BLASTX nr result

ID: Coptis25_contig00000305 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00000305
         (1217 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632757.1| PREDICTED: auxin-repressed 12.5 kDa protein-...    93   1e-16
ref|XP_003528661.1| PREDICTED: uncharacterized protein LOC100820...    74   7e-11
ref|XP_003578165.1| PREDICTED: uncharacterized protein LOC100826...    65   3e-08
gb|ACG37064.1| auxin-repressed protein [Zea mays] gi|414870259|t...    64   1e-07
ref|NP_001150341.1| LOC100283971 [Zea mays] gi|195638550|gb|ACG3...    63   1e-07

>ref|XP_003632757.1| PREDICTED: auxin-repressed 12.5 kDa protein-like [Vitis vinifera]
           gi|297742955|emb|CBI35822.3| unnamed protein product
           [Vitis vinifera]
          Length = 126

 Score = 93.2 bits (230), Expect = 1e-16
 Identities = 54/130 (41%), Positives = 69/130 (53%)
 Frame = +3

Query: 12  MGLLDNFWDDTIAGPKPEMGHGKKLRKFDSLPAAKGIMVPISEDVPISRSITIVKPVINT 191
           MG LD  WD+T+AGP PE G GK LRK+ SL AA+   +   ++V ++RSITI+K     
Sbjct: 1   MGFLDKLWDETVAGPPPETGLGK-LRKYKSLSAARSPPIINPDEVQVTRSITILK---TN 56

Query: 192 NNLRNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKRLSRRKTMSEAFERAEPRSPTVY 371
           ++ RNF                              K  +RRK   EAFERAEPRSPTVY
Sbjct: 57  SSFRNFSPDSVSVPNSPAGSSAPESPFTPGTPTGDYKTDARRKAALEAFERAEPRSPTVY 116

Query: 372 DWLVLCTFSR 401
           DW+V+    R
Sbjct: 117 DWIVISALDR 126


>ref|XP_003528661.1| PREDICTED: uncharacterized protein LOC100820058 isoform 2 [Glycine
           max]
          Length = 122

 Score = 73.9 bits (180), Expect = 7e-11
 Identities = 46/130 (35%), Positives = 60/130 (46%)
 Frame = +3

Query: 12  MGLLDNFWDDTIAGPKPEMGHGKKLRKFDSLPAAKGIMVPISEDVPISRSITIVKPVINT 191
           MG L   WD+T+AGP PE G G KLRK++S      +   ++E VPISRSITIV+     
Sbjct: 3   MGFLHKLWDETLAGPAPETGLG-KLRKYNSFSGGSSVRSTVAEHVPISRSITIVRSQSGF 61

Query: 192 NNLRNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKRLSRRKTMSEAFERAEPRSPTVY 371
                                               K+L+RRK  S   E AE RSPT+Y
Sbjct: 62  GTTTT--------TSAPSAPTTPRTPLTPEAPGGDFKKLTRRK--SSTVESAENRSPTIY 111

Query: 372 DWLVLCTFSR 401
           DW+++    R
Sbjct: 112 DWVIMSALDR 121


>ref|XP_003578165.1| PREDICTED: uncharacterized protein LOC100826495 [Brachypodium
           distachyon]
          Length = 134

 Score = 65.5 bits (158), Expect = 3e-08
 Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
 Frame = +3

Query: 12  MGLLDNFWDDTIAGPKPEMGHGKKLRKFDSL-PAAKGIMVPISEDVPISRSITIVK-PVI 185
           MGLLD  WDDT+AGP+PE G G KLRK+ S  P++     P ++   ++RSITI++ P +
Sbjct: 1   MGLLDQLWDDTVAGPRPESGLG-KLRKYASFSPSSTAAAAPPADAPAVTRSITILRPPAL 59

Query: 186 NTNNLRNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKRLSRRKTMSEAFERAE---PR 356
           +  +  +                                R   R   ++  + A    PR
Sbjct: 60  SVPSAGSEAGGSAPSSPASVPDSPFGTARTPRGDGWSKLRRKGRMAAADGMDAASPGTPR 119

Query: 357 SPTVYDWLVLCTFSR 401
           SPTVYDW+V+ +  R
Sbjct: 120 SPTVYDWVVISSLDR 134


>gb|ACG37064.1| auxin-repressed protein [Zea mays] gi|414870259|tpg|DAA48816.1|
           TPA: auxin-repressed protein [Zea mays]
          Length = 131

 Score = 63.5 bits (153), Expect = 1e-07
 Identities = 45/136 (33%), Positives = 64/136 (47%), Gaps = 6/136 (4%)
 Frame = +3

Query: 12  MGLLDNFWDDTIAGPKPEMGHGKKLRKFDSL----PAAKGIMVPISEDVP-ISRSITIVK 176
           MGLLD  WD+T+AGP+P+ G G KLRK+ S      ++  I+ P     P ++RSITI +
Sbjct: 1   MGLLDQLWDETVAGPRPDSGLG-KLRKYSSFSPSSSSSSSILAPAPAPAPAVTRSITIAR 59

Query: 177 PVINTNNLRNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKRLSRRKTMSEAFERA-EP 353
           P     +L                                 +R  R+  +S+  E A  P
Sbjct: 60  P----PSLSVESYSSSSVPSSPASTPDSPLAAATPPKADVWRRFRRKTKVSDGPEPAVGP 115

Query: 354 RSPTVYDWLVLCTFSR 401
           RSPTVYDW+V+ +  R
Sbjct: 116 RSPTVYDWVVISSLDR 131


>ref|NP_001150341.1| LOC100283971 [Zea mays] gi|195638550|gb|ACG38743.1| auxin-repressed
           protein [Zea mays]
          Length = 132

 Score = 63.2 bits (152), Expect = 1e-07
 Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
 Frame = +3

Query: 12  MGLLDNFWDDTIAGPKPEMGHGKKLRKFDSL-----PAAKGIMVPISEDVP-ISRSITIV 173
           MGLLD  WD+T+AGP+P+ G G KLRK+ S       ++  I+ P     P ++RSITI 
Sbjct: 1   MGLLDQLWDETVAGPRPDSGLG-KLRKYSSFSPSSSSSSSSILAPAPAPAPAVTRSITIA 59

Query: 174 KPVINTNNLRNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKRLSRRKTMSEAFERA-E 350
           +P     +L                                 +R  R+  +S+  E A  
Sbjct: 60  RP----PSLSVESYSSSSVPSSPASTPDSPLAAATPPKADGWRRFRRKTKVSDGPEPAVG 115

Query: 351 PRSPTVYDWLVLCTFSR 401
           PRSPTVYDW+V+ +  R
Sbjct: 116 PRSPTVYDWVVISSLDR 132


Top