BLASTX nr result
ID: Coptis25_contig00001022
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00001022
(2218 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN62354.1|AF506028_23 CTV.22 [Citrus trifoliata] 437 e-120
ref|XP_002530460.1| transcription cofactor, putative [Ricinus co... 434 e-119
ref|XP_002327402.1| predicted protein [Populus trichocarpa] gi|2... 409 e-111
ref|XP_002271720.2| PREDICTED: uncharacterized protein LOC100264... 405 e-110
ref|XP_002298206.1| predicted protein [Populus trichocarpa] gi|2... 405 e-110
>gb|AAN62354.1|AF506028_23 CTV.22 [Citrus trifoliata]
Length = 1405
Score = 437 bits (1124), Expect = e-120
Identities = 240/378 (63%), Positives = 273/378 (72%), Gaps = 14/378 (3%)
Frame = +1
Query: 355 LQQMSE--DMKMRQVMGFKQGMAPQHHSAGQRTPYHHPQLKPGAQFPXXXXXXXXXXXXX 528
L QM++ D+K+RQ M K G+ QH ++GQR+ Y H LKPGAQFP
Sbjct: 938 LNQMNDVNDLKIRQGMAVKPGVFQQHLTSGQRSAYSHQPLKPGAQFPISSPQLLQTASPQ 997
Query: 529 XXXXXXXXXXXXXXXXXXQNLLTTFPKSGTPLQSANSPFIVPSPSTPLAPSPIPGDTEKQ 708
QNLL + KSGTPLQS NSPF+VPSPSTP+APSP+PGD+EK
Sbjct: 998 IPQHSSPQVDQ-------QNLLQSITKSGTPLQSVNSPFVVPSPSTPMAPSPMPGDSEKP 1050
Query: 709 ASGISSLSNTGHVGXXXXXXXXXXXXXXXIGTPGISASPLLAEFTTTDANQG-------- 864
SGISSLSN G++G IGTPGISASPLLAEFT D G
Sbjct: 1051 ISGISSLSNAGNIGHQQTTSAQAAAPSLAIGTPGISASPLLAEFTGPDGAHGNALTAISI 1110
Query: 865 ----TEQPLERLLKAVKAISPKAFSASVSDIGSVISMIDRIAGSAPGNGSRAAVGEDLVA 1032
TEQPLERL+KAVK++SPKA SASVSDIGSV+SMIDRIAGSAPGNGSRAAVGEDLVA
Sbjct: 1111 KASVTEQPLERLIKAVKSMSPKALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVA 1170
Query: 1033 MTKCRMQARNFISQDGVSATKKMRRDTSAMPLNAVSSAGSVNDSLKQSNVLEMSELESTA 1212
MTKCR+QARNFI+QDG S +KMRR TSAMPL+ VSSAGS+NDS KQ E S+LESTA
Sbjct: 1171 MTKCRLQARNFITQDGSSGPRKMRRYTSAMPLSVVSSAGSMNDSFKQLTGSETSDLESTA 1230
Query: 1213 TSRIKRPRVEANHALLEEIKEINQRLIDTVVDISDEDVDPTVXXXXXEGGQGIIVKCSFN 1392
TS IKRPR+EANHALLEEI+EINQRLIDTVVDISDED DPT EGG+G +VKCSF+
Sbjct: 1231 TSSIKRPRMEANHALLEEIREINQRLIDTVVDISDEDADPTAAGSAGEGGEGTVVKCSFS 1290
Query: 1393 AVSLSPNLKTQYASAQMT 1446
AV+LSPNLK+QYASAQM+
Sbjct: 1291 AVALSPNLKSQYASAQMS 1308
Score = 73.9 bits (180), Expect(2) = 2e-11
Identities = 35/61 (57%), Positives = 42/61 (68%)
Frame = +3
Query: 1593 IDLSKENEDLSVKTXXXXXXXXXXXXQPMSLKEMVRTWDICARAAISDYAQQHGGGSFSS 1772
+++SKE EDLSVK QPMSL E+ RTWD+CAR IS+YAQQ GGGSFSS
Sbjct: 1334 VEISKEYEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARTVISEYAQQSGGGSFSS 1393
Query: 1773 R 1775
+
Sbjct: 1394 K 1394
Score = 23.5 bits (49), Expect(2) = 2e-11
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2
Query: 1841 GTWEKCVSAA 1870
GTWE C+SAA
Sbjct: 1396 GTWENCLSAA 1405
>ref|XP_002530460.1| transcription cofactor, putative [Ricinus communis]
gi|223530005|gb|EEF31930.1| transcription cofactor,
putative [Ricinus communis]
Length = 1382
Score = 434 bits (1116), Expect = e-119
Identities = 238/378 (62%), Positives = 274/378 (72%), Gaps = 14/378 (3%)
Frame = +1
Query: 355 LQQMSE--DMKMRQVMGFKQGMAPQHHSAGQRTPYHHPQLKPGAQFPXXXXXXXXXXXXX 528
+ QM++ D+K+R MG K G+ QH SAGQRT Y H Q+KPGA FP
Sbjct: 915 VHQMNDVNDLKIRPGMGVKPGVFQQHLSAGQRTTYPHQQMKPGASFPISSPQLLQAASPQ 974
Query: 529 XXXXXXXXXXXXXXXXXXQNLLTTFPKSGTPLQSANSPFIVPSPSTPLAPSPIPGDTEKQ 708
QNLL++ K+GTPLQSANSPF+V SPSTPLAPSP+PGD+EK
Sbjct: 975 LTQHSSPQIDQ-------QNLLSSLTKTGTPLQSANSPFVVQSPSTPLAPSPMPGDSEKP 1027
Query: 709 ASGISSLSNTGHVGXXXXXXXXXXXXXXXIGTPGISASPLLAEFTTTDANQG-------- 864
+GISSLSN G++G IGTPGISASPLLAEFT +D
Sbjct: 1028 ITGISSLSNAGNIGQQQATVAQAPVPSLAIGTPGISASPLLAEFTGSDVGLANTLTTASG 1087
Query: 865 ----TEQPLERLLKAVKAISPKAFSASVSDIGSVISMIDRIAGSAPGNGSRAAVGEDLVA 1032
TEQPLERL+KAVK++SPKA SASVSDIGSV+SMIDRIA SAPGNGSRAAVGEDLVA
Sbjct: 1088 KSTVTEQPLERLIKAVKSMSPKALSASVSDIGSVVSMIDRIASSAPGNGSRAAVGEDLVA 1147
Query: 1033 MTKCRMQARNFISQDGVSATKKMRRDTSAMPLNAVSSAGSVNDSLKQSNVLEMSELESTA 1212
MT CR+QARNFI+QDG+S T+KMRR TSAMPLN VSSA S++DS KQ N E SELESTA
Sbjct: 1148 MTNCRLQARNFITQDGMSGTRKMRRYTSAMPLNVVSSASSISDSFKQFNGAETSELESTA 1207
Query: 1213 TSRIKRPRVEANHALLEEIKEINQRLIDTVVDISDEDVDPTVXXXXXEGGQGIIVKCSFN 1392
TS +KRPR+EANHALLEEI+EINQRLIDTVVDIS+EDVDPT GG+G IVKCSF+
Sbjct: 1208 TSSVKRPRLEANHALLEEIREINQRLIDTVVDISEEDVDPTAGAATAGGGEGTIVKCSFS 1267
Query: 1393 AVSLSPNLKTQYASAQMT 1446
AV+LSPNLK+QYASAQM+
Sbjct: 1268 AVALSPNLKSQYASAQMS 1285
Score = 73.2 bits (178), Expect(2) = 3e-11
Identities = 35/61 (57%), Positives = 43/61 (70%)
Frame = +3
Query: 1593 IDLSKENEDLSVKTXXXXXXXXXXXXQPMSLKEMVRTWDICARAAISDYAQQHGGGSFSS 1772
+++SKE EDLSVK QPMSL E+ RTWD+CARA IS++AQQ GGGSFSS
Sbjct: 1311 VEVSKEYEDLSVKAKSRFNISLRSLSQPMSLGEIARTWDVCARAVISEHAQQSGGGSFSS 1370
Query: 1773 R 1775
+
Sbjct: 1371 K 1371
Score = 23.5 bits (49), Expect(2) = 3e-11
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2
Query: 1841 GTWEKCVSAA 1870
GTWE C+SAA
Sbjct: 1373 GTWENCLSAA 1382
>ref|XP_002327402.1| predicted protein [Populus trichocarpa] gi|222835956|gb|EEE74377.1|
predicted protein [Populus trichocarpa]
Length = 1204
Score = 409 bits (1052), Expect = e-111
Identities = 226/375 (60%), Positives = 264/375 (70%), Gaps = 12/375 (3%)
Frame = +1
Query: 358 QQMSEDMKMRQVMGFKQGMAPQHHSAGQRTPYHHPQLKPGAQFPXXXXXXXXXXXXXXXX 537
QQM++ +MRQ +G K + QH QRT + +KP FP
Sbjct: 742 QQMNDVNEMRQGIGIKPAVFQQHLPTAQRTAFPRQHMKPAPSFPISSPQLPQHASPQLQH 801
Query: 538 XXXXXXXXXXXXXXXQNLLTTFPKSGTPLQSANSPFIVPSPSTPLAPSPIPGDTEKQASG 717
QNL ++ K+GTPLQSANSPF+VPSPSTPLAPSP+PGD++K SG
Sbjct: 802 SSPQIDQ--------QNLPSSVTKTGTPLQSANSPFVVPSPSTPLAPSPMPGDSDKPVSG 853
Query: 718 ISSLSNTGHVGXXXXXXXXXXXXXXXIGTPGISASPLLAEFTTTDANQG----------- 864
ISSL NTG++ IGTPGISASPLLAEFT+ D G
Sbjct: 854 ISSLLNTGNI-VHQPSVAQAPAPSLAIGTPGISASPLLAEFTSPDGAHGGALTTVSGKSN 912
Query: 865 -TEQPLERLLKAVKAISPKAFSASVSDIGSVISMIDRIAGSAPGNGSRAAVGEDLVAMTK 1041
TEQPLERL+KAVK++SPKA SASV DIGSV+SMIDRIAGSAPGNGSRAA GEDLVAMTK
Sbjct: 913 VTEQPLERLIKAVKSLSPKALSASVGDIGSVVSMIDRIAGSAPGNGSRAAAGEDLVAMTK 972
Query: 1042 CRMQARNFISQDGVSATKKMRRDTSAMPLNAVSSAGSVNDSLKQSNVLEMSELESTATSR 1221
CR+QARN+I+QDG++ ++KMRR TSAMPLN VSSAGSV+DS KQ E S+LESTATS
Sbjct: 973 CRLQARNYITQDGMTGSRKMRRHTSAMPLNVVSSAGSVSDSFKQFTGPETSDLESTATSS 1032
Query: 1222 IKRPRVEANHALLEEIKEINQRLIDTVVDISDEDVDPTVXXXXXEGGQGIIVKCSFNAVS 1401
+KRPR+EANHALLEEI+EINQRLIDTVVDISDEDVD T EGG+G IVKCSF+AV+
Sbjct: 1033 VKRPRIEANHALLEEIREINQRLIDTVVDISDEDVDSTAVAATAEGGEGTIVKCSFSAVA 1092
Query: 1402 LSPNLKTQYASAQMT 1446
LS NLK+QYASAQM+
Sbjct: 1093 LSQNLKSQYASAQMS 1107
Score = 70.1 bits (170), Expect(2) = 6e-10
Identities = 32/61 (52%), Positives = 42/61 (68%)
Frame = +3
Query: 1593 IDLSKENEDLSVKTXXXXXXXXXXXXQPMSLKEMVRTWDICARAAISDYAQQHGGGSFSS 1772
+++SKE EDLS+K QPMSL E+ RTWD+CAR IS++AQQ GGG+FSS
Sbjct: 1133 VEVSKEYEDLSIKAKSRFSISLRSLSQPMSLGEIARTWDVCARVVISEHAQQSGGGTFSS 1192
Query: 1773 R 1775
+
Sbjct: 1193 K 1193
Score = 21.9 bits (45), Expect(2) = 6e-10
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 1841 GTWEKCVSAA 1870
G+WE C+SAA
Sbjct: 1195 GSWENCLSAA 1204
>ref|XP_002271720.2| PREDICTED: uncharacterized protein LOC100264243 [Vitis vinifera]
Length = 1671
Score = 405 bits (1042), Expect = e-110
Identities = 230/372 (61%), Positives = 259/372 (69%), Gaps = 14/372 (3%)
Frame = +1
Query: 373 DMKMRQVMGF-KQGMAPQHHSAGQRTPYHHPQLKPGAQFPXXXXXXXXXXXXXXXXXXXX 549
D+KMRQ M K G+ QH A QR+ Y QLK G FP
Sbjct: 1211 DLKMRQGMSANKPGVFHQHQGAVQRSAYPQ-QLKSGTSFPISSPQLLQTASPQIPQHSSP 1269
Query: 550 XXXXXXXXXXXQNLLTTFPKSGTPLQSANSPFIVPSPSTPLAPSPIPGDTEKQASGISSL 729
QNLLT+ K+GTPLQSANSPF+VPSPSTPLAPSP+PG++EK SGIS +
Sbjct: 1270 QIDQ-------QNLLTSLTKAGTPLQSANSPFVVPSPSTPLAPSPMPGESEKLNSGISLI 1322
Query: 730 SNTGHVGXXXXXXXXXXXXXXXIGTPGISASPLLAEFTTTDANQG------------TEQ 873
+N G++G IGTPGISASPLLAEFT+ D N G TEQ
Sbjct: 1323 TNAGNIGHHQTTGALAPPPSLAIGTPGISASPLLAEFTSLDGNHGNASTMVSGKSSVTEQ 1382
Query: 874 PLERLLKAVKAISPKAFSASVSDIGSVISMIDRIAGSAPGNGSRAAVGEDLVAMTKCRMQ 1053
PLERL+K VK +SPKA SASVSDIGSV+SMIDRIAGSAPGNGSRAAVGEDLVAMTKCR+Q
Sbjct: 1383 PLERLIKVVKLMSPKALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQ 1442
Query: 1054 ARNFISQDGVSATKKMRRDTSAMPLNAVSSAGSVNDSLKQSNVLEMSELESTATSRIKRP 1233
ARNFI+ DG + T+KMRR TSAMPLN VSSAGSVNDS KQ E S+LESTATS KRP
Sbjct: 1443 ARNFITLDGAAGTRKMRRYTSAMPLNVVSSAGSVNDSFKQLAGSETSDLESTATSSAKRP 1502
Query: 1234 RVEANHALLEEIKEINQRLIDTVVDISDEDVDP-TVXXXXXEGGQGIIVKCSFNAVSLSP 1410
R+E NHALLEEI+EINQRLIDTVVDIS EDVDP EGG+G IVKCSF+AV+LSP
Sbjct: 1503 RIEVNHALLEEIREINQRLIDTVVDISHEDVDPAAAAAAAAEGGEGTIVKCSFSAVALSP 1562
Query: 1411 NLKTQYASAQMT 1446
NLK+QY S QM+
Sbjct: 1563 NLKSQYTSTQMS 1574
Score = 76.6 bits (187), Expect(2) = 9e-12
Identities = 37/61 (60%), Positives = 43/61 (70%)
Frame = +3
Query: 1593 IDLSKENEDLSVKTXXXXXXXXXXXXQPMSLKEMVRTWDICARAAISDYAQQHGGGSFSS 1772
+++SKE EDLSVK QPMSL E+ RTWD+CARA IS+YAQQ GGGSFSS
Sbjct: 1600 VEISKEYEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARAVISEYAQQSGGGSFSS 1659
Query: 1773 R 1775
R
Sbjct: 1660 R 1660
Score = 21.6 bits (44), Expect(2) = 9e-12
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 1841 GTWEKCVSAA 1870
G WE C+SAA
Sbjct: 1662 GAWENCLSAA 1671
>ref|XP_002298206.1| predicted protein [Populus trichocarpa] gi|222845464|gb|EEE83011.1|
predicted protein [Populus trichocarpa]
Length = 772
Score = 405 bits (1042), Expect = e-110
Identities = 225/370 (60%), Positives = 257/370 (69%), Gaps = 12/370 (3%)
Frame = +1
Query: 373 DMKMRQVMGFKQGMAPQHHSAGQRTPYHHPQLKPGAQFPXXXXXXXXXXXXXXXXXXXXX 552
+MK+RQ +G K + QH S GQRT + H Q+KPG+ FP
Sbjct: 319 EMKLRQGIGIKPAVFQQHLSTGQRTAFPHQQMKPGSSFPISSPQMLQHASPQLQQHSSPQ 378
Query: 553 XXXXXXXXXXQNLLTTFPKSGTPLQSANSPFIVPSPSTPLAPSPIPGDTEKQASGISSLS 732
QNLL + K+GTPLQSANSPF+VPSPSTPLAPSP+PGD+EK SGISS
Sbjct: 379 IDQ-------QNLLPSLTKTGTPLQSANSPFVVPSPSTPLAPSPVPGDSEKPISGISS-- 429
Query: 733 NTGHVGXXXXXXXXXXXXXXXIGTPGISASPLLAEFTTTDANQG------------TEQP 876
N H IGTPGISASPLLAEFT+ D G EQP
Sbjct: 430 NIVH----QPTVAQATAPSLAIGTPGISASPLLAEFTSPDGAHGGALTTVSGKSNVMEQP 485
Query: 877 LERLLKAVKAISPKAFSASVSDIGSVISMIDRIAGSAPGNGSRAAVGEDLVAMTKCRMQA 1056
LER++KAVK++SPKA SASVSDIGSV+SMIDRIAGSAPGNGSRAAVGEDLVAMTKCR+QA
Sbjct: 486 LERMIKAVKSLSPKALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQA 545
Query: 1057 RNFISQDGVSATKKMRRDTSAMPLNAVSSAGSVNDSLKQSNVLEMSELESTATSRIKRPR 1236
RNF +QDG++ +KKMRR TSAMPLN SSAGSV+DS KQ E S+LEST TS +KRP+
Sbjct: 546 RNFFTQDGMTGSKKMRRHTSAMPLNVASSAGSVSDSFKQFTGPETSDLESTVTSSVKRPK 605
Query: 1237 VEANHALLEEIKEINQRLIDTVVDISDEDVDPTVXXXXXEGGQGIIVKCSFNAVSLSPNL 1416
+EANHALLEEI+EINQRL+DTVVDISDEDVD T EGG G VKCSF AV+LSPNL
Sbjct: 606 IEANHALLEEIREINQRLLDTVVDISDEDVDSTAAAAAAEGGGGTFVKCSFIAVALSPNL 665
Query: 1417 KTQYASAQMT 1446
K QY SAQM+
Sbjct: 666 KAQYTSAQMS 675
Score = 67.4 bits (163), Expect(2) = 2e-09
Identities = 31/60 (51%), Positives = 41/60 (68%)
Frame = +3
Query: 1596 DLSKENEDLSVKTXXXXXXXXXXXXQPMSLKEMVRTWDICARAAISDYAQQHGGGSFSSR 1775
++SKE EDLS+K QPMSL ++ RTWD+CA A IS++AQQ GGG+FSS+
Sbjct: 702 EVSKEYEDLSIKAKFRFSISLRSLSQPMSLGDIARTWDVCAHAVISEHAQQSGGGTFSSK 761
Score = 23.1 bits (48), Expect(2) = 2e-09
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2
Query: 1841 GTWEKCVSAA 1870
G+WE CVSAA
Sbjct: 763 GSWENCVSAA 772