BLASTX nr result
ID: Coptis25_contig00001029
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00001029
(1255 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK54292.1|AC034258_10 putative helicase [Oryza sativa Japoni... 350 3e-94
gb|ABB47755.2| expressed protein [Oryza sativa Japonica Group] 350 3e-94
gb|ABA94634.1| AT hook motif-containing protein, putative [Oryza... 349 7e-94
ref|XP_003612653.1| ATP-dependent DNA helicase PIF1 [Medicago tr... 348 1e-93
gb|ABA94947.1| AT hook motif-containing protein, putative [Oryza... 348 2e-93
>gb|AAK54292.1|AC034258_10 putative helicase [Oryza sativa Japonica Group]
Length = 1501
Score = 350 bits (899), Expect = 3e-94
Identities = 183/413 (44%), Positives = 262/413 (63%), Gaps = 2/413 (0%)
Frame = -1
Query: 1234 RISTSKSRTATRRQEDIRKHRNIDKELNTHIDSRGVHNFGPPTRECSYCGAIVWEGERNN 1055
R+ + T R ++ R ++N+ + DS+ + NFG PT C +C A++W ER+
Sbjct: 119 RMKRKEQNTLKRSRKGTRTNKNVITKEIISSDSK-IWNFGGPTCMCQHCHALMWHAERSL 177
Query: 1054 KGKSAFPTFSICCQNGKVQLPLLETMPTFLR*LMDLQGGRRSSHFRRCIRTYNCMFQFTS 875
P+F +CC+ GKV LP L+ P +L L+ GGR S+++++ IR+YN MF FTS
Sbjct: 178 HSTVKQPSFGLCCKQGKVALPPLKEQPPYLTSLLTRDGGR-STNYQQNIRSYNSMFAFTS 236
Query: 874 AGGEIDKTLNNGGGPYAFRISGQNHHKIGSLLPIENHPPKFAQLYIYDTENERCNRMKAI 695
GG +D+ +NNG GPY FR++GQNHH IG+LLP ++ P+F QLY+YDTENE NR++A
Sbjct: 237 MGGTVDRKINNGHGPYIFRLNGQNHHHIGTLLPEGSNKPRFQQLYVYDTENEIENRIEAS 296
Query: 694 PPDEESA--DPTIVDELIQMFDKYNKVVQSFRMARDRFKEDDMVPVRLRLINNRQSDGRQ 521
+A D + L++M D+ N + Q+FRMARDRFKEDD LRL++NR DGRQ
Sbjct: 297 KSGASNAPLDQKTIASLLKMLDENNTLAQTFRMARDRFKEDDYHNYTLRLLDNRDQDGRQ 356
Query: 520 YNLPTSTEVAALIMGDGFDITDYRDIIVETQGGGLERINELHPKFMALQYPILFPRGEDG 341
N+P+++EVA LI+ D + RDI++E + +RI+E HPK MA+QYP+LFP GEDG
Sbjct: 357 DNMPSASEVALLIVKDPTKKSYGRDIVLEYKDMRPKRISETHPKLMAMQYPLLFPYGEDG 416
Query: 340 YRPGILYRGKSQSETEGNTRNTDTKTRNMVTMREYYAFRLQKRIKEGPTLWIGGRLRLSF 161
YRPGI Y GK RN + VTM EYYA+RLQ+R + + G L + +
Sbjct: 417 YRPGIKYSGKE------GVRN----DKKCVTMLEYYAYRLQQRQDQSMLPLMCGNLSMQY 466
Query: 160 IVDGYTSMEDQRLHWYRMNQATIRSELYSNLMDAVTAGDTSAASIGKRLILPS 2
+VD + +E RL+W R NQ +R+ELY L DA+ GDT +G+R++LP+
Sbjct: 467 MVDAHACIEQIRLNWIRQNQGVLRTELYGGLQDALRRGDTRTEQVGRRIVLPA 519
>gb|ABB47755.2| expressed protein [Oryza sativa Japonica Group]
Length = 1517
Score = 350 bits (899), Expect = 3e-94
Identities = 183/413 (44%), Positives = 262/413 (63%), Gaps = 2/413 (0%)
Frame = -1
Query: 1234 RISTSKSRTATRRQEDIRKHRNIDKELNTHIDSRGVHNFGPPTRECSYCGAIVWEGERNN 1055
R+ + T R ++ R ++N+ + DS+ + NFG PT C +C A++W ER+
Sbjct: 119 RMKRKEQNTLKRSRKGTRTNKNVITKEIISSDSK-IWNFGGPTCMCQHCHALMWHAERSL 177
Query: 1054 KGKSAFPTFSICCQNGKVQLPLLETMPTFLR*LMDLQGGRRSSHFRRCIRTYNCMFQFTS 875
P+F +CC+ GKV LP L+ P +L L+ GGR S+++++ IR+YN MF FTS
Sbjct: 178 HSTVKQPSFGLCCKQGKVALPPLKEQPPYLTSLLTRDGGR-STNYQQNIRSYNSMFAFTS 236
Query: 874 AGGEIDKTLNNGGGPYAFRISGQNHHKIGSLLPIENHPPKFAQLYIYDTENERCNRMKAI 695
GG +D+ +NNG GPY FR++GQNHH IG+LLP ++ P+F QLY+YDTENE NR++A
Sbjct: 237 MGGTVDRKINNGHGPYIFRLNGQNHHHIGTLLPEGSNKPRFQQLYVYDTENEIENRIEAS 296
Query: 694 PPDEESA--DPTIVDELIQMFDKYNKVVQSFRMARDRFKEDDMVPVRLRLINNRQSDGRQ 521
+A D + L++M D+ N + Q+FRMARDRFKEDD LRL++NR DGRQ
Sbjct: 297 KSGASNAPLDQKTIASLLKMLDENNTLAQTFRMARDRFKEDDYHNYTLRLLDNRDQDGRQ 356
Query: 520 YNLPTSTEVAALIMGDGFDITDYRDIIVETQGGGLERINELHPKFMALQYPILFPRGEDG 341
N+P+++EVA LI+ D + RDI++E + +RI+E HPK MA+QYP+LFP GEDG
Sbjct: 357 DNMPSASEVALLIVKDPTKKSYGRDIVLEYKDMRPKRISETHPKLMAMQYPLLFPYGEDG 416
Query: 340 YRPGILYRGKSQSETEGNTRNTDTKTRNMVTMREYYAFRLQKRIKEGPTLWIGGRLRLSF 161
YRPGI Y GK RN + VTM EYYA+RLQ+R + + G L + +
Sbjct: 417 YRPGIKYSGKE------GVRN----DKKCVTMLEYYAYRLQQRQDQSMLPLMCGNLSMQY 466
Query: 160 IVDGYTSMEDQRLHWYRMNQATIRSELYSNLMDAVTAGDTSAASIGKRLILPS 2
+VD + +E RL+W R NQ +R+ELY L DA+ GDT +G+R++LP+
Sbjct: 467 MVDAHACIEQIRLNWIRQNQGVLRTELYGGLQDALRRGDTRTEQVGRRIVLPA 519
>gb|ABA94634.1| AT hook motif-containing protein, putative [Oryza sativa Japonica
Group]
Length = 1618
Score = 349 bits (896), Expect = 7e-94
Identities = 188/377 (49%), Positives = 245/377 (64%), Gaps = 3/377 (0%)
Frame = -1
Query: 1123 NFGPPTRECSYCGAIVWEGERNN-KGKSAFPTFSICCQNGKVQLPLLETMPTFLR*LMDL 947
NFG PT C +CGA+ W ER KGK P+FS+CC+ GKV LP L+ PT+L LM
Sbjct: 284 NFGKPTCTCQHCGALFWYEERTRGKGKGP-PSFSLCCKQGKVDLPTLKKPPTYLSNLMCK 342
Query: 946 QGGRRSSHFRRCIRTYNCMFQFTSAGGEIDKTLNNGGGPYAFRISGQNHHKIGSLLPIEN 767
+ G+RS ++ IR YN MF FTS GG++D+ +NNG GPY FR++GQN+H+IG+LLP E
Sbjct: 343 EKGKRSRNYMDNIRVYNSMFAFTSMGGKVDREINNGSGPYVFRMNGQNYHRIGTLLPEEG 402
Query: 766 HPPKFAQLYIYDTENERCNRMKAIPP--DEESADPTIVDELIQMFDKYNKVVQSFRMARD 593
P++AQLYIYDTENE NR+ A + ES D IV L M D+ N + Q+FRMARD
Sbjct: 403 DKPRWAQLYIYDTENEVKNRIDASTSSHNRESIDSHIVLGLKNMLDRENVLAQTFRMARD 462
Query: 592 RFKEDDMVPVRLRLINNRQSDGRQYNLPTSTEVAALIMGDGFDITDYRDIIVETQGGGLE 413
RFKE D V LRLI R DGRQ+N+P+++EVAALI+ D + RDIIV + G
Sbjct: 463 RFKEGDYHNVSLRLIRKRGGDGRQHNMPSASEVAALIVNDTSENQKGRDIIVHYKDTGPR 522
Query: 412 RINELHPKFMALQYPILFPRGEDGYRPGILYRGKSQSETEGNTRNTDTKTRNMVTMREYY 233
RI+E HPKFMA+QYP+LFP GEDG+ ILYR S+ + R +TM EYY
Sbjct: 523 RISENHPKFMAMQYPLLFPYGEDGFTNKILYRDNHGSKCK----------RKHLTMLEYY 572
Query: 232 AFRLQKRIKEGPTLWIGGRLRLSFIVDGYTSMEDQRLHWYRMNQATIRSELYSNLMDAVT 53
A+R+Q+R + L + +L L FIVD + RL W R +Q +R+ELY+ L DA+
Sbjct: 573 AYRIQQRKNQCMHLLMCEKLTLQFIVDALACIIQYRLDWIRKHQGNLRTELYAGLQDAIE 632
Query: 52 AGDTSAASIGKRLILPS 2
GDT A +GKR++LPS
Sbjct: 633 RGDTRAEQVGKRILLPS 649
>ref|XP_003612653.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
gi|355513988|gb|AES95611.1| ATP-dependent DNA helicase
PIF1 [Medicago truncatula]
Length = 1427
Score = 348 bits (894), Expect = 1e-93
Identities = 179/377 (47%), Positives = 240/377 (63%), Gaps = 3/377 (0%)
Frame = -1
Query: 1123 NFGPPTRECSYCGAIVWEGERNNKGKSAF-PTFSICCQNGKVQLPLLETMPTFLR*LMDL 947
+ G P EC CG+ +W ER +K + PTFS+CC G V L LE P +L+ L+
Sbjct: 2 DLGHPNFECEKCGSTMWYNERADKPRRPRNPTFSLCCLKGDVSLEFLEQPPDYLKELLAY 61
Query: 946 QGGRRSSHFRRCIRTYNCMFQFTSAGGEIDKTLNNGGGPYAFRISGQNHHKIGSLLPIEN 767
+GGR S FR IR YN +F FTS G +ID T+N GPY ++ISGQN+H+IG L+P +
Sbjct: 62 KGGRHSVKFREKIRAYNSIFAFTSMGDKIDNTVNLRPGPYVYKISGQNYHRIGGLIPGQG 121
Query: 766 HPPKFAQLYIYDTENERCNRMKAIPPDE--ESADPTIVDELIQMFDKYNKVVQSFRMARD 593
PKF+QLY++DTENE NR+ ++ + D IV L M D N V + FRMARD
Sbjct: 122 KQPKFSQLYVHDTENEIQNRLSSLNGGKTARDLDADIVRRLKDMLDMNNSVAKLFRMARD 181
Query: 592 RFKEDDMVPVRLRLINNRQSDGRQYNLPTSTEVAALIMGDGFDITDYRDIIVETQGGGLE 413
R D VR+RLI R +D RQY PT+TE+A LI+GD + RDI++E + GL+
Sbjct: 182 RLSAPDNKEVRIRLIGTRSNDSRQYTAPTATEIAGLIVGDFGESNGRRDIVIEHKTDGLQ 241
Query: 412 RINELHPKFMALQYPILFPRGEDGYRPGILYRGKSQSETEGNTRNTDTKTRNMVTMREYY 233
RI E HPKFMA+QYP+LFP EDG+ I Y ++ + + K R VTMREYY
Sbjct: 242 RIKEYHPKFMAMQYPLLFPYAEDGFHLDIYY-------SQNHAKRKKKKKRKKVTMREYY 294
Query: 232 AFRLQKRIKEGPTLWIGGRLRLSFIVDGYTSMEDQRLHWYRMNQATIRSELYSNLMDAVT 53
A+R+Q+R E TL IGGRL ++VD +T++E++RL W R NQ +R++LY N+ DAV
Sbjct: 295 AYRIQQRPCEANTLIIGGRLFQQYVVDAFTAIEEERLRWVRQNQTVLRTDLYRNVCDAVV 354
Query: 52 AGDTSAASIGKRLILPS 2
GDT AA+ GKR++LPS
Sbjct: 355 RGDTIAAATGKRIVLPS 371
>gb|ABA94947.1| AT hook motif-containing protein, putative [Oryza sativa Japonica
Group]
Length = 1682
Score = 348 bits (892), Expect = 2e-93
Identities = 187/377 (49%), Positives = 245/377 (64%), Gaps = 3/377 (0%)
Frame = -1
Query: 1123 NFGPPTRECSYCGAIVWEGERNN-KGKSAFPTFSICCQNGKVQLPLLETMPTFLR*LMDL 947
NFG PT C +CGA+ W ER KGK P+FS+CC+ GKV LP L+ PT+L LM
Sbjct: 284 NFGKPTCTCQHCGALFWYEERTRGKGKGP-PSFSLCCKQGKVDLPTLKKPPTYLSNLMCK 342
Query: 946 QGGRRSSHFRRCIRTYNCMFQFTSAGGEIDKTLNNGGGPYAFRISGQNHHKIGSLLPIEN 767
+ G+RS ++ IR YN MF FTS GG++D+ +NNG GPY FR++GQN+H+IG+LLP E
Sbjct: 343 EKGKRSRNYMDNIRVYNSMFAFTSMGGKVDREINNGSGPYVFRMNGQNYHRIGTLLPEEG 402
Query: 766 HPPKFAQLYIYDTENERCNRMKAIPP--DEESADPTIVDELIQMFDKYNKVVQSFRMARD 593
P++AQLYIYDTENE NR+ A + ES D IV L M D+ N + Q+FR+ARD
Sbjct: 403 DKPRWAQLYIYDTENEVKNRIDASTSSHNRESIDSHIVLGLKNMLDRENVLAQTFRIARD 462
Query: 592 RFKEDDMVPVRLRLINNRQSDGRQYNLPTSTEVAALIMGDGFDITDYRDIIVETQGGGLE 413
RFKE D V LRLI R DGRQ+N+P+++EVAALI+ D + RDIIV + G
Sbjct: 463 RFKEGDYHNVSLRLIRKRGGDGRQHNMPSASEVAALIVNDTSENQKGRDIIVHYKDTGPR 522
Query: 412 RINELHPKFMALQYPILFPRGEDGYRPGILYRGKSQSETEGNTRNTDTKTRNMVTMREYY 233
RI+E HPKFMA+QYP+LFP GEDG+ ILYR S+ + R +TM EYY
Sbjct: 523 RISENHPKFMAMQYPLLFPYGEDGFTNKILYRDNHGSKCK----------RKHLTMLEYY 572
Query: 232 AFRLQKRIKEGPTLWIGGRLRLSFIVDGYTSMEDQRLHWYRMNQATIRSELYSNLMDAVT 53
A+R+Q+R + L + +L L FIVD + RL W R +Q +R+ELY+ L DA+
Sbjct: 573 AYRIQQRKNQCMHLLMCEKLTLQFIVDALACIIQYRLDWIRKHQGNLRTELYAGLQDAIE 632
Query: 52 AGDTSAASIGKRLILPS 2
GDT A +GKR++LPS
Sbjct: 633 RGDTRAEQVGKRILLPS 649