BLASTX nr result

ID: Coptis25_contig00001079 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00001079
         (328 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002319951.1| predicted protein [Populus trichocarpa] gi|2...    42   6e-07
ref|XP_002276175.1| PREDICTED: fasciclin-like arabinogalactan pr...    43   1e-06

>ref|XP_002319951.1| predicted protein [Populus trichocarpa] gi|222858327|gb|EEE95874.1|
           predicted protein [Populus trichocarpa]
          Length = 353

 Score = 42.0 bits (97), Expect(2) = 6e-07
 Identities = 17/26 (65%), Positives = 23/26 (88%)
 Frame = +1

Query: 178 LGINGVQITAPDILSSKEFVIHGISR 255
           L INGV+I AP+I SSKEF++HGI++
Sbjct: 316 LAINGVEIAAPEIFSSKEFIVHGITQ 341



 Score = 36.2 bits (82), Expect(2) = 6e-07
 Identities = 16/27 (59%), Positives = 22/27 (81%)
 Frame = +2

Query: 62  SHSPMLERLVRLYILPERYEYRELVSM 142
           S SPMLE++VRL+ILP+R  Y EL ++
Sbjct: 263 SSSPMLEKIVRLHILPQRATYIELAAL 289


>ref|XP_002276175.1| PREDICTED: fasciclin-like arabinogalactan protein 21-like [Vitis
           vinifera]
          Length = 354

 Score = 42.7 bits (99), Expect(2) = 1e-06
 Identities = 20/31 (64%), Positives = 24/31 (77%)
 Frame = +1

Query: 163 NAKGVLGINGVQITAPDILSSKEFVIHGISR 255
           N+  VL INGV I APD+ SSK+F+IH ISR
Sbjct: 313 NSSQVLVINGVDIVAPDVFSSKKFIIHVISR 343



 Score = 34.3 bits (77), Expect(2) = 1e-06
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +2

Query: 62  SHSPMLERLVRLYILPERYEYRELVSM 142
           S SP+L+R+VR +ILP R  Y EL S+
Sbjct: 264 SPSPLLDRIVRFHILPRRLSYIELASL 290


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