BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00001060
         (1336 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277791.1| PREDICTED: 40S ribosomal protein S3a-1 [Viti...   363   7e-98
gb|AFS65104.1| 40S ribosomal protein S3a-like protein [Elaeis gu...   360   3e-97
gb|ABK56834.1| RPS3 [Cymbidium hybrid cultivar]                       359   1e-96
gb|AFK33413.1| unknown [Lotus japonicus]                              358   1e-96
ref|NP_001239858.1| uncharacterized protein LOC100808747 [Glycin...   358   2e-96

>ref|XP_002277791.1| PREDICTED: 40S ribosomal protein S3a-1 [Vitis vinifera]
          Length = 261

 Score =  363 bits (931), Expect = 7e-98
 Identities = 188/243 (77%), Positives = 196/243 (80%)
 Frame = +2

Query: 122 DPFAKKDWYDIKAPSLFSTRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQNDEDQSY 301
           DPFAKKDWYDIKAPS+FS RNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQNDED +Y
Sbjct: 22  DPFAKKDWYDIKAPSIFSVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQNDEDHAY 81

Query: 302 RKIRLRVEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTXXXXXXX 481
           RKIRLR EDVQG+NVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYT       
Sbjct: 82  RKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYT------- 134

Query: 482 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQIRRKMMEIMVNQAQSCDLKELVQKF 661
                                            RQIRRKM EIM  QA SCDLKELV+KF
Sbjct: 135 ------LRMFCIAFTKKRQNQNKKTSYAQSSQIRQIRRKMREIMTTQAASCDLKELVRKF 188

Query: 662 IPEMIGKEIEKATSSIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVERPAE 841
           IPEMIG+EIEKATSSIYPLQNVF+RKVKILKAPKFDLGKLMEVHGDYSEDVGVK+ERPAE
Sbjct: 189 IPEMIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPAE 248

Query: 842 ETM 850
           ET+
Sbjct: 249 ETV 251


>gb|AFS65104.1| 40S ribosomal protein S3a-like protein [Elaeis guineensis]
          Length = 261

 Score =  360 bits (925), Expect = 3e-97
 Identities = 184/242 (76%), Positives = 197/242 (81%)
 Frame = +2

Query: 119 VDPFAKKDWYDIKAPSLFSTRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQNDEDQS 298
           VDPFAKKDWYDIKAPS+F+ RN+GKTLVSRTQGTKIASEGLKHRVFEISLADLQNDEDQ+
Sbjct: 21  VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEISLADLQNDEDQA 80

Query: 299 YRKIRLRVEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTXXXXXX 478
           YRKIRLR EDVQG+NVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYT      
Sbjct: 81  YRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYT------ 134

Query: 479 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQIRRKMMEIMVNQAQSCDLKELVQK 658
                                             RQIRRKM EIMVNQA SCDLK+LVQK
Sbjct: 135 -------LRMFCIGFTKRRPNQVKRTCYAQTSQIRQIRRKMREIMVNQAASCDLKDLVQK 187

Query: 659 FIPEMIGKEIEKATSSIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVERPA 838
           FIPE+IGKEIEKAT+SIYPLQNVF+RKVKILKAPKFDLGKLMEVHGDY EDVGVK++RPA
Sbjct: 188 FIPEVIGKEIEKATTSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYKEDVGVKIDRPA 247

Query: 839 EE 844
           ++
Sbjct: 248 DD 249


>gb|ABK56834.1| RPS3 [Cymbidium hybrid cultivar]
          Length = 261

 Score =  359 bits (921), Expect = 1e-96
 Identities = 183/243 (75%), Positives = 195/243 (80%)
 Frame = +2

Query: 116 TVDPFAKKDWYDIKAPSLFSTRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQNDEDQ 295
           TVDPF+KKDWYDIKAPS+F+ RN+GKTLVSRTQGTKIASEGLKHRVFEISLADLQNDEDQ
Sbjct: 20  TVDPFSKKDWYDIKAPSVFTVRNIGKTLVSRTQGTKIASEGLKHRVFEISLADLQNDEDQ 79

Query: 296 SYRKIRLRVEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTXXXXX 475
           SYRKIRLR EDVQG+NVLTNFWGMDFTTDKLRSLVRKWQTLIEAH+DVKTTDNYT     
Sbjct: 80  SYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHIDVKTTDNYT----- 134

Query: 476 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQIRRKMMEIMVNQAQSCDLKELVQ 655
                                              RQIRRKM EIM NQA SCDLKELVQ
Sbjct: 135 --------LRLFCIGFTKRRPNQVKRTCYAQTSQIRQIRRKMREIMTNQASSCDLKELVQ 186

Query: 656 KFIPEMIGKEIEKATSSIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVERP 835
           KFIPE+IGKEIEKAT+SIYPLQNVF+RKVKILKAPKFDLGKLMEVHGDY ED GVK++RP
Sbjct: 187 KFIPEVIGKEIEKATTSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYKEDFGVKLDRP 246

Query: 836 AEE 844
            E+
Sbjct: 247 GED 249


>gb|AFK33413.1| unknown [Lotus japonicus]
          Length = 261

 Score =  358 bits (920), Expect = 1e-96
 Identities = 184/243 (75%), Positives = 195/243 (80%)
 Frame = +2

Query: 122 DPFAKKDWYDIKAPSLFSTRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQNDEDQSY 301
           DPFAKKDWYDIKAPSLF  +NVGKTLVSRTQGTKIASEGLKHRVFE+SLADLQ DED ++
Sbjct: 22  DPFAKKDWYDIKAPSLFQVKNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDNAF 81

Query: 302 RKIRLRVEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTXXXXXXX 481
           RKIRLR EDVQG+NVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYT       
Sbjct: 82  RKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYT------- 134

Query: 482 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQIRRKMMEIMVNQAQSCDLKELVQKF 661
                                            RQIRRKM EIM+NQA SCDLKELV+KF
Sbjct: 135 ------LRMFCIAFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCDLKELVRKF 188

Query: 662 IPEMIGKEIEKATSSIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVERPAE 841
           IPEMIGKEIEKATSSIYPLQNVF+RKVKILKAPKFDLGKLMEVHGDYSEDVG KV+RPA+
Sbjct: 189 IPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVDRPAD 248

Query: 842 ETM 850
           ET+
Sbjct: 249 ETV 251


>ref|NP_001239858.1| uncharacterized protein LOC100808747 [Glycine max]
           gi|255646807|gb|ACU23875.1| unknown [Glycine max]
          Length = 261

 Score =  358 bits (918), Expect = 2e-96
 Identities = 183/243 (75%), Positives = 195/243 (80%)
 Frame = +2

Query: 122 DPFAKKDWYDIKAPSLFSTRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQNDEDQSY 301
           DPFAKKDWYDIKAPSLF  +N+GKTLVSRTQGTKIASEGLKHRVFE+SLADLQ DED S+
Sbjct: 22  DPFAKKDWYDIKAPSLFQVKNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDHSF 81

Query: 302 RKIRLRVEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTXXXXXXX 481
           +KIRLR EDVQG+NVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYT       
Sbjct: 82  KKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYT------- 134

Query: 482 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQIRRKMMEIMVNQAQSCDLKELVQKF 661
                                            RQIRRKM EIMVNQA +CDLKELV+KF
Sbjct: 135 ------LRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMVNQATACDLKELVRKF 188

Query: 662 IPEMIGKEIEKATSSIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVERPAE 841
           IPEMIGKEIEKATSSIYPLQNVF+RKVKILKAPKFDLGKLMEVHGDYSEDVG KV+RPA+
Sbjct: 189 IPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGAKVDRPAD 248

Query: 842 ETM 850
           ET+
Sbjct: 249 ETL 251