P S+FFG +LKK SS +TN K+S SFKVV
Sbjct: 1 MAATISTVGAVNTAPLALNGSGAGSTVPNSAFFGNSLKKVSSSRFTNSKISPGSFKVVAE 60
Query: 1480 XXXXXXKGQDRWKGLGTDISDDQQDITRGKGLVDSLFQAPSGAGTHDAIMSSYDYISQGL 1301
+DRW GL TD+SDDQQDI+RGKG+VDSLFQAP G GTH+ +++SY+Y+SQGL
Sbjct: 61 YDEKKQTDKDRWGGLVTDMSDDQQDISRGKGMVDSLFQAPQGTGTHNPVLNSYEYLSQGL 120
Query: 1300 REYNFDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 1121
R YN DNNMDGFYIAPAFMDKLVVHI+KNFM+LPNIKVPLILG+WGGKGQGKSFQCELVF
Sbjct: 121 RTYNLDNNMDGFYIAPAFMDKLVVHISKNFMSLPNIKVPLILGVWGGKGQGKSFQCELVF 180
Query: 1120 AKMGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIRK-GKMCCLFINDLDAGAGRMG 944
AKMG+NPIMMSAGELESGNAGEPAKLIRQRYREAADII+K GKMCCLFINDLDAGAGR+G
Sbjct: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRLG 240
Query: 943 GTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 764
GTTQYTVNNQMVNATLMNIADNPT+VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG
Sbjct: 241 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 300
Query: 763 RMEKFYWAPTRDDRIGVCTGIFKTDNIAPEDVIKIVDTFPGQSIDFFGALRARVYDDEVR 584
RMEKFYWAPTRDDRIGVC GIFK+D I ED++K+VDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 301 RMEKFYWAPTRDDRIGVCIGIFKSDKIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 360
Query: 583 KWISGVGVDGIGKKLVNSKDGPPTFEQPKMTVEKLLEYGYMIVQEQDNVKRVQLADKYLN 404
KW+SGVGVD IGKKLVNS++GPPTFEQPKMT+EKLLEYG M+VQEQ+NVKRVQLADKYL+
Sbjct: 361 KWVSGVGVDSIGKKLVNSREGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLS 420
Query: 403 EASLGEANADAINSGNFFG 347
EASLGEAN D+I+ G F+G
Sbjct: 421 EASLGEANQDSIDRGTFYG 439
Score = 66.6 bits (161), Expect(2) = 0.0
Identities = 29/37 (78%), Positives = 33/37 (89%)
Frame = -2
Query: 315 GKAAQQVNVPVPEGCTDPSAQNFDPTARSDNGSCLYE 205
G+AAQQV VPV EGCTDP+A NFDPTARSD+GSC Y+
Sbjct: 439 GQAAQQVKVPVAEGCTDPNAANFDPTARSDDGSCTYK 475