BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00000426
         (888 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD29693.1| putative glycine rich protein [Rumex obtusifolius]     92   1e-16
gb|AAC50020.1| RNA-binding protein [Nicotiana glutinosa]               90   6e-16
gb|ABB87126.1| putative glycine-rich RNA binding protein-like [S...    90   6e-16
ref|XP_003539016.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...    90   6e-16
gb|ACD03270.1| glycine-rich RNA-binding protein [Nicotiana tabacum]    90   6e-16

>emb|CAD29693.1| putative glycine rich protein [Rumex obtusifolius]
          Length = 168

 Score = 92.4 bits (228), Expect = 1e-16
 Identities = 44/47 (93%), Positives = 47/47 (100%)
 Frame = +3

Query: 573 IISDRETGRSRGFGFVTFTSEQAMKDAIEGMNGQDLDGRNITVNEAQ 713
           II+DRETGRSRGFGFVTF+SEQAM+DAIEGMNGQDLDGRNITVNEAQ
Sbjct: 38  IINDRETGRSRGFGFVTFSSEQAMRDAIEGMNGQDLDGRNITVNEAQ 84



 Score = 72.8 bits (177), Expect = 1e-10
 Identities = 31/36 (86%), Positives = 36/36 (100%)
 Frame = +2

Query: 209 ADVEYRCFVGGLAWATDDQSLEKAFSNYGEILESKV 316
           A+VEYRCFVGGLAWATDDQSLE+AFSNYG++LESK+
Sbjct: 3   AEVEYRCFVGGLAWATDDQSLERAFSNYGQVLESKI 38


>gb|AAC50020.1| RNA-binding protein [Nicotiana glutinosa]
          Length = 156

 Score = 90.1 bits (222), Expect = 6e-16
 Identities = 43/47 (91%), Positives = 45/47 (95%)
 Frame = +3

Query: 573 IISDRETGRSRGFGFVTFTSEQAMKDAIEGMNGQDLDGRNITVNEAQ 713
           II+DRETGRSRGFGFVTF  EQAM+DAIEGMNGQDLDGRNITVNEAQ
Sbjct: 37  IINDRETGRSRGFGFVTFKDEQAMRDAIEGMNGQDLDGRNITVNEAQ 83



 Score = 65.1 bits (157), Expect = 2e-08
 Identities = 29/37 (78%), Positives = 33/37 (89%)
 Frame = +2

Query: 206 MADVEYRCFVGGLAWATDDQSLEKAFSNYGEILESKV 316
           MA+VEYRCFVGGLAWAT DQ+L  AFS YGEIL+SK+
Sbjct: 1   MAEVEYRCFVGGLAWATTDQTLGDAFSQYGEILDSKI 37


>gb|ABB87126.1| putative glycine-rich RNA binding protein-like [Solanum tuberosum]
          Length = 178

 Score = 90.1 bits (222), Expect = 6e-16
 Identities = 43/47 (91%), Positives = 45/47 (95%)
 Frame = +3

Query: 573 IISDRETGRSRGFGFVTFTSEQAMKDAIEGMNGQDLDGRNITVNEAQ 713
           II+DRETGRSRGFGFVTF  EQAM+DAIEGMNGQDLDGRNITVNEAQ
Sbjct: 37  IINDRETGRSRGFGFVTFKDEQAMRDAIEGMNGQDLDGRNITVNEAQ 83



 Score = 64.3 bits (155), Expect = 4e-08
 Identities = 27/37 (72%), Positives = 32/37 (86%)
 Frame = +2

Query: 206 MADVEYRCFVGGLAWATDDQSLEKAFSNYGEILESKV 316
           M DVEYRCFVGGLAWAT D +L +AFS YGE++ESK+
Sbjct: 1   MGDVEYRCFVGGLAWATTDNTLSEAFSQYGEVVESKI 37


>ref|XP_003539016.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
           max]
          Length = 207

 Score = 90.1 bits (222), Expect = 6e-16
 Identities = 43/47 (91%), Positives = 46/47 (97%)
 Frame = +3

Query: 573 IISDRETGRSRGFGFVTFTSEQAMKDAIEGMNGQDLDGRNITVNEAQ 713
           II+DRETGRSRGFGFVTF SEQ+MKDAIEGMNGQ+LDGRNITVNEAQ
Sbjct: 75  IINDRETGRSRGFGFVTFASEQSMKDAIEGMNGQNLDGRNITVNEAQ 121



 Score = 68.9 bits (167), Expect = 1e-09
 Identities = 29/36 (80%), Positives = 35/36 (97%)
 Frame = +2

Query: 209 ADVEYRCFVGGLAWATDDQSLEKAFSNYGEILESKV 316
           +DVEYRCFVGGLAWATDDQ+LE+AFS YGEI+E+K+
Sbjct: 40  SDVEYRCFVGGLAWATDDQALERAFSQYGEIVETKI 75


>gb|ACD03270.1| glycine-rich RNA-binding protein [Nicotiana tabacum]
          Length = 157

 Score = 90.1 bits (222), Expect = 6e-16
 Identities = 43/47 (91%), Positives = 45/47 (95%)
 Frame = +3

Query: 573 IISDRETGRSRGFGFVTFTSEQAMKDAIEGMNGQDLDGRNITVNEAQ 713
           II+DRETGRSRGFGFVTF  EQAM+DAIEGMNGQDLDGRNITVNEAQ
Sbjct: 37  IINDRETGRSRGFGFVTFKDEQAMRDAIEGMNGQDLDGRNITVNEAQ 83



 Score = 63.9 bits (154), Expect = 5e-08
 Identities = 28/37 (75%), Positives = 33/37 (89%)
 Frame = +2

Query: 206 MADVEYRCFVGGLAWATDDQSLEKAFSNYGEILESKV 316
           MA+VEYRCFVGGLAWAT DQ+L  AFS YGEI++SK+
Sbjct: 1   MAEVEYRCFVGGLAWATTDQTLGDAFSQYGEIVDSKI 37