BLASTX nr result
ID: Coptis25_contig00000373
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00000373
(1432 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002282499.1| PREDICTED: actin-related protein 2/3 complex... 467 e-175
ref|XP_002321070.1| predicted protein [Populus trichocarpa] gi|2... 469 e-175
ref|XP_004140136.1| PREDICTED: actin-related protein 2/3 complex... 452 e-170
gb|AFP72374.1| actin-related protein component 1 [Lotus japonicus] 448 e-169
gb|AFK44757.1| unknown [Lotus japonicus] 447 e-168
>ref|XP_002282499.1| PREDICTED: actin-related protein 2/3 complex subunit 1 [Vitis
vinifera] gi|302143485|emb|CBI22046.3| unnamed protein
product [Vitis vinifera]
Length = 378
Score = 467 bits (1202), Expect(2) = e-175
Identities = 219/254 (86%), Positives = 235/254 (92%)
Frame = -1
Query: 1372 MSAIEVHQFAQCITCHAWSPDQTMVAFCPNNTEVHIYNKSSQGKWERVHILQKHDQIVSG 1193
M+AI VHQFA+CITCHAWSPD +MVA CPN+ EVHIY KS Q KWERVH+LQKHDQIVSG
Sbjct: 1 MAAISVHQFAKCITCHAWSPDHSMVALCPNSDEVHIYRKS-QDKWERVHVLQKHDQIVSG 59
Query: 1192 IDWSARSNKIVTVSHDRNSYVWNQEASEWVPTLVILRLNRAALCVKWSPKENKFAVGSGA 1013
IDWSARSN+IVTVSHDRNSYVWNQEA+EWVPTLVILRLNRAALCV+WSP+ENKFAVGSGA
Sbjct: 60 IDWSARSNRIVTVSHDRNSYVWNQEAAEWVPTLVILRLNRAALCVQWSPRENKFAVGSGA 119
Query: 1012 KTVCICYYEQDNNWWVSKLIRKKHSSSVTSVAWHPNNILLATTSTDGKCRIFSTFIKGVD 833
KTVCICYYEQ+NNWWVSKLIRK+H+SSVT VAWHPNNILLATTSTDGKCR+FSTFIKGVD
Sbjct: 120 KTVCICYYEQENNWWVSKLIRKRHNSSVTGVAWHPNNILLATTSTDGKCRVFSTFIKGVD 179
Query: 832 SREXXXXXXLDMKFGEQIVQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPS 653
+R+ D KFGEQIVQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP
Sbjct: 180 TRDSRTGSSSDAKFGEQIVQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL 239
Query: 652 AQSVAFNGLPLRDV 611
AQ+VAF LPLRDV
Sbjct: 240 AQNVAFRDLPLRDV 253
Score = 176 bits (445), Expect(2) = e-175
Identities = 82/124 (66%), Positives = 100/124 (80%), Gaps = 1/124 (0%)
Frame = -2
Query: 609 VLFVSERMLVGVGFDCKPMVFAADERGIWNFVRLLDQRKLAPSGTKYGSQISEAFGKFYG 430
VLFVSERM++GVGFDC PMVFAAD GIW+F+R L +RK + S +YGSQ SEAFGK YG
Sbjct: 253 VLFVSERMVIGVGFDCSPMVFAADGSGIWSFIRFLGERKTSSSSARYGSQFSEAFGKLYG 312
Query: 429 QSKSTVSNDAVEPSRSHGGVHENCINSIVPL-KIVDGTVKRFSSSGLDGKVVVWDLENQP 253
QSK V NDA+EPSR+ GG+HENCIN+I PL + D V RFS+SGLDGK+V+WDL+NQ
Sbjct: 313 QSKQGVGNDAIEPSRTRGGIHENCINAIAPLTEDGDSKVTRFSTSGLDGKIVIWDLKNQE 372
Query: 252 EFSL 241
+ S+
Sbjct: 373 DLSV 376
>ref|XP_002321070.1| predicted protein [Populus trichocarpa] gi|222861843|gb|EEE99385.1|
predicted protein [Populus trichocarpa]
Length = 378
Score = 469 bits (1206), Expect(2) = e-175
Identities = 219/254 (86%), Positives = 234/254 (92%)
Frame = -1
Query: 1372 MSAIEVHQFAQCITCHAWSPDQTMVAFCPNNTEVHIYNKSSQGKWERVHILQKHDQIVSG 1193
M+A+EVHQFAQCITCHAWS D++M+AFCPNN EVHIY + SQ KWE+VH+LQKHDQIV G
Sbjct: 1 MAAVEVHQFAQCITCHAWSADRSMIAFCPNNNEVHIY-RLSQDKWEKVHVLQKHDQIVCG 59
Query: 1192 IDWSARSNKIVTVSHDRNSYVWNQEASEWVPTLVILRLNRAALCVKWSPKENKFAVGSGA 1013
IDWSARSN+IVT SHDRNSYVWNQE SEWVPTLVILRLNRAALCV+WSPKENKFAVGSGA
Sbjct: 60 IDWSARSNRIVTASHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 119
Query: 1012 KTVCICYYEQDNNWWVSKLIRKKHSSSVTSVAWHPNNILLATTSTDGKCRIFSTFIKGVD 833
KTVCICYYEQDNNWWVSKLIRK+H SSVTSVAWHPNNILLATTSTDGKCR+FSTFIKGVD
Sbjct: 120 KTVCICYYEQDNNWWVSKLIRKRHDSSVTSVAWHPNNILLATTSTDGKCRVFSTFIKGVD 179
Query: 832 SREXXXXXXLDMKFGEQIVQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPS 653
+R+ D KFGEQIVQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP
Sbjct: 180 TRDSKAGSVSDSKFGEQIVQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL 239
Query: 652 AQSVAFNGLPLRDV 611
AQ+VAF LPLRDV
Sbjct: 240 AQNVAFRDLPLRDV 253
Score = 173 bits (439), Expect(2) = e-175
Identities = 84/123 (68%), Positives = 99/123 (80%), Gaps = 1/123 (0%)
Frame = -2
Query: 609 VLFVSERMLVGVGFDCKPMVFAADERGIWNFVRLLDQRKLAPSGTKYGSQISEAFGKFYG 430
VLFVSE+M++GVGFDC PMVFAADERGIW+F+R L +RK SG++Y SQ SEAFGKFYG
Sbjct: 253 VLFVSEKMVIGVGFDCNPMVFAADERGIWSFIRFLGERKSTLSGSRYSSQFSEAFGKFYG 312
Query: 429 QSKSTVSNDAVEPSRSHGGVHENCINSIVPLKIVDGTVK-RFSSSGLDGKVVVWDLENQP 253
QSK SND +EPSRS GG+HENCI+ I+ L + K RFS+SGLDGKVVVWDLENQ
Sbjct: 313 QSKYGASNDGIEPSRSRGGIHENCISCIMSLTESGSSRKTRFSTSGLDGKVVVWDLENQE 372
Query: 252 EFS 244
+ S
Sbjct: 373 DLS 375
>ref|XP_004140136.1| PREDICTED: actin-related protein 2/3 complex subunit 1-like [Cucumis
sativus] gi|449481091|ref|XP_004156079.1| PREDICTED:
actin-related protein 2/3 complex subunit 1-like [Cucumis
sativus]
Length = 379
Score = 452 bits (1164), Expect(2) = e-170
Identities = 211/254 (83%), Positives = 227/254 (89%)
Frame = -1
Query: 1372 MSAIEVHQFAQCITCHAWSPDQTMVAFCPNNTEVHIYNKSSQGKWERVHILQKHDQIVSG 1193
M+AI VHQFA CITCHAWSPD +MVAFCPNN EVHIY KS Q WERVH+LQKHDQ++SG
Sbjct: 1 MTAIAVHQFAHCITCHAWSPDHSMVAFCPNNNEVHIY-KSLQDNWERVHVLQKHDQLISG 59
Query: 1192 IDWSARSNKIVTVSHDRNSYVWNQEASEWVPTLVILRLNRAALCVKWSPKENKFAVGSGA 1013
IDWS RSN+IVT SHDRNSYVWN E SEWVPTLVILRLNRAALCV+WSPKENKFAVGSGA
Sbjct: 60 IDWSVRSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 119
Query: 1012 KTVCICYYEQDNNWWVSKLIRKKHSSSVTSVAWHPNNILLATTSTDGKCRIFSTFIKGVD 833
KTVCICYYEQ+NNWWVSKLIRK+H SSVT+VAWHPNN+LLATTSTDGKCRIFSTFIKGVD
Sbjct: 120 KTVCICYYEQENNWWVSKLIRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVD 179
Query: 832 SREXXXXXXLDMKFGEQIVQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPS 653
+++ D KFGE IVQLDLSFSWAFGVKWS SGNTLAY GHNSMIYFVD+VGPSP
Sbjct: 180 TKDSKAGTFSDSKFGELIVQLDLSFSWAFGVKWSASGNTLAYAGHNSMIYFVDEVGPSPL 239
Query: 652 AQSVAFNGLPLRDV 611
AQSVAF LPLRD+
Sbjct: 240 AQSVAFRDLPLRDI 253
Score = 172 bits (436), Expect(2) = e-170
Identities = 86/125 (68%), Positives = 99/125 (79%), Gaps = 3/125 (2%)
Frame = -2
Query: 609 VLFVSERMLVGVGFDCKPMVFAADERGIWNFVRLLDQRKLAPSGTKYGSQISEAFGKFYG 430
+LFVSERM++GVGFDC PM FAADERGIW+FVR L ++K A SG+KYGSQ SEAFGK YG
Sbjct: 253 ILFVSERMVIGVGFDCHPMAFAADERGIWSFVRFLGEKKTA-SGSKYGSQFSEAFGKLYG 311
Query: 429 QSKSTVSNDAVEPSRSHGGVHENCINSIVPLKIVDG---TVKRFSSSGLDGKVVVWDLEN 259
Q + V ND+VE SR G VHENCIN IVPLK G T+KRFS+SGLDGKVV+WDLE
Sbjct: 312 QPRQGVGNDSVESSRLRGCVHENCINCIVPLKEPGGRGSTIKRFSTSGLDGKVVIWDLEG 371
Query: 258 QPEFS 244
Q + S
Sbjct: 372 QDDLS 376
>gb|AFP72374.1| actin-related protein component 1 [Lotus japonicus]
Length = 376
Score = 448 bits (1152), Expect(2) = e-169
Identities = 208/254 (81%), Positives = 226/254 (88%)
Frame = -1
Query: 1372 MSAIEVHQFAQCITCHAWSPDQTMVAFCPNNTEVHIYNKSSQGKWERVHILQKHDQIVSG 1193
M+ + VHQFAQCITCHAWSPDQ+MVA CPNN EVHIY + + KWE+VH+LQKHDQ+VSG
Sbjct: 1 MAVMAVHQFAQCITCHAWSPDQSMVALCPNNNEVHIY-RLVEDKWEKVHVLQKHDQVVSG 59
Query: 1192 IDWSARSNKIVTVSHDRNSYVWNQEASEWVPTLVILRLNRAALCVKWSPKENKFAVGSGA 1013
IDWS RSN+IVT SHDRNSYVWN E SEWVPTLVILRLNRAALCV+WSPKENKFAVGSGA
Sbjct: 60 IDWSTRSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 119
Query: 1012 KTVCICYYEQDNNWWVSKLIRKKHSSSVTSVAWHPNNILLATTSTDGKCRIFSTFIKGVD 833
KTVCICYYEQ+NNWWVSKLIRK+H SSVTSV+WHPNNILLATTSTDGKCR+FSTFIKGVD
Sbjct: 120 KTVCICYYEQENNWWVSKLIRKRHDSSVTSVSWHPNNILLATTSTDGKCRVFSTFIKGVD 179
Query: 832 SREXXXXXXLDMKFGEQIVQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPS 653
+++ D KFGE IVQLDLS SW FGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP
Sbjct: 180 AKDSIKGTLSDSKFGELIVQLDLSSSWTFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL 239
Query: 652 AQSVAFNGLPLRDV 611
AQ+V F LPLRDV
Sbjct: 240 AQNVVFRDLPLRDV 253
Score = 174 bits (441), Expect(2) = e-169
Identities = 81/120 (67%), Positives = 98/120 (81%)
Frame = -2
Query: 609 VLFVSERMLVGVGFDCKPMVFAADERGIWNFVRLLDQRKLAPSGTKYGSQISEAFGKFYG 430
VLFVSER ++GVGFDC PMVFAADERGIW+F+R L +RK A S ++YGSQ SEAFGKFYG
Sbjct: 253 VLFVSERTVIGVGFDCNPMVFAADERGIWSFIRYLGERKTASSPSRYGSQFSEAFGKFYG 312
Query: 429 QSKSTVSNDAVEPSRSHGGVHENCINSIVPLKIVDGTVKRFSSSGLDGKVVVWDLENQPE 250
QSK VSND V+ SR+ G VHENCINSI+PL +RFS+SGLDG++V+WDLEN+ +
Sbjct: 313 QSKHGVSNDTVDTSRTRGAVHENCINSIIPLGEHGALTRRFSTSGLDGRIVLWDLENEQD 372
>gb|AFK44757.1| unknown [Lotus japonicus]
Length = 376
Score = 447 bits (1149), Expect(2) = e-168
Identities = 208/254 (81%), Positives = 226/254 (88%)
Frame = -1
Query: 1372 MSAIEVHQFAQCITCHAWSPDQTMVAFCPNNTEVHIYNKSSQGKWERVHILQKHDQIVSG 1193
M+ + VHQFAQCITCHAWSPDQ+MVA CPNN EVHIY + + KWE+VH+LQKHDQ+VSG
Sbjct: 1 MAVMAVHQFAQCITCHAWSPDQSMVALCPNNNEVHIY-RLVEDKWEKVHVLQKHDQVVSG 59
Query: 1192 IDWSARSNKIVTVSHDRNSYVWNQEASEWVPTLVILRLNRAALCVKWSPKENKFAVGSGA 1013
IDWS RSN+IVT SHDRNSYVWN E SEWVPTLVILRLNRAALCV+WSPKENKFAVGSGA
Sbjct: 60 IDWSTRSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 119
Query: 1012 KTVCICYYEQDNNWWVSKLIRKKHSSSVTSVAWHPNNILLATTSTDGKCRIFSTFIKGVD 833
KTVCICYYEQ+NNWWVSKLIRK+H SSVTSV+WHPNNILLATTSTDGKCR+FSTFIKGVD
Sbjct: 120 KTVCICYYEQENNWWVSKLIRKRHDSSVTSVSWHPNNILLATTSTDGKCRVFSTFIKGVD 179
Query: 832 SREXXXXXXLDMKFGEQIVQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPS 653
+++ D KFGE IVQLDLS SW FGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP
Sbjct: 180 AKDSVKGTLSDSKFGELIVQLDLSSSWTFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL 239
Query: 652 AQSVAFNGLPLRDV 611
AQ+V F LPLRDV
Sbjct: 240 AQNVVFCDLPLRDV 253
Score = 174 bits (440), Expect(2) = e-168
Identities = 81/118 (68%), Positives = 97/118 (82%)
Frame = -2
Query: 609 VLFVSERMLVGVGFDCKPMVFAADERGIWNFVRLLDQRKLAPSGTKYGSQISEAFGKFYG 430
VLFVSER ++GVGFDC PMVFAADERGIW+F+R L +RK A S ++YGSQ SEAFGKFYG
Sbjct: 253 VLFVSERTVIGVGFDCNPMVFAADERGIWSFIRYLGERKTASSPSRYGSQFSEAFGKFYG 312
Query: 429 QSKSTVSNDAVEPSRSHGGVHENCINSIVPLKIVDGTVKRFSSSGLDGKVVVWDLENQ 256
QSK VSND V+ SR+ G VHENCINSI+PL +RFS+SGLDG++V+WDLEN+
Sbjct: 313 QSKHGVSNDTVDTSRTRGAVHENCINSIIPLGEHGALTRRFSTSGLDGRIVLWDLENE 370